>P66028:RHO_MYCTU Transcription termination factor rho - Mycobacterium tuberculosis|
          Length = 602
 Score = 32.3 bits (72), Expect = 2.3
 Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 4/123 (3%)
 Frame = -1

Query: 583 RSGHRREEDEAPHPSAHSATTGERLGERGDDRDGHRLRPELGTVSR--WRRGVAEALGTV 410
           RS    ++ + P  S   AT GE+      D    ++RPE  + +R     G  E  GT 
Sbjct: 84  RSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQVRPERRSATREAGPSGSGERAGTA 143

Query: 409 AVTRVR*RWWLEGGRGSGSTEFSRDSAARTSAMGRQRAPGARERG--LGERLQ*DRGEAT 236
           A          +GG+    TE     A       +Q + G + RG   GE  Q  RG   
Sbjct: 144 ADDTDN----RQGGQQDAKTEERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRF 199

Query: 235 RRR 227
           R R
Sbjct: 200 RDR 202

>P66029:RHO_MYCBO Transcription termination factor rho - Mycobacterium bovis|
          Length = 602

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 4/123 (3%)
 Frame = -1

Query: 583 RSGHRREEDEAPHPSAHSATTGERLGERGDDRDGHRLRPELGTVSR--WRRGVAEALGTV 410
           RS    ++ + P  S   AT GE+      D    ++RPE  + +R     G  E  GT 
Sbjct: 84  RSAQEHDKGDRPPSSEAPATQGEQTPTEQIDSQSQQVRPERRSATREAGPSGSGERAGTA 143

Query: 409 AVTRVR*RWWLEGGRGSGSTEFSRDSAARTSAMGRQRAPGARERG--LGERLQ*DRGEAT 236
           A          +GG+    TE     A       +Q + G + RG   GE  Q  RG   
Sbjct: 144 ADDTDN----RQGGQQDAKTEERGTDAGGDQGGDQQASGGQQARGDEDGEARQGRRGRRF 199

Query: 235 RRR 227
           R R
Sbjct: 200 RDR 202

>Q05086:UBE3A_HUMAN Ubiquitin-protein ligase E3A - Homo sapiens (Human)|
          Length = 875

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 580 SGHRREEDEAPHPSAHSATTGERLGERGDDRDGHRLRP---ELG 458
           + H  E+DE P P +   T  E LGE   ++ G R+ P   ELG
Sbjct: 390 TNHNEEDDEEPIPESSELTLQELLGEERRNKKGPRVDPLETELG 433

>Q7ZY47:DDX42_XENLA ATP-dependent RNA helicase DDX42 - Xenopus laevis (African clawed|
           frog)
          Length = 947

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = -1

Query: 376 EGGRGSGSTEFSRDSAARTSAMGRQRAPGARERGLGERLQ*DRGEATRRRS 224
           E   G G  E SRD    +S  G  R  G+R+ G G R     GE  R  S
Sbjct: 845 ERNGGEGRRESSRDGRRDSSRDGESRRDGSRDGGEGRRESSRDGEGRRESS 895

>P22420:VE2_HPV47 Regulatory protein E2 - Human papillomavirus type 47|
          Length = 506

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 32/121 (26%), Positives = 42/121 (34%)
 Frame = -1

Query: 589 QRRSGHRREEDEAPHPSAHSATTGERLGERGDDRDGHRLRPELGTVSRWRRGVAEALGTV 410
           QRRS  R     +    + + TT      R    +  R R    + SR          T 
Sbjct: 265 QRRSRSRSRSRSSSQTHSSTTTTTTTYRSRSTSLNKTRARSRSRSTSR---------STS 315

Query: 409 AVTRVR*RWWLEGGRGSGSTEFSRDSAARTSAMGRQRAPGARERGLGERLQ*DRGEATRR 230
             +R        GGRGS + + SR  +  TS   R+     R RG   R     G   RR
Sbjct: 316 TTSR-------RGGRGSSTRQRSRSPSTYTSKRSREGNTRGRGRGRQGRAGSSGGREQRR 368

Query: 229 R 227
           R
Sbjct: 369 R 369

>O08759:UBE3A_MOUSE Ubiquitin-protein ligase E3A - Mus musculus (Mouse)|
          Length = 885

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = -1

Query: 580 SGHRREEDEAPHPSAHSATTGERLGERGDDRDGHRLRP---ELG 458
           + H  E+DE P P +   T  E LG+   ++ G R+ P   ELG
Sbjct: 401 TNHNEEDDEEPIPESSELTLQELLGDERRNKKGPRVDPLETELG 444


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 102,154,867
Number of extensions: 1807553
Number of successful extensions: 5428
Number of sequences better than 10.0: 6
Number of HSP's gapped: 5422
Number of HSP's successfully gapped: 6
Length of query: 270
Length of database: 100,686,439
Length adjustment: 111
Effective length of query: 159
Effective length of database: 70,239,694
Effective search space: 11168111346
Effective search space used: 11168111346
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)