ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf172k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOC_Os02g02524:12002.t005602:unspliced-genomic MIR-interacti... 71 4e-50
2LOC_Os09g36640:12009.t03140:unspliced-genomic hypothetical p... 38 0.001
3LOC_Os06g19820:12006.t01800:unspliced-genomic conserved hypo... 37 0.007
4LOC_Os06g39470:12006.t03645:unspliced-genomic 10-deacetylbac... 36 0.099
5LOC_Os11g02650:12011.t00158:unspliced-genomic transferase, t... 35 0.72
6LOC_Os03g29180:12003.t02537:unspliced-genomic ubiquinone bio... 27 1.3
7LOC_Os12g38280:12012.t03509:unspliced-genomic transposon pro... 34 1.4
8LOC_Os03g27040:12003.t02384:unspliced-genomic copper-transpo... 33 2.6
9LOC_Os01g41710:12001.t03692:unspliced-genomic chlorophyll a-... 29 3.6
10LOC_Os04g53930:12004.t04866:unspliced-genomic organic cation... 32 4.9
11LOC_Os03g48170:12003.t04176:unspliced-genomic isoamylase N-t... 32 4.9
12LOC_Os04g35730:12004.t03243:unspliced-genomic serine/arginin... 32 6.7
13LOC_Os03g13614:12003.t01155:unspliced-genomic transcription ... 32 6.7
14LOC_Os01g65900:12001.t05951:unspliced-genomic chitin-inducib... 32 6.7
15LOC_Os05g08030:12005.t00684:unspliced-genomic transposon pro... 26 8.3
16LOC_Os09g17740:12009.t01559:unspliced-genomic chlorophyll a-... 31 9.2
17LOC_Os08g14180:12008.t01294:unspliced-genomic flavonol 4-sul... 31 9.2
18LOC_Os03g58590:12003.t05113:unspliced-genomic cactin, putati... 31 9.2
19LOC_Os02g54830:12002.t05061:unspliced-genomic RING-H2 finger... 31 9.2
20LOC_Os02g38460:12002.t03484:unspliced-genomic retrotransposo... 31 9.2

>LOC_Os02g02524:12002.t005602:unspliced-genomic MIR-interacting saposin-like protein precursor, putative, expressed|
          Length = 5451
 Score = 70.7 bits (148), Expect(8) = 4e-50
 Identities = 27/31 (87%), Positives = 31/31 (100%)
 Frame = +2 / +3

                                           
Query: 467  ELAEWIKTSSAESGNVSQALCQDISKHCQST 559
            +L+EWIKTSSAESGNVS+ALC+DISKHCQST
Sbjct: 4383 QLSEWIKTSSAESGNVSRALCEDISKHCQST 4475



 Score = 68.9 bits (144), Expect(8) = 4e-50
 Identities = 27/30 (90%), Positives = 28/30 (93%)
 Frame = +3 / +1

                                         
Query: 225 ISSEKPRNHLDLRNRLNSKGQREGKVIDYR 314
           +  EKPRNHLDLRNRLNSKGQREGKVIDYR
Sbjct: 760 LMQEKPRNHLDLRNRLNSKGQREGKVIDYR 849



 Score = 58.3 bits (121), Expect(8) = 4e-50
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = +3 / +3

                                       
Query: 312  RVSELRIVELLDDLCDKMQDYTLQKSE 392
            RVSELR+VELLD LCDKMQDYTLQK E
Sbjct: 2793 RVSELRVVELLDGLCDKMQDYTLQKVE 2873



 Score = 43.7 bits (89), Expect(8) = 4e-50
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +2 / +1

                                
Query: 386  VGIRRERMGESSKLEQFSNW 445
            VGIRR+RMGESS+LEQF NW
Sbjct: 3070 VGIRRKRMGESSRLEQF*NW 3129



 Score = 28.6 bits (56), Expect(8) = 4e-50
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3 / +3

                          
Query: 177 DKCAACKAVAAELEI 221
           DKCAACKAVA    I
Sbjct: 180 DKCAACKAVAVSSRI 224



 Score = 25.4 bits (49), Expect(8) = 4e-50
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3 / +3

                                    
Query: 27  KKEAETGDRDRRREGAMEPRRATRR 101
           K   E G+R R     ME RRAT R
Sbjct: 42  KTSRERGERSRPGTETMETRRATYR 116



 Score = 25.4 bits (49), Expect(8) = 4e-50
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2 / +1

                                             
Query: 557  TSATAPVDDEL*QHALTPRIYWTKQTQMVVWRA 655
            +SAT  +DDEL*  ++       K  Q   W+A
Sbjct: 4591 SSATIEIDDEL*HQSILVPSLSHKAKQAKTWKA 4689



 Score = 23.5 bits (45), Expect(8) = 4e-50
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +1 / +3

                                 
Query: 766  LLC*EHSNSENYFAY*ITVTS 828
            L+C*EHSN        ITV S
Sbjct: 4800 LIC*EHSNMRQILHTKITVES 4862



 Score = 56.5 bits (117), Expect(6) = 3e-33
 Identities = 24/24 (100%), Positives = 24/24 (100%)
 Frame = -2 / -2

                                   
Query: 304 MTFPSR*PFEFKRLRKSK*FLGFS 233
           MTFPSR*PFEFKRLRKSK*FLGFS
Sbjct: 839 MTFPSR*PFEFKRLRKSK*FLGFS 768



 Score = 53.3 bits (110), Expect(6) = 3e-33
 Identities = 24/28 (85%), Positives = 24/28 (85%)
 Frame = -3 / -3

                                        
Query: 561  LVDWQCLLISWQRAWLTFPDSAELVFIH 478
            LVD QCLLIS Q A LTFPDSAELVFIH
Sbjct: 4477 LVD*QCLLISSQSALLTFPDSAELVFIH 4394



 Score = 45.1 bits (92), Expect(6) = 3e-33
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = -3 / -1

                                          
Query: 381  ATYSLASYHIGHPEALRFEAR*LCSR*PSL 292
            A Y+LASYHIGHPEA + EA  LC+ *  L
Sbjct: 2862 AGYNLASYHIGHPEAQQLEAHLLCTT*TEL 2773



 Score = 42.3 bits (86), Expect(6) = 3e-33
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = -1 / -3

                                  
Query: 449  VTSLKTAPVCYFHPFFLA*FRL 384
            +TS KT P+CYFHP F +*F+L
Sbjct: 3133 ITSFKTVPICYFHPSFFS*FQL 3068



 Score = 28.1 bits (55), Expect(6) = 3e-33
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1 / -2

                                  
Query: 107 GSAAGRSSRLHRSLPPAISISSL 39
           G + G SSRLHR  P   S+SSL
Sbjct: 122 GGSVGCSSRLHRLRPRPRSLSSL 54



 Score = 24.0 bits (46), Expect(6) = 3e-33
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -2 / -2

                             
Query: 235 SLEIPISSSAATALQAAH 182
           +LEIPISSSA    Q  H
Sbjct: 539 TLEIPISSSACKQDQQIH 486



 Score = 49.6 bits (102), Expect(4) = 8e-21
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = -3 / -3

                                     
Query: 312 CSR*PSLHADLSNSSGYASPSDFLVS 235
           C++*PSLHADL N SG ASPSDFLVS
Sbjct: 847 CNQ*PSLHADLLNLSGCASPSDFLVS 770



 Score = 42.3 bits (86), Expect(4) = 8e-21
 Identities = 19/31 (61%), Positives = 20/31 (64%)
 Frame = -2 / -2

                                           
Query: 559  CGLAVFANILAKGLAHVPGFC*ACFYPLRKL 467
            C L VFANI  K  A +  FC A FYPLRKL
Sbjct: 4475 CRLTVFANIFTKCSADIS*FCGARFYPLRKL 4383



 Score = 39.1 bits (79), Expect(4) = 8e-21
 Identities = 19/27 (70%), Positives = 21/27 (77%)
 Frame = -1 / -2

                                       
Query: 392  FRLLQRIVLHLIT*VIQKLYDSKLADS 312
            F LLQ I+LHLIT* IQKL +SKL  S
Sbjct: 2873 FYLLQGIILHLIT*AIQKLNNSKLTYS 2793



 Score = 36.8 bits (74), Expect(4) = 8e-21
 Identities = 15/20 (75%), Positives = 16/20 (80%)
 Frame = -2 / -1

                                
Query: 445  PV*KLLQFATFTHSFSPDSD 386
            PV KL Q ATFTH FSPDS+
Sbjct: 3129 PVLKLFQSATFTHPFSPDSN 3070



 Score = 48.7 bits (100), Expect(5) = 4e-19
 Identities = 22/26 (84%), Positives = 24/26 (92%)
 Frame = +2 / +3

                                     
Query: 236 ETKKSLGLA*PLEFERSA*REGHRLQ 313
           ETKKSLGLA PL+F+RSA*REGH LQ
Sbjct: 771 ETKKSLGLAQPLKFKRSA*REGH*LQ 848



 Score = 42.3 bits (86), Expect(5) = 4e-19
 Identities = 15/19 (78%), Positives = 18/19 (94%)
 Frame = +3 / +2

                               
Query: 390  ESGEKEWVKVANWSSFQTG 446
            ESGEK WVKVA+W+SF+TG
Sbjct: 3074 ESGEKGWVKVADWNSFKTG 3130



 Score = 33.6 bits (67), Expect(5) = 4e-19
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +1 / +2

                                        
Query: 478  VDKNKLSRIREREPGPLPGY*QTLPVHK 561
            VDKN+L RIR+ +   L  Y*QTL V+K
Sbjct: 4394 VDKNELRRIRKCQQSTL*RY*QTLSVYK 4477



 Score = 33.1 bits (66), Expect(5) = 4e-19
 Identities = 18/26 (69%), Positives = 21/26 (80%)
 Frame = +2 / +2

                                      
Query: 308  LQSQRASNRRASG*PM**DARLYVAE 385
            +QS+ AS+  ASG PM**DARLY AE
Sbjct: 2789 VQSK*ASSC*ASGWPM**DARLYPAE 2866



 Score = 23.1 bits (44), Expect(5) = 4e-19
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3 / +1

                            
Query: 183 CAACKAVAAELEIGISS 233
           C     + AELEIGISS
Sbjct: 487 CIC*SCLQAELEIGISS 537



 Score = 47.8 bits (98), Expect(4) = 7e-14
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +1 / +2

                                
Query: 238 NQEITWTCVTA*IRKVSVKGR 300
           NQEITWTC TA*I+KVSVKGR
Sbjct: 773 NQEITWTCATA*IQKVSVKGR 835



 Score = 33.1 bits (66), Expect(4) = 7e-14
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = +3 / +1

                                             
Query: 468  SLRSG*KQAQQNPGT*ARPFARILANTASPQAL 566
            S  SG*K+A QN    A  F +ILANT S Q +
Sbjct: 4384 SFLSG*KRAPQNQEMSAEHFVKILANTVSLQGM 4482



 Score = 32.7 bits (65), Expect(4) = 7e-14
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +1 / +1

                          
Query: 343  WMTYVIRCKTIRCR 384
            WM YVIRCK I CR
Sbjct: 2824 WMAYVIRCKIIPCR 2865



 Score = 29.9 bits (59), Expect(4) = 7e-14
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +1 / +3

                                 
Query: 385  SRNQARKNG*K*QTGAVFKLV 447
            S NQ +K+G*K*Q G V KLV
Sbjct: 3069 SWNQEKKDG*K*QIGTVLKLV 3131



 Score = 49.6 bits (102), Expect = 3e-05
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = -1 / -1

                                     
Query: 311 VVDDLPFTLTFRIQAVTQVQVISWFL 234
           V++DLPFTLTF I AV QVQVISWFL
Sbjct: 846 VINDLPFTLTF*I*AVAQVQVISWFL 769



to top

>LOC_Os09g36640:12009.t03140:unspliced-genomic hypothetical protein|
          Length = 1140

 Score = 38.2 bits (77), Expect(2) = 0.001
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3 / -1

                                                               
Query: 447 YWRKLRTSLRSG*KQAQQNPGT*ARPFARILANTASPQALRPRSTMNYNSTR 602
           YWR+    +  G   A    G  +RP     A  A P  + P + MNYN+ R
Sbjct: 972 YWRRSSVGVGRGSTTADDGHGIASRPHVGASAGVARPCEISPTAVMNYNAPR 817



 Score = 23.5 bits (45), Expect(2) = 0.001
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3 / -3

                       
Query: 630 KHRWLSGERQGR 665
           +HRWL   R GR
Sbjct: 790 RHRWLPSRRSGR 755



to top

>LOC_Os06g19820:12006.t01800:unspliced-genomic conserved hypothetical protein|
          Length = 1572

 Score = 37.3 bits (75), Expect(2) = 0.007
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +3 / +2

                                                                
Query: 447  YWRKLRTSLRSG*KQAQQNPGT*ARPFARILANTASPQALRPRSTMNYNSTR 602
            YWR+      SG        G  +RP A   A  A P+A+ P + MN N+ R
Sbjct: 902  YWRRSSVGAGSGSTAVDGGHGIASRPNAGASAGIARPRAISPTAVMNCNAPR 1057



 Score = 22.1 bits (42), Expect(2) = 0.007
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3 / +1

                        
Query: 630  KHRWLSGERQGR 665
            +HRWL   R GR
Sbjct: 1084 RHRWLPSRRFGR 1119



to top

>LOC_Os06g39470:12006.t03645:unspliced-genomic 10-deacetylbaccatin III 10-O-acetyltransferase, putative, expressed|
          Length = 1671

 Score = 36.3 bits (73), Expect(2) = 0.099
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = +3 / -1

                                                          
Query: 447 YWRKLRTSLRSG*KQAQQNPGT*ARPFARILANTASPQALRPRSTMN 587
           YWR+      SG   A    G  +RP A   A  A P+A+ P + MN
Sbjct: 786 YWRRSSVGTGSGPTAADGGHGIASRPHAGASAGAARPRAISPTAVMN 646



 Score = 22.6 bits (43), Expect(2) = 0.099
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3 / -2

                             
Query: 57   RRREGAMEPRRATRRRS 107
            RR  G   PRR  RRRS
Sbjct: 1178 RR*SGTGRPRRRRRRRS 1128



to top

>LOC_Os11g02650:12011.t00158:unspliced-genomic transferase, transferring glycosyl groups, putative|
          Length = 833

 Score = 35.0 bits (70), Expect = 0.72
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3 / +2

                                                               
Query: 447 YWRKLRTSLRSG*KQAQQNPGT*ARPFARILANTASPQALRPRSTMNYNSTR 602
           YWR+      SG   A    G  +RP A      A P+A+   + MN N+ R
Sbjct: 236 YWRRSSVGAGSGSTAADGRHGIASRPHAGASTGVARPRAISSTAVMNCNAPR 391



to top

>LOC_Os03g29180:12003.t02537:unspliced-genomic ubiquinone biosynthesis protein COQ9, mitochondrial precursor,|
            putative, expressed
          Length = 5995

 Score = 27.2 bits (53), Expect(2) = 1.3
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = +2 / -1

                                                                      
Query: 395  RRERMGESSKLEQFSNWLLEETEDELAEWIKTSSAESGNVSQALCQDISKHCQSTSAT 568
            RRE++ E   L  F N    + E      I+T     GN+S    QD SK     S T
Sbjct: 3931 RREKLDELKLLHLFCNIDSNKNEKIRINIIRTFLVLIGNLSTLFLQDNSKGFTRESQT 3758



 Score = 24.0 bits (46), Expect(2) = 1.3
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2 / -1

                                    
Query: 689  CDILASVFLALMLLS*RGTCNFPH 760
            C++ + +FL++  L   G+CN P+
Sbjct: 3703 CNVPSDLFLSISTLETFGSCN*PN 3632



to top

>LOC_Os12g38280:12012.t03509:unspliced-genomic transposon protein, putative, unclassified|
          Length = 6508

 Score = 34.1 bits (68), Expect = 1.4
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3 / +1

                                            
Query: 12   QTHTTKKEAETGDRDRRREGAMEPRRATRRRS 107
            ++H+T   A  G R RRREG    R   RRRS
Sbjct: 1021 RSHSTAVRAPAGARARRREGPQRRRHLRRRRS 1116



to top

>LOC_Os03g27040:12003.t02384:unspliced-genomic copper-transporting ATPase PAA1, putative, expressed|
          Length = 2382

 Score = 33.1 bits (66), Expect = 2.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -1 / -2

                                     
Query: 119 QDGAGSAAGRSSRLHRSLPPAISISS 42
           Q G+  +A RS R+HR+  PAI +SS
Sbjct: 545 QPGSRESASRSRRIHRTTSPAIKLSS 468



to top

>LOC_Os01g41710:12001.t03692:unspliced-genomic chlorophyll a-b binding protein 2, chloroplast precursor, putative,|
           expressed
          Length = 1209

 Score = 29.0 bits (57), Expect(2) = 3.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +3 / -2

                                        
Query: 27  KKEAETGDRDRRREGAMEPRRATRRRSGT 113
           ++    G   RR      PRRA RRR GT
Sbjct: 677 RRRGRAGRSCRRGRAGRRPRRAARRRCGT 591



 Score = 24.0 bits (46), Expect(2) = 3.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3 / -3

                            
Query: 642 LSGERQGREATVGNEHV 692
           L+G+R+GRE   G  HV
Sbjct: 133 LAGQRRGREGHGGGGHV 83



to top

>LOC_Os04g53930:12004.t04866:unspliced-genomic organic cation transporter protein, putative, expressed|
          Length = 3366

 Score = 32.2 bits (64), Expect = 4.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3 / +2

                                                            
Query: 495  QQNPGT*ARPFARILANTASPQALRPRSTMNYNSTR*RPVFIGQSKHR 638
            +Q PG  AR  AR+  + A+P+ LRP +  + +    R + + +  HR
Sbjct: 2297 RQRPGELARRDARLPPHRAAPRPLRPEAARHRHHASQRHLLLRRQPHR 2440



to top

>LOC_Os03g48170:12003.t04176:unspliced-genomic isoamylase N-terminal domain containing protein, expressed|
          Length = 4913

 Score = 32.2 bits (64), Expect = 4.9
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3 / -2

                                          
Query: 21  TTKKEAETGDRDRRREGAMEPRRATRRRSGT 113
           TT+  A    R RRR G   PRR  RR  GT
Sbjct: 385 TTRARASRRRRPRRRRGRPSPRRRARRGWGT 293



to top

>LOC_Os04g35730:12004.t03243:unspliced-genomic serine/arginine repetitive matrix protein 1, putative|
          Length = 693

 Score = 31.8 bits (63), Expect = 6.7
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = +3 / -1

                                                 
Query: 3   QKGQTHTTKKEAETGDRDRRREGAMEPRRATRRRSGTV 116
           Q+ Q     +E +TGDRD        PRR  RRR G V
Sbjct: 492 QQEQPGDQAQEQQTGDRDHHCYHHDVPRRRRRRRRGVV 379



to top

>LOC_Os03g13614:12003.t01155:unspliced-genomic transcription factor HBP-1a, putative, expressed|
          Length = 11552

 Score = 31.8 bits (63), Expect = 6.7
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +3 / +1

                                                       
Query: 264  NRLNSKGQREGKVIDYRVSELRIVELLDDLCDKMQDYTLQKSE 392
            N LN   Q   K  DY +S LR   LL++ C +    T+ KSE
Sbjct: 4435 NFLNVDHQYGHKYFDYHLSLLRSTMLLENYC*RSVSETVSKSE 4563



to top

>LOC_Os01g65900:12001.t05951:unspliced-genomic chitin-inducible gibberellin-responsive protein 2, putative,|
           expressed
          Length = 3674

 Score = 31.8 bits (63), Expect = 6.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3 / -1

                                             
Query: 3   QKGQTHTTKKEAETGDRDRRREGAMEPRRATRRR 104
           + G+    K+  E G R  RREG    RR  RRR
Sbjct: 107 RSGEGEVGKRRTEMGRRGSRREGRKRGRREERRR 6



to top

>LOC_Os05g08030:12005.t00684:unspliced-genomic transposon protein, putative, unclassified|
          Length = 1166

 Score = 26.3 bits (51), Expect(2) = 8.3
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1 / -2

                                
Query: 451 GGN*GRACGVDKNKLSRIRER 513
           GGN  R CG   N++ R RER
Sbjct: 103 GGNGRRRCGEGLNRVGRGRER 41



 Score = 25.4 bits (49), Expect(2) = 8.3
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3 / -2

                                        
Query: 3   QKGQTHTTKKEAETGDRDRRREGAMEPRR 89
           +KG     ++   +G R RRR G   P+R
Sbjct: 355 EKGGRSGGRRRRGSGRRGRRRSGGRRPKR 269



to top

>LOC_Os09g17740:12009.t01559:unspliced-genomic chlorophyll a-b binding protein 1, chloroplast precursor, putative,|
           expressed
          Length = 1467

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3 / -1

                                       
Query: 30  KEAETGDRDRRREGAMEPRRATRRRSGT 113
           +    G R RR      PRRA RRR GT
Sbjct: 747 RRGRAGRRRRRGRAGRRPRRAARRRCGT 664



to top

>LOC_Os08g14180:12008.t01294:unspliced-genomic flavonol 4-sulfotransferase, putative, expressed|
          Length = 4598

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3 / -2

                                
Query: 45  GDRDRRREGAMEPRRATRRRS 107
           G R RRR  A  PRRA RRR+
Sbjct: 298 GARGRRRRAAWRPRRAPRRRA 236



to top

>LOC_Os03g58590:12003.t05113:unspliced-genomic cactin, putative, expressed|
          Length = 6644

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3 / +3

                                                 
Query: 327  RIVELLDDLCDKMQDYTLQKSESGEKEWVKVANWSSF 437
            R+  +L + C+K Q Y +   +S  KEW+ + N  SF
Sbjct: 2613 RLSFILSNKCNKFQIYIINILDSLLKEWLPITNCLSF 2723



to top

>LOC_Os02g54830:12002.t05061:unspliced-genomic RING-H2 finger protein ATL2C, putative, expressed|
          Length = 1772

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 13/21 (61%), Positives = 13/21 (61%)
 Frame = +3 / -1

                                
Query: 51  RDRRREGAMEPRRATRRRSGT 113
           R R R G   PRR  RRRSGT
Sbjct: 575 RQRSRTGPCHPRRRRRRRSGT 513



to top

>LOC_Os02g38460:12002.t03484:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 2373

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3 / +2

                                              
Query: 12  QTHTTKKEAETGDRDRRREGAMEPRRATRRRSGTV 116
           ++H+T   A  G+R RRR G        RRRS T+
Sbjct: 344 RSHSTAARAPAGERARRRGGPRRRHHLRRRRSLTL 448


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 269,605,347
Number of extensions: 3728543
Number of successful extensions: 20617
Number of sequences better than 10.0: 20
Length of query: 280
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 231
Effective length of database: 52,856,264
Effective search space: 12209796984
Effective search space used: 12209796984
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
to top