ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf166m01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AM263198.1| Listeria welshimeri serovar 6b str. SLCC5334 com... 42 1.9
2gb|AF204401.1|AF204401 Streptomyces chrysomallus actinomycin syn... 42 1.9
3ref|NW_001091927.1| Theileria annulata strain Ankara clone C9 40 7.7
4ref|XM_545504.2| PREDICTED: Canis familiaris similar to Sodium c... 40 7.7
5ref|XM_815253.1| Trypanosoma cruzi strain CL Brener methyltransf... 40 7.7
6ref|XM_947287.1| Theileria annulata strain Ankara tRNA methyl tr... 40 7.7
7dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
8emb|AL356866.22| Human DNA sequence from clone RP11-211D10 on ch... 40 7.7
9emb|BX284669.12| Zebrafish DNA sequence from clone CH211-280E18 ... 40 7.7
10emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in... 40 7.7
11dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
12emb|BX276091.6| Zebrafish DNA sequence from clone CH211-267P9 in... 40 7.7
13emb|BX248393.5| Zebrafish DNA sequence from clone CH211-233O13, ... 40 7.7
14gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 7.7

>emb|AM263198.1| Listeria welshimeri serovar 6b str. SLCC5334 complete genome
          Length = 2814130
 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 442     acttaatcgattgattccaga 462
               |||||||||||||||||||||
Sbjct: 2060874 acttaatcgattgattccaga 2060854



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>gb|AF204401.1|AF204401 Streptomyces chrysomallus actinomycin synthetase III (acmC) gene,
           complete cds
          Length = 12744

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 292 ggcctgctcatcaccatggtc 312
           |||||||||||||||||||||
Sbjct: 868 ggcctgctcatcaccatggtc 888



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>ref|NW_001091927.1| Theileria annulata strain Ankara clone C9
          Length = 1979170

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 373     gtgttgtaaagttgatgtta 392
               ||||||||||||||||||||
Sbjct: 1295796 gtgttgtaaagttgatgtta 1295815



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>ref|XM_545504.2| PREDICTED: Canis familiaris similar to Sodium channel protein type
            VII alpha subunit (Putative voltage-gated sodium channel
            alpha subunit Nax) (Sodium channel protein, cardiac and
            skeletal muscle alpha-subunit) (LOC488382), mRNA
          Length = 5034

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 346  tcttgatttggaattgttct 365
            ||||||||||||||||||||
Sbjct: 1427 tcttgatttggaattgttct 1446



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>ref|XM_815253.1| Trypanosoma cruzi strain CL Brener methyltransferase
           (Tc00.1047053506247.320) partial mRNA
          Length = 1089

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 79  cgccggtcgcctccatcacc 98
           ||||||||||||||||||||
Sbjct: 313 cgccggtcgcctccatcacc 294



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>ref|XM_947287.1| Theileria annulata strain Ankara tRNA methyl transferase (TA12620)
           partial mRNA
          Length = 3213

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 gtgttgtaaagttgatgtta 392
           ||||||||||||||||||||
Sbjct: 288 gtgttgtaaagttgatgtta 269



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9
          Length = 22696651

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 21      gatctagatccaaaaacttg 40
               ||||||||||||||||||||
Sbjct: 9358227 gatctagatccaaaaacttg 9358246



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>emb|AL356866.22| Human DNA sequence from clone RP11-211D10 on chromosome 13 Contains a CpG
              island, complete sequence
          Length = 182321

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 174    cctaggggagcatgactatagaga 197
              ||||||||||| ||||||||||||
Sbjct: 177472 cctaggggagcgtgactatagaga 177449



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>emb|BX284669.12| Zebrafish DNA sequence from clone CH211-280E18 in linkage group 20,
             complete sequence
          Length = 153189

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   ttagccacctaggggagcat 186
             ||||||||||||||||||||
Sbjct: 68018 ttagccacctaggggagcat 68037



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>emb|BX530079.19| Zebrafish DNA sequence from clone DKEY-51A16 in linkage group 13,
             complete sequence
          Length = 166397

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   tcttgatttatgttcttgta 442
             ||||||||||||||||||||
Sbjct: 41951 tcttgatttatgttcttgta 41970



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>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBb0024J13
          Length = 127614

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 21    gatctagatccaaaaacttg 40
             ||||||||||||||||||||
Sbjct: 41641 gatctagatccaaaaacttg 41660



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>emb|BX276091.6| Zebrafish DNA sequence from clone CH211-267P9 in linkage group 5,
             complete sequence
          Length = 134612

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   tacttaatcgattgattcca 460
             ||||||||||||||||||||
Sbjct: 79948 tacttaatcgattgattcca 79929



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>emb|BX248393.5| Zebrafish DNA sequence from clone CH211-233O13, complete sequence
          Length = 166286

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 441  tacttaatcgattgattcca 460
            ||||||||||||||||||||
Sbjct: 2066 tacttaatcgattgattcca 2085



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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 63      ccacgccctccaccatcgcc 82
               ||||||||||||||||||||
Sbjct: 4146746 ccacgccctccaccatcgcc 4146727


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 80,748,655
Number of extensions: 4317375
Number of successful extensions: 68852
Number of sequences better than 10.0: 14
Number of HSP's gapped: 68852
Number of HSP's successfully gapped: 14
Length of query: 523
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 501
Effective length of database: 18,508,616,841
Effective search space: 9272817037341
Effective search space used: 9272817037341
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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