ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf166o14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome 42 3.1
2ref|XM_001154488.1| PREDICTED: Pan troglodytes hypothetical prot... 42 3.1
3gb|AC087650.12| Homo sapiens, clone RP11-100E5, complete sequence 42 3.1
4gb|AF212918.1|AF212918 Moria kikuchii 18S ribosomal RNA gene, pa... 42 3.1
5gb|AC155241.2| Mus musculus BAC clone RP24-485P18 from chromosom... 42 3.1
6gb|BC035366.1| Homo sapiens, clone IMAGE:5176619, mRNA 42 3.1
7emb|CR613334.1| full-length cDNA clone CS0DL005YO03 of B cells (... 42 3.1
8gb|AC105046.10| Homo sapiens chromosome 8, clone CTD-3247F14, co... 42 3.1
9gb|DQ006006.1| Suregada boiviniana voucher Rakotomalaza et al. 1... 42 3.1
10gb|AC055854.14| Homo sapiens chromosome 8, clone RP11-459E5, com... 42 3.1

>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome
          Length = 5505494
 Score = 42.1 bits (21), Expect = 3.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 596   gctggagccggccgaacgagcgccggcgc 624
             |||||||||||||||||| || |||||||
Sbjct: 72633 gctggagccggccgaacgcgccccggcgc 72605



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>ref|XM_001154488.1| PREDICTED: Pan troglodytes hypothetical protein LOC740665, transcript
            variant 3 (LOC740665), mRNA
          Length = 1933

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 377  taaccaccacctctaccttaccctc 401
            ||||||||||||||||||| |||||
Sbjct: 1691 taaccaccacctctaccttcccctc 1715



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>gb|AC087650.12| Homo sapiens, clone RP11-100E5, complete sequence
          Length = 169598

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 377   taaccaccacctctaccttaccctc 401
             ||||||||||||||||||| |||||
Sbjct: 41805 taaccaccacctctaccttcccctc 41781



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>gb|AF212918.1|AF212918 Moria kikuchii 18S ribosomal RNA gene, partial sequence
          Length = 504

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 219 agctccgaccgtcgtcgcgta 239
           |||||||||||||||||||||
Sbjct: 131 agctccgaccgtcgtcgcgta 151



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>gb|AC155241.2| Mus musculus BAC clone RP24-485P18 from chromosome 12, complete
             sequence
          Length = 144320

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 122   agccctctggaactctccccc 142
             |||||||||||||||||||||
Sbjct: 66866 agccctctggaactctccccc 66846



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>gb|BC035366.1| Homo sapiens, clone IMAGE:5176619, mRNA
          Length = 2335

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 377  taaccaccacctctaccttaccctc 401
            ||||||||||||||||||| |||||
Sbjct: 997  taaccaccacctctaccttcccctc 1021



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>emb|CR613334.1| full-length cDNA clone CS0DL005YO03 of B cells (Ramos cell line) Cot
            25-normalized of Homo sapiens (human)
          Length = 1896

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 377  taaccaccacctctaccttaccctc 401
            ||||||||||||||||||| |||||
Sbjct: 1654 taaccaccacctctaccttcccctc 1678



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>gb|AC105046.10| Homo sapiens chromosome 8, clone CTD-3247F14, complete sequence
          Length = 87734

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 295 gagctctctgccttcccatgg 315
           |||||||||||||||||||||
Sbjct: 941 gagctctctgccttcccatgg 921



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>gb|DQ006006.1| Suregada boiviniana voucher Rakotomalaza et al. 1292 MO 18S
           ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, 5.8S ribosomal RNA gene, and
           internal transcribed spacer 2, complete sequence; and
           28S ribosomal RNA gene, partial sequence
          Length = 716

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 423 gcctcggccactcccctccgc 443
           |||||||||||||||||||||
Sbjct: 165 gcctcggccactcccctccgc 185



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>gb|AC055854.14| Homo sapiens chromosome 8, clone RP11-459E5, complete sequence
          Length = 138388

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 295   gagctctctgccttcccatgg 315
             |||||||||||||||||||||
Sbjct: 32097 gagctctctgccttcccatgg 32117


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 94,921,964
Number of extensions: 5120935
Number of successful extensions: 109061
Number of sequences better than 10.0: 10
Number of HSP's gapped: 109061
Number of HSP's successfully gapped: 10
Length of query: 811
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 789
Effective length of database: 18,508,616,841
Effective search space: 14603298687549
Effective search space used: 14603298687549
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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