>Q80TZ9:RERE_MOUSE Arginine-glutamic acid dipeptide repeats protein - Mus musculus|
            (Mouse)
          Length = 1558
 Score = 36.6 bits (83), Expect = 0.75
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +2

Query: 35   PFAS*LTNHSAAMFSPPAQ--PRFDPLRPTSPTS*PFIAPSCYLRQRRQVRPPAATHPMR 208
            P +S  T+H  +   PP Q  P+  PL P+SP   P       L Q + + PPAA+HP  
Sbjct: 963  PLSSLSTHHPPSAHPPPLQLMPQSQPL-PSSPAQPPG------LTQSQSLPPPAASHPTT 1015

Query: 209  PLVQFAGASP 238
             L Q    SP
Sbjct: 1016 GLHQVPSQSP 1025

>P24892:NU4M_CAEEL NADH-ubiquinone oxidoreductase chain 4 - Caenorhabditis elegans|
          Length = 409

 Score = 34.3 bits (77), Expect = 3.7
 Identities = 20/58 (34%), Positives = 33/58 (56%)
 Frame = +2

Query: 1844 SMRTRSISSGLMQALGWLITILVTLLGLRQHTGGTKSIYPLSYFQVSIIMCSLLFLAV 2017
            +M ++  S  LM A G+  T++  L+G   HT G++ IY +S F  S ++  +LF  V
Sbjct: 266  TMSSKISSVMLMLAHGYTSTLMFYLIGEFYHTSGSRMIYFMSSFFSSSMIMGILFSVV 323

>Q9P2R6:RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein - Homo sapiens|
            (Human)
          Length = 1566

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +2

Query: 35   PFAS*LTNHSAAMFSPPAQ--PRFDPLRPTSPTS*PFIAPSCYLRQRRQVRPPAATHPMR 208
            P +S  T+H  +   PP Q  P+  PL P+SP   P       L Q + + PP A+HP  
Sbjct: 971  PLSSLSTHHPPSAHPPPLQLMPQSQPL-PSSPAQPPG------LTQSQNLPPPPASHPPT 1023

Query: 209  PLVQFAGASP 238
             L Q A   P
Sbjct: 1024 GLHQVAPQPP 1033


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 641,789,753
Number of extensions: 14635564
Number of successful extensions: 40964
Number of sequences better than 10.0: 3
Number of HSP's gapped: 40891
Number of HSP's successfully gapped: 3
Length of query: 1169
Length of database: 100,686,439
Length adjustment: 124
Effective length of query: 1045
Effective length of database: 66,673,859
Effective search space: 69674182655
Effective search space used: 69674182655
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)