ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf164h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q92Q24:TATB_RHIME Sec-independent protein translocase protein ta... 36 0.60
2Q59I72:CTNA1_RABIT Catenin alpha-1 - Oryctolagus cuniculus (Rabbit) 34 2.3
3P26231:CTNA1_MOUSE Catenin alpha-1 - Mus musculus (Mouse) 34 2.3
4P35221:CTNA1_HUMAN Catenin alpha-1 - Homo sapiens (Human) 34 2.3
5Q3MHM6:CTNA1_BOVIN Catenin alpha-1 - Bos taurus (Bovine) 34 2.3
6Q65CL1:CTNA3_MOUSE Catenin alpha-3 - Mus musculus (Mouse) 33 3.9
7O53657:MMPL3_MYCTU Putative membrane protein mmpL3 - Mycobacteri... 32 8.6
8Q9UI47:CTNA3_HUMAN Catenin alpha-3 - Homo sapiens (Human) 32 8.6

>Q92Q24:TATB_RHIME Sec-independent protein translocase protein tatB homolog -|
           Rhizobium meliloti (Sinorhizobium meliloti)
          Length = 215
 Score = 35.8 bits (81), Expect = 0.60
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 307 MLGVSTGQLLVILGACSVMMKPSDMIKMARVAGRMTGRAVGRLMIYRRQMDDIFEQ 474
           ML +   +L+VI     +++ P D+  M R  GRMT +  G    +RRQ D+   +
Sbjct: 1   MLDIGWTELVVIAIVLIIVVGPKDLPPMLRAFGRMTSKMRGMASDFRRQFDEALRE 56



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>Q59I72:CTNA1_RABIT Catenin alpha-1 - Oryctolagus cuniculus (Rabbit)|
          Length = 907

 Score = 33.9 bits (76), Expect = 2.3
 Identities = 26/119 (21%), Positives = 52/119 (43%)
 Frame = +1

Query: 268 ISPAGGSVVPADNMLGVSTGQLLVILGACSVMMKPSDMIKMARVAGRMTGRAVGRLMIYR 447
           ++ A   +   D+ L VS   +L  +  C + ++  D+  + R AG + GRA   + +  
Sbjct: 499 LTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVT 558

Query: 448 RQMDDIFEQTAAKKVPC*FLHILIRSFKMLCQSYNQLVMKFRTYLE*LLASLSKGSTTP 624
            +MD+       +KV        + + K+L    N ++ +F   +E  + +LS     P
Sbjct: 559 SEMDNYEPGVYTEKV--------LEATKLLS---NTVMPRFTEQVEAAVEALSSDPAQP 606



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>P26231:CTNA1_MOUSE Catenin alpha-1 - Mus musculus (Mouse)|
          Length = 906

 Score = 33.9 bits (76), Expect = 2.3
 Identities = 26/119 (21%), Positives = 52/119 (43%)
 Frame = +1

Query: 268 ISPAGGSVVPADNMLGVSTGQLLVILGACSVMMKPSDMIKMARVAGRMTGRAVGRLMIYR 447
           ++ A   +   D+ L VS   +L  +  C + ++  D+  + R AG + GRA   + +  
Sbjct: 498 LTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVT 557

Query: 448 RQMDDIFEQTAAKKVPC*FLHILIRSFKMLCQSYNQLVMKFRTYLE*LLASLSKGSTTP 624
            +MD+       +KV        + + K+L    N ++ +F   +E  + +LS     P
Sbjct: 558 SEMDNYEPGVYTEKV--------LEATKLLS---NTVMPRFTEQVEAAVEALSSDPAQP 605



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>P35221:CTNA1_HUMAN Catenin alpha-1 - Homo sapiens (Human)|
          Length = 906

 Score = 33.9 bits (76), Expect = 2.3
 Identities = 26/119 (21%), Positives = 52/119 (43%)
 Frame = +1

Query: 268 ISPAGGSVVPADNMLGVSTGQLLVILGACSVMMKPSDMIKMARVAGRMTGRAVGRLMIYR 447
           ++ A   +   D+ L VS   +L  +  C + ++  D+  + R AG + GRA   + +  
Sbjct: 498 LTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVT 557

Query: 448 RQMDDIFEQTAAKKVPC*FLHILIRSFKMLCQSYNQLVMKFRTYLE*LLASLSKGSTTP 624
            +MD+       +KV        + + K+L    N ++ +F   +E  + +LS     P
Sbjct: 558 SEMDNYEPGVYTEKV--------LEATKLLS---NTVMPRFTEQVEAAVEALSSDPAQP 605



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>Q3MHM6:CTNA1_BOVIN Catenin alpha-1 - Bos taurus (Bovine)|
          Length = 906

 Score = 33.9 bits (76), Expect = 2.3
 Identities = 26/119 (21%), Positives = 52/119 (43%)
 Frame = +1

Query: 268 ISPAGGSVVPADNMLGVSTGQLLVILGACSVMMKPSDMIKMARVAGRMTGRAVGRLMIYR 447
           ++ A   +   D+ L VS   +L  +  C + ++  D+  + R AG + GRA   + +  
Sbjct: 498 LTDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVT 557

Query: 448 RQMDDIFEQTAAKKVPC*FLHILIRSFKMLCQSYNQLVMKFRTYLE*LLASLSKGSTTP 624
            +MD+       +KV        + + K+L    N ++ +F   +E  + +LS     P
Sbjct: 558 SEMDNYEPGVYTEKV--------LEATKLLS---NTVMPRFTEQVEAAVEALSSDPAQP 605



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>Q65CL1:CTNA3_MOUSE Catenin alpha-3 - Mus musculus (Mouse)|
          Length = 895

 Score = 33.1 bits (74), Expect = 3.9
 Identities = 29/118 (24%), Positives = 52/118 (44%)
 Frame = +1

Query: 268 ISPAGGSVVPADNMLGVSTGQLLVILGACSVMMKPSDMIKMARVAGRMTGRAVGRLMIYR 447
           ++ A   +   D+ L VS   +L  +  C + ++  D   + R AG + GRA     I  
Sbjct: 493 LTEAVDDITSIDDFLAVSESHILEDVNKCIIALRDQDADNLDRAAGAIRGRAARVAHIVA 552

Query: 448 RQMDDIFEQTAAKKVPC*FLHILIRSFKMLCQSYNQLVMKFRTYLE*LLASLSKGSTT 621
            +MD  +E  A       +   ++R+   L  +   ++ +F T +   L +LSK S T
Sbjct: 553 GEMDS-YEPGA-------YTEGVMRNVNFLTST---VIPEFVTQVNVALDALSKNSLT 599



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>O53657:MMPL3_MYCTU Putative membrane protein mmpL3 - Mycobacterium tuberculosis|
          Length = 944

 Score = 32.0 bits (71), Expect = 8.6
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +1

Query: 169 PPLD--QPKAES-RPHRNSPASAHQLCRPRQVVRSPISPAGGS 288
           PP D   P AES RP R+SPAS+ +L    +   +P +P+G S
Sbjct: 784 PPHDPTHPLAESPRPARSSPASSPELTPALEATAAPAAPSGAS 826



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>Q9UI47:CTNA3_HUMAN Catenin alpha-3 - Homo sapiens (Human)|
          Length = 895

 Score = 32.0 bits (71), Expect = 8.6
 Identities = 28/116 (24%), Positives = 51/116 (43%)
 Frame = +1

Query: 268 ISPAGGSVVPADNMLGVSTGQLLVILGACSVMMKPSDMIKMARVAGRMTGRAVGRLMIYR 447
           ++ A   +   D+ L VS   +L  +  C + ++  D   + R AG + GRA     I  
Sbjct: 493 LTEAVDDITSIDDFLAVSESHILEDVNKCIIALRDQDADNLDRAAGAIRGRAARVAHIVT 552

Query: 448 RQMDDIFEQTAAKKVPC*FLHILIRSFKMLCQSYNQLVMKFRTYLE*LLASLSKGS 615
            +MD  +E  A       +   ++R+   L  +   ++ +F T +   L +LSK S
Sbjct: 553 GEMDS-YEPGA-------YTEGVMRNVNFLTST---VIPEFVTQVNVALEALSKSS 597


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 304,331,529
Number of extensions: 6789554
Number of successful extensions: 17043
Number of sequences better than 10.0: 8
Number of HSP's gapped: 17009
Number of HSP's successfully gapped: 8
Length of query: 594
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 475
Effective length of database: 68,045,334
Effective search space: 32321533650
Effective search space used: 32321533650
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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