| Clone Name | FLbaf172k02 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os02g02524:12002.t005602:unspliced-genomic MIR-interacting saposin-like protein precursor, putative, expressed| Length = 5451 Score = 70.7 bits (148), Expect(8) = 4e-50 Identities = 27/31 (87%), Positives = 31/31 (100%) Frame = +2 / +3 Query: 467 ELAEWIKTSSAESGNVSQALCQDISKHCQST 559 +L+EWIKTSSAESGNVS+ALC+DISKHCQST Sbjct: 4383 QLSEWIKTSSAESGNVSRALCEDISKHCQST 4475 Score = 68.9 bits (144), Expect(8) = 4e-50 Identities = 27/30 (90%), Positives = 28/30 (93%) Frame = +3 / +1 Query: 225 ISSEKPRNHLDLRNRLNSKGQREGKVIDYR 314 + EKPRNHLDLRNRLNSKGQREGKVIDYR Sbjct: 760 LMQEKPRNHLDLRNRLNSKGQREGKVIDYR 849 Score = 58.3 bits (121), Expect(8) = 4e-50 Identities = 24/27 (88%), Positives = 25/27 (92%) Frame = +3 / +3 Query: 312 RVSELRIVELLDDLCDKMQDYTLQKSE 392 RVSELR+VELLD LCDKMQDYTLQK E Sbjct: 2793 RVSELRVVELLDGLCDKMQDYTLQKVE 2873 Score = 43.7 bits (89), Expect(8) = 4e-50 Identities = 17/20 (85%), Positives = 19/20 (95%) Frame = +2 / +1 Query: 386 VGIRRERMGESSKLEQFSNW 445 VGIRR+RMGESS+LEQF NW Sbjct: 3070 VGIRRKRMGESSRLEQF*NW 3129 Score = 28.6 bits (56), Expect(8) = 4e-50 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = +3 / +3 Query: 177 DKCAACKAVAAELEI 221 DKCAACKAVA I Sbjct: 180 DKCAACKAVAVSSRI 224 Score = 25.4 bits (49), Expect(8) = 4e-50 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = +3 / +3 Query: 27 KKEAETGDRDRRREGAMEPRRATRR 101 K E G+R R ME RRAT R Sbjct: 42 KTSRERGERSRPGTETMETRRATYR 116 Score = 25.4 bits (49), Expect(8) = 4e-50 Identities = 12/33 (36%), Positives = 17/33 (51%) Frame = +2 / +1 Query: 557 TSATAPVDDEL*QHALTPRIYWTKQTQMVVWRA 655 +SAT +DDEL* ++ K Q W+A Sbjct: 4591 SSATIEIDDEL*HQSILVPSLSHKAKQAKTWKA 4689 Score = 23.5 bits (45), Expect(8) = 4e-50 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +1 / +3 Query: 766 LLC*EHSNSENYFAY*ITVTS 828 L+C*EHSN ITV S Sbjct: 4800 LIC*EHSNMRQILHTKITVES 4862 Score = 56.5 bits (117), Expect(6) = 3e-33 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -2 / -2 Query: 304 MTFPSR*PFEFKRLRKSK*FLGFS 233 MTFPSR*PFEFKRLRKSK*FLGFS Sbjct: 839 MTFPSR*PFEFKRLRKSK*FLGFS 768 Score = 53.3 bits (110), Expect(6) = 3e-33 Identities = 24/28 (85%), Positives = 24/28 (85%) Frame = -3 / -3 Query: 561 LVDWQCLLISWQRAWLTFPDSAELVFIH 478 LVD QCLLIS Q A LTFPDSAELVFIH Sbjct: 4477 LVD*QCLLISSQSALLTFPDSAELVFIH 4394 Score = 45.1 bits (92), Expect(6) = 3e-33 Identities = 19/30 (63%), Positives = 22/30 (73%) Frame = -3 / -1 Query: 381 ATYSLASYHIGHPEALRFEAR*LCSR*PSL 292 A Y+LASYHIGHPEA + EA LC+ * L Sbjct: 2862 AGYNLASYHIGHPEAQQLEAHLLCTT*TEL 2773 Score = 42.3 bits (86), Expect(6) = 3e-33 Identities = 14/22 (63%), Positives = 18/22 (81%) Frame = -1 / -3 Query: 449 VTSLKTAPVCYFHPFFLA*FRL 384 +TS KT P+CYFHP F +*F+L Sbjct: 3133 ITSFKTVPICYFHPSFFS*FQL 3068 Score = 28.1 bits (55), Expect(6) = 3e-33 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = -1 / -2 Query: 107 GSAAGRSSRLHRSLPPAISISSL 39 G + G SSRLHR P S+SSL Sbjct: 122 GGSVGCSSRLHRLRPRPRSLSSL 54 Score = 24.0 bits (46), Expect(6) = 3e-33 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = -2 / -2 Query: 235 SLEIPISSSAATALQAAH 182 +LEIPISSSA Q H Sbjct: 539 TLEIPISSSACKQDQQIH 486 Score = 49.6 bits (102), Expect(4) = 8e-21 Identities = 21/26 (80%), Positives = 23/26 (88%) Frame = -3 / -3 Query: 312 CSR*PSLHADLSNSSGYASPSDFLVS 235 C++*PSLHADL N SG ASPSDFLVS Sbjct: 847 CNQ*PSLHADLLNLSGCASPSDFLVS 770 Score = 42.3 bits (86), Expect(4) = 8e-21 Identities = 19/31 (61%), Positives = 20/31 (64%) Frame = -2 / -2 Query: 559 CGLAVFANILAKGLAHVPGFC*ACFYPLRKL 467 C L VFANI K A + FC A FYPLRKL Sbjct: 4475 CRLTVFANIFTKCSADIS*FCGARFYPLRKL 4383 Score = 39.1 bits (79), Expect(4) = 8e-21 Identities = 19/27 (70%), Positives = 21/27 (77%) Frame = -1 / -2 Query: 392 FRLLQRIVLHLIT*VIQKLYDSKLADS 312 F LLQ I+LHLIT* IQKL +SKL S Sbjct: 2873 FYLLQGIILHLIT*AIQKLNNSKLTYS 2793 Score = 36.8 bits (74), Expect(4) = 8e-21 Identities = 15/20 (75%), Positives = 16/20 (80%) Frame = -2 / -1 Query: 445 PV*KLLQFATFTHSFSPDSD 386 PV KL Q ATFTH FSPDS+ Sbjct: 3129 PVLKLFQSATFTHPFSPDSN 3070 Score = 48.7 bits (100), Expect(5) = 4e-19 Identities = 22/26 (84%), Positives = 24/26 (92%) Frame = +2 / +3 Query: 236 ETKKSLGLA*PLEFERSA*REGHRLQ 313 ETKKSLGLA PL+F+RSA*REGH LQ Sbjct: 771 ETKKSLGLAQPLKFKRSA*REGH*LQ 848 Score = 42.3 bits (86), Expect(5) = 4e-19 Identities = 15/19 (78%), Positives = 18/19 (94%) Frame = +3 / +2 Query: 390 ESGEKEWVKVANWSSFQTG 446 ESGEK WVKVA+W+SF+TG Sbjct: 3074 ESGEKGWVKVADWNSFKTG 3130 Score = 33.6 bits (67), Expect(5) = 4e-19 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = +1 / +2 Query: 478 VDKNKLSRIREREPGPLPGY*QTLPVHK 561 VDKN+L RIR+ + L Y*QTL V+K Sbjct: 4394 VDKNELRRIRKCQQSTL*RY*QTLSVYK 4477 Score = 33.1 bits (66), Expect(5) = 4e-19 Identities = 18/26 (69%), Positives = 21/26 (80%) Frame = +2 / +2 Query: 308 LQSQRASNRRASG*PM**DARLYVAE 385 +QS+ AS+ ASG PM**DARLY AE Sbjct: 2789 VQSK*ASSC*ASGWPM**DARLYPAE 2866 Score = 23.1 bits (44), Expect(5) = 4e-19 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +3 / +1 Query: 183 CAACKAVAAELEIGISS 233 C + AELEIGISS Sbjct: 487 CIC*SCLQAELEIGISS 537 Score = 47.8 bits (98), Expect(4) = 7e-14 Identities = 19/21 (90%), Positives = 20/21 (95%) Frame = +1 / +2 Query: 238 NQEITWTCVTA*IRKVSVKGR 300 NQEITWTC TA*I+KVSVKGR Sbjct: 773 NQEITWTCATA*IQKVSVKGR 835 Score = 33.1 bits (66), Expect(4) = 7e-14 Identities = 17/33 (51%), Positives = 20/33 (60%) Frame = +3 / +1 Query: 468 SLRSG*KQAQQNPGT*ARPFARILANTASPQAL 566 S SG*K+A QN A F +ILANT S Q + Sbjct: 4384 SFLSG*KRAPQNQEMSAEHFVKILANTVSLQGM 4482 Score = 32.7 bits (65), Expect(4) = 7e-14 Identities = 11/14 (78%), Positives = 11/14 (78%) Frame = +1 / +1 Query: 343 WMTYVIRCKTIRCR 384 WM YVIRCK I CR Sbjct: 2824 WMAYVIRCKIIPCR 2865 Score = 29.9 bits (59), Expect(4) = 7e-14 Identities = 14/21 (66%), Positives = 16/21 (76%) Frame = +1 / +3 Query: 385 SRNQARKNG*K*QTGAVFKLV 447 S NQ +K+G*K*Q G V KLV Sbjct: 3069 SWNQEKKDG*K*QIGTVLKLV 3131 Score = 49.6 bits (102), Expect = 3e-05 Identities = 21/26 (80%), Positives = 23/26 (88%) Frame = -1 / -1 Query: 311 VVDDLPFTLTFRIQAVTQVQVISWFL 234 V++DLPFTLTF I AV QVQVISWFL Sbjct: 846 VINDLPFTLTF*I*AVAQVQVISWFL 769
>LOC_Os09g36640:12009.t03140:unspliced-genomic hypothetical protein| Length = 1140 Score = 38.2 bits (77), Expect(2) = 0.001 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = +3 / -1 Query: 447 YWRKLRTSLRSG*KQAQQNPGT*ARPFARILANTASPQALRPRSTMNYNSTR 602 YWR+ + G A G +RP A A P + P + MNYN+ R Sbjct: 972 YWRRSSVGVGRGSTTADDGHGIASRPHVGASAGVARPCEISPTAVMNYNAPR 817 Score = 23.5 bits (45), Expect(2) = 0.001 Identities = 7/12 (58%), Positives = 8/12 (66%) Frame = +3 / -3 Query: 630 KHRWLSGERQGR 665 +HRWL R GR Sbjct: 790 RHRWLPSRRSGR 755
>LOC_Os06g19820:12006.t01800:unspliced-genomic conserved hypothetical protein| Length = 1572 Score = 37.3 bits (75), Expect(2) = 0.007 Identities = 18/52 (34%), Positives = 24/52 (46%) Frame = +3 / +2 Query: 447 YWRKLRTSLRSG*KQAQQNPGT*ARPFARILANTASPQALRPRSTMNYNSTR 602 YWR+ SG G +RP A A A P+A+ P + MN N+ R Sbjct: 902 YWRRSSVGAGSGSTAVDGGHGIASRPNAGASAGIARPRAISPTAVMNCNAPR 1057 Score = 22.1 bits (42), Expect(2) = 0.007 Identities = 7/12 (58%), Positives = 8/12 (66%) Frame = +3 / +1 Query: 630 KHRWLSGERQGR 665 +HRWL R GR Sbjct: 1084 RHRWLPSRRFGR 1119
>LOC_Os06g39470:12006.t03645:unspliced-genomic 10-deacetylbaccatin III 10-O-acetyltransferase, putative, expressed| Length = 1671 Score = 36.3 bits (73), Expect(2) = 0.099 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = +3 / -1 Query: 447 YWRKLRTSLRSG*KQAQQNPGT*ARPFARILANTASPQALRPRSTMN 587 YWR+ SG A G +RP A A A P+A+ P + MN Sbjct: 786 YWRRSSVGTGSGPTAADGGHGIASRPHAGASAGAARPRAISPTAVMN 646 Score = 22.6 bits (43), Expect(2) = 0.099 Identities = 10/17 (58%), Positives = 10/17 (58%) Frame = +3 / -2 Query: 57 RRREGAMEPRRATRRRS 107 RR G PRR RRRS Sbjct: 1178 RR*SGTGRPRRRRRRRS 1128
>LOC_Os11g02650:12011.t00158:unspliced-genomic transferase, transferring glycosyl groups, putative| Length = 833 Score = 35.0 bits (70), Expect = 0.72 Identities = 17/52 (32%), Positives = 23/52 (44%) Frame = +3 / +2 Query: 447 YWRKLRTSLRSG*KQAQQNPGT*ARPFARILANTASPQALRPRSTMNYNSTR 602 YWR+ SG A G +RP A A P+A+ + MN N+ R Sbjct: 236 YWRRSSVGAGSGSTAADGRHGIASRPHAGASTGVARPRAISSTAVMNCNAPR 391
>LOC_Os03g29180:12003.t02537:unspliced-genomic ubiquinone biosynthesis protein COQ9, mitochondrial precursor,| putative, expressed Length = 5995 Score = 27.2 bits (53), Expect(2) = 1.3 Identities = 19/58 (32%), Positives = 24/58 (41%) Frame = +2 / -1 Query: 395 RRERMGESSKLEQFSNWLLEETEDELAEWIKTSSAESGNVSQALCQDISKHCQSTSAT 568 RRE++ E L F N + E I+T GN+S QD SK S T Sbjct: 3931 RREKLDELKLLHLFCNIDSNKNEKIRINIIRTFLVLIGNLSTLFLQDNSKGFTRESQT 3758 Score = 24.0 bits (46), Expect(2) = 1.3 Identities = 8/24 (33%), Positives = 16/24 (66%) Frame = +2 / -1 Query: 689 CDILASVFLALMLLS*RGTCNFPH 760 C++ + +FL++ L G+CN P+ Sbjct: 3703 CNVPSDLFLSISTLETFGSCN*PN 3632
>LOC_Os12g38280:12012.t03509:unspliced-genomic transposon protein, putative, unclassified| Length = 6508 Score = 34.1 bits (68), Expect = 1.4 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = +3 / +1 Query: 12 QTHTTKKEAETGDRDRRREGAMEPRRATRRRS 107 ++H+T A G R RRREG R RRRS Sbjct: 1021 RSHSTAVRAPAGARARRREGPQRRRHLRRRRS 1116
>LOC_Os03g27040:12003.t02384:unspliced-genomic copper-transporting ATPase PAA1, putative, expressed| Length = 2382 Score = 33.1 bits (66), Expect = 2.6 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -1 / -2 Query: 119 QDGAGSAAGRSSRLHRSLPPAISISS 42 Q G+ +A RS R+HR+ PAI +SS Sbjct: 545 QPGSRESASRSRRIHRTTSPAIKLSS 468
>LOC_Os01g41710:12001.t03692:unspliced-genomic chlorophyll a-b binding protein 2, chloroplast precursor, putative,| expressed Length = 1209 Score = 29.0 bits (57), Expect(2) = 3.6 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +3 / -2 Query: 27 KKEAETGDRDRRREGAMEPRRATRRRSGT 113 ++ G RR PRRA RRR GT Sbjct: 677 RRRGRAGRSCRRGRAGRRPRRAARRRCGT 591 Score = 24.0 bits (46), Expect(2) = 3.6 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +3 / -3 Query: 642 LSGERQGREATVGNEHV 692 L+G+R+GRE G HV Sbjct: 133 LAGQRRGREGHGGGGHV 83
>LOC_Os04g53930:12004.t04866:unspliced-genomic organic cation transporter protein, putative, expressed| Length = 3366 Score = 32.2 bits (64), Expect = 4.9 Identities = 15/48 (31%), Positives = 26/48 (54%) Frame = +3 / +2 Query: 495 QQNPGT*ARPFARILANTASPQALRPRSTMNYNSTR*RPVFIGQSKHR 638 +Q PG AR AR+ + A+P+ LRP + + + R + + + HR Sbjct: 2297 RQRPGELARRDARLPPHRAAPRPLRPEAARHRHHASQRHLLLRRQPHR 2440
>LOC_Os03g48170:12003.t04176:unspliced-genomic isoamylase N-terminal domain containing protein, expressed| Length = 4913 Score = 32.2 bits (64), Expect = 4.9 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +3 / -2 Query: 21 TTKKEAETGDRDRRREGAMEPRRATRRRSGT 113 TT+ A R RRR G PRR RR GT Sbjct: 385 TTRARASRRRRPRRRRGRPSPRRRARRGWGT 293
>LOC_Os04g35730:12004.t03243:unspliced-genomic serine/arginine repetitive matrix protein 1, putative| Length = 693 Score = 31.8 bits (63), Expect = 6.7 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +3 / -1 Query: 3 QKGQTHTTKKEAETGDRDRRREGAMEPRRATRRRSGTV 116 Q+ Q +E +TGDRD PRR RRR G V Sbjct: 492 QQEQPGDQAQEQQTGDRDHHCYHHDVPRRRRRRRRGVV 379
>LOC_Os03g13614:12003.t01155:unspliced-genomic transcription factor HBP-1a, putative, expressed| Length = 11552 Score = 31.8 bits (63), Expect = 6.7 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = +3 / +1 Query: 264 NRLNSKGQREGKVIDYRVSELRIVELLDDLCDKMQDYTLQKSE 392 N LN Q K DY +S LR LL++ C + T+ KSE Sbjct: 4435 NFLNVDHQYGHKYFDYHLSLLRSTMLLENYC*RSVSETVSKSE 4563
>LOC_Os01g65900:12001.t05951:unspliced-genomic chitin-inducible gibberellin-responsive protein 2, putative,| expressed Length = 3674 Score = 31.8 bits (63), Expect = 6.7 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +3 / -1 Query: 3 QKGQTHTTKKEAETGDRDRRREGAMEPRRATRRR 104 + G+ K+ E G R RREG RR RRR Sbjct: 107 RSGEGEVGKRRTEMGRRGSRREGRKRGRREERRR 6
>LOC_Os05g08030:12005.t00684:unspliced-genomic transposon protein, putative, unclassified| Length = 1166 Score = 26.3 bits (51), Expect(2) = 8.3 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 / -2 Query: 451 GGN*GRACGVDKNKLSRIRER 513 GGN R CG N++ R RER Sbjct: 103 GGNGRRRCGEGLNRVGRGRER 41 Score = 25.4 bits (49), Expect(2) = 8.3 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = +3 / -2 Query: 3 QKGQTHTTKKEAETGDRDRRREGAMEPRR 89 +KG ++ +G R RRR G P+R Sbjct: 355 EKGGRSGGRRRRGSGRRGRRRSGGRRPKR 269
>LOC_Os09g17740:12009.t01559:unspliced-genomic chlorophyll a-b binding protein 1, chloroplast precursor, putative,| expressed Length = 1467 Score = 31.3 bits (62), Expect = 9.2 Identities = 13/28 (46%), Positives = 14/28 (50%) Frame = +3 / -1 Query: 30 KEAETGDRDRRREGAMEPRRATRRRSGT 113 + G R RR PRRA RRR GT Sbjct: 747 RRGRAGRRRRRGRAGRRPRRAARRRCGT 664
>LOC_Os08g14180:12008.t01294:unspliced-genomic flavonol 4-sulfotransferase, putative, expressed| Length = 4598 Score = 31.3 bits (62), Expect = 9.2 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +3 / -2 Query: 45 GDRDRRREGAMEPRRATRRRS 107 G R RRR A PRRA RRR+ Sbjct: 298 GARGRRRRAAWRPRRAPRRRA 236
>LOC_Os03g58590:12003.t05113:unspliced-genomic cactin, putative, expressed| Length = 6644 Score = 31.3 bits (62), Expect = 9.2 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = +3 / +3 Query: 327 RIVELLDDLCDKMQDYTLQKSESGEKEWVKVANWSSF 437 R+ +L + C+K Q Y + +S KEW+ + N SF Sbjct: 2613 RLSFILSNKCNKFQIYIINILDSLLKEWLPITNCLSF 2723
>LOC_Os02g54830:12002.t05061:unspliced-genomic RING-H2 finger protein ATL2C, putative, expressed| Length = 1772 Score = 31.3 bits (62), Expect = 9.2 Identities = 13/21 (61%), Positives = 13/21 (61%) Frame = +3 / -1 Query: 51 RDRRREGAMEPRRATRRRSGT 113 R R R G PRR RRRSGT Sbjct: 575 RQRSRTGPCHPRRRRRRRSGT 513
>LOC_Os02g38460:12002.t03484:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 2373 Score = 31.3 bits (62), Expect = 9.2 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 / +2 Query: 12 QTHTTKKEAETGDRDRRREGAMEPRRATRRRSGTV 116 ++H+T A G+R RRR G RRRS T+ Sbjct: 344 RSHSTAARAPAGERARRRGGPRRRHHLRRRRSLTL 448 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 269,605,347 Number of extensions: 3728543 Number of successful extensions: 20617 Number of sequences better than 10.0: 20 Length of query: 280 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 231 Effective length of database: 52,856,264 Effective search space: 12209796984 Effective search space used: 12209796984 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)