ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf166l16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001073515.1| Oryza sativa (japonica cultivar-group) Os12g0552500 (Os12g0552500) mRNA, complete cds Length = 846 Score = 307 bits (155), Expect = 4e-80 Identities = 319/374 (85%), Gaps = 6/374 (1%) Strand = Plus / Plus Query: 239 gcagtaccgcctcgtcgtcgtcacggccaagcccaccgccgcgtccgccgtcggcctcgc 298 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 185 gcagtaccgcctcgtcgtcgtcaacgccaagcccaccgccgcctccgccgtcggcctcgc 244 Query: 299 cggaccaggtgccgcggacgtgctgccgttcgtggaagcggacctgaagcggagctcgct 358 ||| ||||| |||||||| ||||||||||||||||| |||||||||||| |||||| | Sbjct: 245 cggcccaggcgccgcggatgtgctgccgttcgtggaggcggacctgaagaagagctccat 304 Query: 359 gcgcgtcatcgacaaggccaaggagctctgcgcgcaggcgcaggtgagcgatggtgtctt 418 |||||||||||| ||||||| |||||||||| || |||||||| |||| | | || Sbjct: 305 gcgcgtcatcgagaaggccagggagctctgc------gcccaggtgagtgatgctctgtt 358 Query: 419 cgaagtggtggagggggatgcaaggaacgtcctctgtgaggcggtggaaaggcatcacgc 478 |||||| |||| |||||||| ||||| || || |||||| | || || |||||||| || Sbjct: 359 tgaagtgctggaaggggatgccaggaatgttctttgtgagtctgttgagaggcatcaggc 418 Query: 479 agagatgctggttgtgggcaaccatggctatggagcaatcaaaagggctgttcttggaag 538 |||||| ||||||| || | |||||||||||||||||| ||| | |||||||||||||| Sbjct: 419 ggagatgttggttgtcggaagccatggctatggagcaattaaacgagctgttcttggaag 478 Query: 539 tgtgagcgactactgcacccaccacgcgcactgcaccgtgatgattgtgaagaagccaaa 598 ||||| |||||||| | || || |||||||||||||||||||| || || ||||| || Sbjct: 479 cgtgagtgactactgttctcatcatgcgcactgcaccgtgatgatagtaaaaaagccgaa 538 Query: 599 gcacaagcactgag 612 |||||||||||||| Sbjct: 539 gcacaagcactgag 552 Score = 127 bits (64), Expect = 8e-26 Identities = 73/76 (96%) Strand = Plus / Plus Query: 149 gatgacgatggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggac 208 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 86 gatgacgatggtggtaggggtggacgagagcgagcacagctactacgcgctgcagtggac 145 Query: 209 gctcctccacttcttc 224 ||| | |||||||||| Sbjct: 146 gctgcgccacttcttc 161
>dbj|AK066459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066N15, full insert sequence Length = 848 Score = 307 bits (155), Expect = 4e-80 Identities = 319/374 (85%), Gaps = 6/374 (1%) Strand = Plus / Plus Query: 239 gcagtaccgcctcgtcgtcgtcacggccaagcccaccgccgcgtccgccgtcggcctcgc 298 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 187 gcagtaccgcctcgtcgtcgtcaacgccaagcccaccgccgcctccgccgtcggcctcgc 246 Query: 299 cggaccaggtgccgcggacgtgctgccgttcgtggaagcggacctgaagcggagctcgct 358 ||| ||||| |||||||| ||||||||||||||||| |||||||||||| |||||| | Sbjct: 247 cggcccaggcgccgcggatgtgctgccgttcgtggaggcggacctgaagaagagctccat 306 Query: 359 gcgcgtcatcgacaaggccaaggagctctgcgcgcaggcgcaggtgagcgatggtgtctt 418 |||||||||||| ||||||| |||||||||| || |||||||| |||| | | || Sbjct: 307 gcgcgtcatcgagaaggccagggagctctgc------gcccaggtgagtgatgctctgtt 360 Query: 419 cgaagtggtggagggggatgcaaggaacgtcctctgtgaggcggtggaaaggcatcacgc 478 |||||| |||| |||||||| ||||| || || |||||| | || || |||||||| || Sbjct: 361 tgaagtgctggaaggggatgccaggaatgttctttgtgagtctgttgagaggcatcaggc 420 Query: 479 agagatgctggttgtgggcaaccatggctatggagcaatcaaaagggctgttcttggaag 538 |||||| ||||||| || | |||||||||||||||||| ||| | |||||||||||||| Sbjct: 421 ggagatgttggttgtcggaagccatggctatggagcaattaaacgagctgttcttggaag 480 Query: 539 tgtgagcgactactgcacccaccacgcgcactgcaccgtgatgattgtgaagaagccaaa 598 ||||| |||||||| | || || |||||||||||||||||||| || || ||||| || Sbjct: 481 cgtgagtgactactgttctcatcatgcgcactgcaccgtgatgatagtaaaaaagccgaa 540 Query: 599 gcacaagcactgag 612 |||||||||||||| Sbjct: 541 gcacaagcactgag 554 Score = 127 bits (64), Expect = 8e-26 Identities = 73/76 (96%) Strand = Plus / Plus Query: 149 gatgacgatggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggac 208 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 88 gatgacgatggtggtaggggtggacgagagcgagcacagctactacgcgctgcagtggac 147 Query: 209 gctcctccacttcttc 224 ||| | |||||||||| Sbjct: 148 gctgcgccacttcttc 163
>gb|BT018800.1| Zea mays clone EL01N0529C05.d mRNA sequence Length = 1674 Score = 216 bits (109), Expect = 1e-52 Identities = 186/211 (88%), Gaps = 3/211 (1%) Strand = Plus / Plus Query: 142 cgggcaagatgacgatggtggtcggggtggacgagagcgagcacagctactacgcgctgc 201 |||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| Sbjct: 85 cggggaagatgacgatggtggtaggggtcgacgagagcgagcacagcttctacgcgctgc 144 Query: 202 agtggacgctcctccacttcttctccccggggcagc---agcagtaccgcctcgtcgtcg 258 ||||| | || | ||||||||| | ||||| |||| ||||||||||||||||||||| Sbjct: 145 agtgggcactgcagcacttcttcccgccgggccagccgcagcagtaccgcctcgtcgtcg 204 Query: 259 tcacggccaagcccaccgccgcgtccgccgtcggcctcgccggaccaggtgccgcggacg 318 |||| |||||||| |||||||| |||||||||||||||||||| ||||| |||||||| | Sbjct: 205 tcaccgccaagcctaccgccgcctccgccgtcggcctcgccggcccaggcgccgcggatg 264 Query: 319 tgctgccgttcgtggaagcggacctgaagcg 349 ||||||||| |||||| ||||| || ||||| Sbjct: 265 tgctgccgtacgtggaggcggatctcaagcg 295 Score = 111 bits (56), Expect = 5e-21 Identities = 74/80 (92%) Strand = Plus / Plus Query: 522 agggctgttcttggaagtgtgagcgactactgcacccaccacgcgcactgcaccgtgatg 581 |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct: 1318 agggctgttcttggaagtgtgagcgactactgtgcccatcacgcgcactgcaccgtgatg 1377 Query: 582 attgtgaagaagccaaagca 601 || || |||||||| ||||| Sbjct: 1378 atagtaaagaagcccaagca 1397 Score = 46.1 bits (23), Expect = 0.23 Identities = 83/103 (80%) Strand = Plus / Plus Query: 427 tggagggggatgcaaggaacgtcctctgtgaggcggtggaaaggcatcacgcagagatgc 486 |||||||||| || |||||||||||||| ||||| || || ||||| || ||||||| Sbjct: 367 tggagggggacgctaggaacgtcctctgcgaggctgtcgagaggcacggggccgagatgc 426 Query: 487 tggttgtgggcaaccatggctatggagcaatcaaaagggctgt 529 | || || |||| |||||| || ||||| || |||||| |||| Sbjct: 427 tcgtcgtcggcagccatggttacggagccattaaaaggtctgt 469
>gb|BT016471.1| Zea mays clone Contig304 mRNA sequence Length = 887 Score = 200 bits (101), Expect = 7e-48 Identities = 184/211 (87%), Gaps = 3/211 (1%) Strand = Plus / Minus Query: 142 cgggcaagatgacgatggtggtcggggtggacgagagcgagcacagctactacgcgctgc 201 |||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| Sbjct: 738 cggggaagatgacgatggtggtaggggtcgacgagagcgagcacagcttttacgcgctgc 679 Query: 202 agtggacgctcctccacttcttctccccggg---gcagcagcagtaccgcctcgtcgtcg 258 ||||| | || | || |||||| | ||||| || ||||||||||||||||||||||| Sbjct: 678 agtgggcactgcagcatttcttcccgccgggccagccgcagcagtaccgcctcgtcgtcg 619 Query: 259 tcacggccaagcccaccgccgcgtccgccgtcggcctcgccggaccaggtgccgcggacg 318 |||| |||||||| |||||||| |||||||||||||||||||| ||||| |||||||| | Sbjct: 618 tcaccgccaagcctaccgccgcctccgccgtcggcctcgccggcccaggcgccgcggatg 559 Query: 319 tgctgccgttcgtggaagcggacctgaagcg 349 ||||||||| |||||| ||||| || ||||| Sbjct: 558 tgctgccgtacgtggaggcggatctcaagcg 528 Score = 149 bits (75), Expect = 2e-32 Identities = 150/175 (85%) Strand = Plus / Minus Query: 427 tggagggggatgcaaggaacgtcctctgtgaggcggtggaaaggcatcacgcagagatgc 486 |||||||||| || |||||||||||||| ||||| || || ||||| || ||||||| Sbjct: 456 tggagggggacgctaggaacgtcctctgcgaggctgtcgagaggcacggggccgagatgc 397 Query: 487 tggttgtgggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcg 546 | || || |||| |||||| || ||||| || |||||||||||||||||||||||||||| Sbjct: 396 tcgtcgtcggcagccatggttacggagccattaaaagggctgttcttggaagtgtgagcg 337 Query: 547 actactgcacccaccacgcgcactgcaccgtgatgattgtgaagaagccaaagca 601 ||||||| |||| ||||||||||||||||||||||| || |||||||| ||||| Sbjct: 336 actactgtgcccatcacgcgcactgcaccgtgatgatagtaaagaagcccaagca 282
>emb|CT834516.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA014J18, full insert sequence Length = 731 Score = 184 bits (93), Expect = 4e-43 Identities = 144/161 (89%) Strand = Plus / Plus Query: 441 aggaacgtcctctgtgaggcggtggaaaggcatcacgcagagatgctggttgtgggcaac 500 |||||| ||||||||||||| || ||||||||||| ||||| |||||||||||||||| | Sbjct: 374 aggaacatcctctgtgaggcagttgaaaggcatcatgcagatatgctggttgtgggcagc 433 Query: 501 catggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgcacccac 560 ||||||||||| ||| ||||||||||||||||| || |||||||||||||||| ||| Sbjct: 434 catggctatggggcatggaaaagggctgttcttgggagcgtgagcgactactgcagccat 493 Query: 561 cacgcgcactgcaccgtgatgattgtgaagaagccaaagca 601 ||||||||||||||||||||||| ||||||| ||| ||||| Sbjct: 494 cacgcgcactgcaccgtgatgatcgtgaagaggcccaagca 534 Score = 46.1 bits (23), Expect = 0.23 Identities = 56/67 (83%) Strand = Plus / Plus Query: 171 gacgagagcgagcacagctactacgcgctgcagtggacgctcctccacttcttctccccg 230 ||||| ||||| || |||||||||||||| ||||||||||| ||||||||| ||| | Sbjct: 107 gacgatagcgaccatagctactacgcgctcgagtggacgctcaaacacttcttcgccctg 166 Query: 231 gggcagc 237 || |||| Sbjct: 167 ggccagc 173
>emb|CT832556.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI023J04, full insert sequence Length = 843 Score = 184 bits (93), Expect = 4e-43 Identities = 144/161 (89%) Strand = Plus / Plus Query: 441 aggaacgtcctctgtgaggcggtggaaaggcatcacgcagagatgctggttgtgggcaac 500 |||||| ||||||||||||| || ||||||||||| ||||| |||||||||||||||| | Sbjct: 520 aggaacatcctctgtgaggcagttgaaaggcatcatgcagatatgctggttgtgggcagc 579 Query: 501 catggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgcacccac 560 ||||||||||| ||| ||||||||||||||||| || |||||||||||||||| ||| Sbjct: 580 catggctatggggcatggaaaagggctgttcttgggagcgtgagcgactactgcagccat 639 Query: 561 cacgcgcactgcaccgtgatgattgtgaagaagccaaagca 601 ||||||||||||||||||||||| ||||||| ||| ||||| Sbjct: 640 cacgcgcactgcaccgtgatgatcgtgaagaggcccaagca 680 Score = 46.1 bits (23), Expect = 0.23 Identities = 56/67 (83%) Strand = Plus / Plus Query: 171 gacgagagcgagcacagctactacgcgctgcagtggacgctcctccacttcttctccccg 230 ||||| ||||| || |||||||||||||| ||||||||||| ||||||||| ||| | Sbjct: 253 gacgatagcgaccatagctactacgcgctcgagtggacgctcaaacacttcttcgccctg 312 Query: 231 gggcagc 237 || |||| Sbjct: 313 ggccagc 319
>ref|NM_001073514.1| Oryza sativa (japonica cultivar-group) Os12g0552400 (Os12g0552400) mRNA, complete cds Length = 886 Score = 184 bits (93), Expect = 4e-43 Identities = 144/161 (89%) Strand = Plus / Plus Query: 441 aggaacgtcctctgtgaggcggtggaaaggcatcacgcagagatgctggttgtgggcaac 500 |||||| ||||||||||||| || ||||||||||| ||||| |||||||||||||||| | Sbjct: 387 aggaacatcctctgtgaggcagttgaaaggcatcatgcagatatgctggttgtgggcagc 446 Query: 501 catggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgcacccac 560 ||||||||||| ||| ||||||||||||||||| || |||||||||||||||| ||| Sbjct: 447 catggctatggggcatggaaaagggctgttcttgggagcgtgagcgactactgcagccat 506 Query: 561 cacgcgcactgcaccgtgatgattgtgaagaagccaaagca 601 ||||||||||||||||||||||| ||||||| ||| ||||| Sbjct: 507 cacgcgcactgcaccgtgatgatcgtgaagaggcccaagca 547 Score = 46.1 bits (23), Expect = 0.23 Identities = 56/67 (83%) Strand = Plus / Plus Query: 171 gacgagagcgagcacagctactacgcgctgcagtggacgctcctccacttcttctccccg 230 ||||| ||||| || |||||||||||||| ||||||||||| ||||||||| ||| | Sbjct: 120 gacgatagcgaccatagctactacgcgctcgagtggacgctcaaacacttcttcgccctg 179 Query: 231 gggcagc 237 || |||| Sbjct: 180 ggccagc 186
>dbj|AK070150.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047P03, full insert sequence Length = 888 Score = 184 bits (93), Expect = 4e-43 Identities = 144/161 (89%) Strand = Plus / Plus Query: 441 aggaacgtcctctgtgaggcggtggaaaggcatcacgcagagatgctggttgtgggcaac 500 |||||| ||||||||||||| || ||||||||||| ||||| |||||||||||||||| | Sbjct: 389 aggaacatcctctgtgaggcagttgaaaggcatcatgcagatatgctggttgtgggcagc 448 Query: 501 catggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgcacccac 560 ||||||||||| ||| ||||||||||||||||| || |||||||||||||||| ||| Sbjct: 449 catggctatggggcatggaaaagggctgttcttgggagcgtgagcgactactgcagccat 508 Query: 561 cacgcgcactgcaccgtgatgattgtgaagaagccaaagca 601 ||||||||||||||||||||||| ||||||| ||| ||||| Sbjct: 509 cacgcgcactgcaccgtgatgatcgtgaagaggcccaagca 549 Score = 46.1 bits (23), Expect = 0.23 Identities = 56/67 (83%) Strand = Plus / Plus Query: 171 gacgagagcgagcacagctactacgcgctgcagtggacgctcctccacttcttctccccg 230 ||||| ||||| || |||||||||||||| ||||||||||| ||||||||| ||| | Sbjct: 122 gacgatagcgaccatagctactacgcgctcgagtggacgctcaaacacttcttcgccctg 181 Query: 231 gggcagc 237 || |||| Sbjct: 182 ggccagc 188
>gb|AY109561.1| Zea mays CL6161_2 mRNA sequence Length = 1379 Score = 137 bits (69), Expect = 8e-29 Identities = 138/161 (85%) Strand = Plus / Plus Query: 441 aggaacgtcctctgtgaggcggtggaaaggcatcacgcagagatgctggttgtgggcaac 500 |||||||||||||| ||||| || || ||||| || |||||||| || || |||| | Sbjct: 851 aggaacgtcctctgcgaggctgtcgagaggcacggggccgagatgctcgtcgtcggcagc 910 Query: 501 catggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgcacccac 560 ||||| || ||||| || ||||||||||||||||||||||||||||||||||| |||| Sbjct: 911 catggttacggagccattaaaagggctgttcttggaagtgtgagcgactactgtgcccat 970 Query: 561 cacgcgcactgcaccgtgatgattgtgaagaagccaaagca 601 ||||||||||||||||||||||| || |||||||| ||||| Sbjct: 971 cacgcgcactgcaccgtgatgatagtaaagaagcccaagca 1011 Score = 63.9 bits (32), Expect = 1e-06 Identities = 92/113 (81%), Gaps = 3/113 (2%) Strand = Plus / Plus Query: 149 gatgacgatggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggac 208 ||||||||||||||| ||||||||||||||||||| || |||||||||||| | Sbjct: 562 gatgacgatggtggtannnnncgacgagagcgagcacagcttttaggcgctgcagtgggc 621 Query: 209 gctcctccacttcttctccccggg---gcagcagcagtaccgcctcgtcgtcg 258 || | ||||||||| | ||||| || ||||||||||||||||||||||| Sbjct: 622 actgcagcacttcttcccgccgggccagccgcagcagtaccgcctcgtcgtcg 674
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 127 bits (64), Expect = 8e-26 Identities = 73/76 (96%) Strand = Plus / Minus Query: 149 gatgacgatggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggac 208 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22465345 gatgacgatggtggtaggggtggacgagagcgagcacagctactacgcgctgcagtggac 22465286 Query: 209 gctcctccacttcttc 224 ||| | |||||||||| Sbjct: 22465285 gctgcgccacttcttc 22465270 Score = 107 bits (54), Expect = 7e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 239 gcagtaccgcctcgtcgtcgtcacggccaagcccaccgccgcgtccgccgtcggcctcgc 298 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 22465246 gcagtaccgcctcgtcgtcgtcaacgccaagcccaccgccgcctccgccgtcggcctcgc 22465187 Query: 299 cggaccaggt 308 ||| |||||| Sbjct: 22465186 cggcccaggt 22465177 Score = 103 bits (52), Expect = 1e-18 Identities = 73/80 (91%) Strand = Plus / Minus Query: 522 agggctgttcttggaagtgtgagcgactactgcacccaccacgcgcactgcaccgtgatg 581 |||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 22461922 agggctgttcttgggagcgtgagcgactactgcagccatcacgcgcactgcaccgtgatg 22461863 Query: 582 attgtgaagaagccaaagca 601 || ||||||| ||| ||||| Sbjct: 22461862 atcgtgaagaggcccaagca 22461843 Score = 103 bits (52), Expect = 1e-18 Identities = 79/88 (89%) Strand = Plus / Minus Query: 309 gccgcggacgtgctgccgttcgtggaagcggacctgaagcggagctcgctgcgcgtcatc 368 |||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||| Sbjct: 22465086 gccgcggatgtgctgccgttcgtggaggcggacctgaagaagagctccatgcgcgtcatc 22465027 Query: 369 gacaaggccaaggagctctgcgcgcagg 396 || ||||||| |||||||||||| |||| Sbjct: 22465026 gagaaggccagggagctctgcgcccagg 22464999 Score = 93.7 bits (47), Expect = 1e-15 Identities = 65/71 (91%) Strand = Plus / Minus Query: 441 aggaacgtcctctgtgaggcggtggaaaggcatcacgcagagatgctggttgtgggcaac 500 |||||| ||||||||||||| || ||||||||||| ||||| |||||||||||||||| | Sbjct: 22462235 aggaacatcctctgtgaggcagttgaaaggcatcatgcagatatgctggttgtgggcagc 22462176 Query: 501 catggctatgg 511 ||||||||||| Sbjct: 22462175 catggctatgg 22462165 Score = 87.7 bits (44), Expect = 7e-14 Identities = 77/88 (87%) Strand = Plus / Minus Query: 525 gctgttcttggaagtgtgagcgactactgcacccaccacgcgcactgcaccgtgatgatt 584 |||||||||||||| ||||| |||||||| | || || |||||||||||||||||||| Sbjct: 22463454 gctgttcttggaagcgtgagtgactactgttctcatcatgcgcactgcaccgtgatgata 22463395 Query: 585 gtgaagaagccaaagcacaagcactgag 612 || || ||||| |||||||||||||||| Sbjct: 22463394 gtaaaaaagccgaagcacaagcactgag 22463367 Score = 71.9 bits (36), Expect = 4e-09 Identities = 99/120 (82%) Strand = Plus / Minus Query: 398 gcaggtgagcgatggtgtcttcgaagtggtggagggggatgcaaggaacgtcctctgtga 457 ||||||||| |||| | | || |||||| |||| |||||||| ||||| || || ||||| Sbjct: 22464377 gcaggtgagtgatgctctgtttgaagtgctggaaggggatgccaggaatgttctttgtga 22464318 Query: 458 ggcggtggaaaggcatcacgcagagatgctggttgtgggcaaccatggctatggagcaat 517 | | || || |||||||| || |||||| ||||||| || | |||||||||||||||||| Sbjct: 22464317 gtctgttgagaggcatcaggcggagatgttggttgtcggaagccatggctatggagcaat 22464258 Score = 46.1 bits (23), Expect = 0.23 Identities = 56/67 (83%) Strand = Plus / Minus Query: 171 gacgagagcgagcacagctactacgcgctgcagtggacgctcctccacttcttctccccg 230 ||||| ||||| || |||||||||||||| ||||||||||| ||||||||| ||| | Sbjct: 22462700 gacgatagcgaccatagctactacgcgctcgagtggacgctcaaacacttcttcgccctg 22462641 Query: 231 gggcagc 237 || |||| Sbjct: 22462640 ggccagc 22462634
>emb|AL732640.4|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa0022K16 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183414 Score = 127 bits (64), Expect = 8e-26 Identities = 73/76 (96%) Strand = Plus / Plus Query: 149 gatgacgatggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggac 208 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42189 gatgacgatggtggtaggggtggacgagagcgagcacagctactacgcgctgcagtggac 42248 Query: 209 gctcctccacttcttc 224 ||| | |||||||||| Sbjct: 42249 gctgcgccacttcttc 42264 Score = 107 bits (54), Expect = 7e-20 Identities = 66/70 (94%) Strand = Plus / Plus Query: 239 gcagtaccgcctcgtcgtcgtcacggccaagcccaccgccgcgtccgccgtcggcctcgc 298 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct: 42288 gcagtaccgcctcgtcgtcgtcaacgccaagcccaccgccgcctccgccgtcggcctcgc 42347 Query: 299 cggaccaggt 308 ||| |||||| Sbjct: 42348 cggcccaggt 42357 Score = 103 bits (52), Expect = 1e-18 Identities = 79/88 (89%) Strand = Plus / Plus Query: 309 gccgcggacgtgctgccgttcgtggaagcggacctgaagcggagctcgctgcgcgtcatc 368 |||||||| ||||||||||||||||| |||||||||||| |||||| ||||||||||| Sbjct: 42448 gccgcggatgtgctgccgttcgtggaggcggacctgaagaagagctccatgcgcgtcatc 42507 Query: 369 gacaaggccaaggagctctgcgcgcagg 396 || ||||||| |||||||||||| |||| Sbjct: 42508 gagaaggccagggagctctgcgcccagg 42535 Score = 103 bits (52), Expect = 1e-18 Identities = 73/80 (91%) Strand = Plus / Plus Query: 522 agggctgttcttggaagtgtgagcgactactgcacccaccacgcgcactgcaccgtgatg 581 |||||||||||||| || |||||||||||||||| ||| ||||||||||||||||||||| Sbjct: 45612 agggctgttcttgggagcgtgagcgactactgcagccatcacgcgcactgcaccgtgatg 45671 Query: 582 attgtgaagaagccaaagca 601 || ||||||| ||| ||||| Sbjct: 45672 atcgtgaagaggcccaagca 45691 Score = 93.7 bits (47), Expect = 1e-15 Identities = 65/71 (91%) Strand = Plus / Plus Query: 441 aggaacgtcctctgtgaggcggtggaaaggcatcacgcagagatgctggttgtgggcaac 500 |||||| ||||||||||||| || ||||||||||| ||||| |||||||||||||||| | Sbjct: 45299 aggaacatcctctgtgaggcagttgaaaggcatcatgcagatatgctggttgtgggcagc 45358 Query: 501 catggctatgg 511 ||||||||||| Sbjct: 45359 catggctatgg 45369 Score = 87.7 bits (44), Expect = 7e-14 Identities = 77/88 (87%) Strand = Plus / Plus Query: 525 gctgttcttggaagtgtgagcgactactgcacccaccacgcgcactgcaccgtgatgatt 584 |||||||||||||| ||||| |||||||| | || || |||||||||||||||||||| Sbjct: 44080 gctgttcttggaagcgtgagtgactactgttctcatcatgcgcactgcaccgtgatgata 44139 Query: 585 gtgaagaagccaaagcacaagcactgag 612 || || ||||| |||||||||||||||| Sbjct: 44140 gtaaaaaagccgaagcacaagcactgag 44167 Score = 71.9 bits (36), Expect = 4e-09 Identities = 99/120 (82%) Strand = Plus / Plus Query: 398 gcaggtgagcgatggtgtcttcgaagtggtggagggggatgcaaggaacgtcctctgtga 457 ||||||||| |||| | | || |||||| |||| |||||||| ||||| || || ||||| Sbjct: 43157 gcaggtgagtgatgctctgtttgaagtgctggaaggggatgccaggaatgttctttgtga 43216 Query: 458 ggcggtggaaaggcatcacgcagagatgctggttgtgggcaaccatggctatggagcaat 517 | | || || |||||||| || |||||| ||||||| || | |||||||||||||||||| Sbjct: 43217 gtctgttgagaggcatcaggcggagatgttggttgtcggaagccatggctatggagcaat 43276 Score = 46.1 bits (23), Expect = 0.23 Identities = 56/67 (83%) Strand = Plus / Plus Query: 171 gacgagagcgagcacagctactacgcgctgcagtggacgctcctccacttcttctccccg 230 ||||| ||||| || |||||||||||||| ||||||||||| ||||||||| ||| | Sbjct: 44834 gacgatagcgaccatagctactacgcgctcgagtggacgctcaaacacttcttcgccctg 44893 Query: 231 gggcagc 237 || |||| Sbjct: 44894 ggccagc 44900
>emb|CT831770.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025E13, full insert sequence Length = 812 Score = 81.8 bits (41), Expect = 4e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 157 tggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggacg 209 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 123 tggtggtcggggtggacgacagcgagcacagcaactacgcgctggagtggacg 175 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 495 ggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgc 554 |||| ||||||||| || |||||||| ||||| | || || || || |||||||||||| Sbjct: 467 ggcagccatggctacggcgcaatcaagagggccttcctggggagcgtcagcgactactgc 526 Query: 555 acccaccacgcgcactgcaccgtgatgat 583 ||||||||||||||||| |||| ||||| Sbjct: 527 gcccaccacgcgcactgctccgtcatgat 555
>ref|NM_001067142.1| Oryza sativa (japonica cultivar-group) Os07g0673400 (Os07g0673400) mRNA, complete cds Length = 846 Score = 81.8 bits (41), Expect = 4e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 157 tggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggacg 209 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 220 tggtggtcggggtggacgacagcgagcacagcaactacgcgctggagtggacg 272 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 495 ggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgc 554 |||| ||||||||| || |||||||| ||||| | || || || || |||||||||||| Sbjct: 564 ggcagccatggctacggcgcaatcaagagggccttcctggggagcgtcagcgactactgc 623 Query: 555 acccaccacgcgcactgcaccgtgatgat 583 ||||||||||||||||| |||| ||||| Sbjct: 624 gcccaccacgcgcactgctccgtcatgat 652
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 81.8 bits (41), Expect = 4e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 157 tggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggacg 209 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 28415168 tggtggtcggggtggacgacagcgagcacagcaactacgcgctggagtggacg 28415220 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 495 ggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgc 554 |||| ||||||||| || |||||||| ||||| | || || || || |||||||||||| Sbjct: 28415694 ggcagccatggctacggcgcaatcaagagggccttcctggggagcgtcagcgactactgc 28415753 Query: 555 acccaccacgcgcactgcaccgtgatgat 583 ||||||||||||||||| |||| ||||| Sbjct: 28415754 gcccaccacgcgcactgctccgtcatgat 28415782
>gb|AY224503.1| Oryza sativa (japonica cultivar-group) isolate 31158 unknown mRNA Length = 523 Score = 81.8 bits (41), Expect = 4e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 157 tggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggacg 209 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 38 tggtggtcggggtggacgacagcgagcacagcaactacgcgctggagtggacg 90 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 495 ggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgc 554 |||| ||||||||| || |||||||| ||||| | || || || || |||||||||||| Sbjct: 368 ggcagccatggctacggcgcaatcaagagggccttcctggggagcgtcagcgactactgc 427 Query: 555 acccaccacgcgcactgcaccgtgatgat 583 ||||||||||||||||| |||| ||||| Sbjct: 428 gcccaccacgcgcactgctccgtcatgat 456
>gb|AF491815.1| Oryza sativa (indica cultivar-group) putative universal stress protein USP1 (Usp1) mRNA, complete cds Length = 630 Score = 81.8 bits (41), Expect = 4e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 157 tggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggacg 209 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 128 tggtggtcggggtggacgacagcgagcacagcaactacgcgctggagtggacg 180 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 495 ggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgc 554 |||| ||||||||| || |||||||| ||||| | || || || || |||||||||||| Sbjct: 472 ggcagccatggctacggcgcaatcaagagggccttcctggggagcgtcagcgactactgc 531 Query: 555 acccaccacgcgcactgcaccgtgatgat 583 ||||||||||||||||| |||| ||||| Sbjct: 532 gcccaccacgcgcactgctccgtcatgat 560
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 81.8 bits (41), Expect = 4e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 157 tggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggacg 209 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 140731 tggtggtcggggtggacgacagcgagcacagcaactacgcgctggagtggacg 140783 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 495 ggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgc 554 |||| ||||||||| || |||||||| ||||| | || || || || |||||||||||| Sbjct: 141257 ggcagccatggctacggcgcaatcaagagggccttcctggggagcgtcagcgactactgc 141316 Query: 555 acccaccacgcgcactgcaccgtgatgat 583 ||||||||||||||||| |||| ||||| Sbjct: 141317 gcccaccacgcgcactgctccgtcatgat 141345
>dbj|AK073356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028K22, full insert sequence Length = 937 Score = 81.8 bits (41), Expect = 4e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 157 tggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggacg 209 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 129 tggtggtcggggtggacgacagcgagcacagcaactacgcgctggagtggacg 181 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 495 ggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgc 554 |||| ||||||||| || |||||||| ||||| | || || || || |||||||||||| Sbjct: 655 ggcagccatggctacggcgcaatcaagagggccttcctggggagcgtcagcgactactgc 714 Query: 555 acccaccacgcgcactgcaccgtgatgat 583 ||||||||||||||||| |||| ||||| Sbjct: 715 gcccaccacgcgcactgctccgtcatgat 743
>dbj|AK064061.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-F10, full insert sequence Length = 846 Score = 81.8 bits (41), Expect = 4e-12 Identities = 50/53 (94%) Strand = Plus / Plus Query: 157 tggtggtcggggtggacgagagcgagcacagctactacgcgctgcagtggacg 209 ||||||||||||||||||| |||||||||||| ||||||||||| |||||||| Sbjct: 220 tggtggtcggggtggacgacagcgagcacagcaactacgcgctggagtggacg 272 Score = 65.9 bits (33), Expect = 3e-07 Identities = 75/89 (84%) Strand = Plus / Plus Query: 495 ggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgactactgc 554 |||| ||||||||| || |||||||| ||||| | || || || || |||||||||||| Sbjct: 564 ggcagccatggctacggcgcaatcaagagggccttcctggggagcgtcagcgactactgc 623 Query: 555 acccaccacgcgcactgcaccgtgatgat 583 ||||||||||||||||| |||| ||||| Sbjct: 624 gcccaccacgcgcactgctccgtcatgat 652
>gb|AY589695.1| Mirabilis jalapa clone FS-25 putative universal stress protein mRNA, partial cds Length = 534 Score = 71.9 bits (36), Expect = 4e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 508 atggagcaatcaaaagggctgttcttggaagtgtgagcgactactgcacccaccacgcgc 567 ||||||||||||| ||||||||||| || ||||||||||||||||| | || || || | Sbjct: 434 atggagcaatcaagagggctgttctaggcagtgtgagcgactactgtgcacatcatgctc 493 Query: 568 actgcaccgtgatgattgtgaagaagcc 595 ||||| | || || |||||||||||||| Sbjct: 494 actgctctgtaataattgtgaagaagcc 521
>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete sequence; splicing factor SF2-like protein (SF2) and universal stress protein (USP1) genes and Hv receptor-kinase-like pseudogene, complete cds; and retrotransposons Sandra6 and Sandra7, complete sequence Length = 82293 Score = 69.9 bits (35), Expect = 2e-08 Identities = 50/55 (90%) Strand = Plus / Minus Query: 529 ttcttggaagtgtgagcgactactgcacccaccacgcgcactgcaccgtgatgat 583 ||||||| || ||||||||||||||| ||||||||||||||||| |||| ||||| Sbjct: 43184 ttcttgggagcgtgagcgactactgcgcccaccacgcgcactgctccgtcatgat 43130
>emb|CT835238.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN011M23, full insert sequence Length = 727 Score = 54.0 bits (27), Expect = 0.001 Identities = 36/39 (92%) Strand = Plus / Minus Query: 162 gtcggggtggacgagagcgagcacagctactacgcgctg 200 |||||||||||| | ||||||||||||||| |||||||| Sbjct: 354 gtcggggtggactacagcgagcacagctaccacgcgctg 316
>ref|NM_130339.2| Arabidopsis thaliana unknown protein (AT2G47710) mRNA, complete cds Length = 809 Score = 54.0 bits (27), Expect = 0.001 Identities = 87/107 (81%) Strand = Plus / Plus Query: 489 gttgtgggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgac 548 |||||||| | |||||| |||||||| ||||| ||||| ||||| || ||| ||| ||| Sbjct: 476 gttgtgggaagccatggatatggagctatcaagagggcggttctcgggagtacgagtgac 535 Query: 549 tactgcacccaccacgcgcactgcaccgtgatgattgtgaagaagcc 595 |||||| | || || || || ||| | |||||||| ||||||||||| Sbjct: 536 tactgcgctcatcatgctcattgctcggtgatgatcgtgaagaagcc 582
>gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete sequence Length = 130355 Score = 54.0 bits (27), Expect = 0.001 Identities = 63/75 (84%) Strand = Plus / Plus Query: 537 agtgtgagcgactactgcacccaccacgcgcactgcaccgtgatgattgtgaagaagcca 596 |||||||| |||||||| | || || || || ||||| ||||||||||||||||||||| Sbjct: 90004 agtgtgagtgactactgtgctcatcatgctcattgcactgtgatgattgtgaagaagcca 90063 Query: 597 aagcacaagcactga 611 || |||||||||| Sbjct: 90064 aaaaccaagcactga 90078 Score = 54.0 bits (27), Expect = 0.001 Identities = 63/75 (84%) Strand = Plus / Plus Query: 537 agtgtgagcgactactgcacccaccacgcgcactgcaccgtgatgattgtgaagaagcca 596 |||||||| |||||||| | || || || || ||||| ||||||||||||||||||||| Sbjct: 98672 agtgtgagtgactactgtgctcatcatgctcattgcactgtgatgattgtgaagaagcca 98731 Query: 597 aagcacaagcactga 611 || |||||||||| Sbjct: 98732 aaaaccaagcactga 98746
>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06, complete sequence Length = 132243 Score = 54.0 bits (27), Expect = 0.001 Identities = 36/39 (92%) Strand = Plus / Minus Query: 162 gtcggggtggacgagagcgagcacagctactacgcgctg 200 |||||||||||| | ||||||||||||||| |||||||| Sbjct: 33615 gtcggggtggactacagcgagcacagctaccacgcgctg 33577
>gb|AY081535.1| Arabidopsis thaliana unknown protein (At2g47710) mRNA, complete cds Length = 529 Score = 54.0 bits (27), Expect = 0.001 Identities = 87/107 (81%) Strand = Plus / Plus Query: 489 gttgtgggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgac 548 |||||||| | |||||| |||||||| ||||| ||||| ||||| || ||| ||| ||| Sbjct: 367 gttgtgggaagccatggatatggagctatcaagagggcggttctcgggagtacgagtgac 426 Query: 549 tactgcacccaccacgcgcactgcaccgtgatgattgtgaagaagcc 595 |||||| | || || || || ||| | |||||||| ||||||||||| Sbjct: 427 tactgcgctcatcatgctcattgctcggtgatgatcgtgaagaagcc 473
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 54.0 bits (27), Expect = 0.001 Identities = 36/39 (92%) Strand = Plus / Minus Query: 162 gtcggggtggacgagagcgagcacagctactacgcgctg 200 |||||||||||| | ||||||||||||||| |||||||| Sbjct: 12792162 gtcggggtggactacagcgagcacagctaccacgcgctg 12792124 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 91 aggcagccatggcgggggaaa 111 ||||||||||||||||||||| Sbjct: 25498565 aggcagccatggcgggggaaa 25498545
>gb|AY054620.1| Arabidopsis thaliana Unknown protein (At2g47710; F17A22.10) mRNA, complete cds Length = 741 Score = 54.0 bits (27), Expect = 0.001 Identities = 87/107 (81%) Strand = Plus / Plus Query: 489 gttgtgggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgac 548 |||||||| | |||||| |||||||| ||||| ||||| ||||| || ||| ||| ||| Sbjct: 476 gttgtgggaagccatggatatggagctatcaagagggcggttctcgggagtacgagtgac 535 Query: 549 tactgcacccaccacgcgcactgcaccgtgatgattgtgaagaagcc 595 |||||| | || || || || ||| | |||||||| ||||||||||| Sbjct: 536 tactgcgctcatcatgctcattgctcggtgatgatcgtgaagaagcc 582
>gb|AY429440.1| Gossypium barbadense fiber protein Fb19 mRNA, partial cds Length = 823 Score = 50.1 bits (25), Expect = 0.015 Identities = 40/45 (88%) Strand = Plus / Plus Query: 500 ccatggctatggagcaatcaaaagggctgttcttggaagtgtgag 544 |||||| |||||||| || || |||||||||||||| |||||||| Sbjct: 347 ccatggttatggagctataaagagggctgttcttggcagtgtgag 391
>gb|AY086842.1| Arabidopsis thaliana clone 2847 mRNA, complete sequence Length = 787 Score = 50.1 bits (25), Expect = 0.015 Identities = 86/107 (80%) Strand = Plus / Plus Query: 489 gttgtgggcaaccatggctatggagcaatcaaaagggctgttcttggaagtgtgagcgac 548 |||||||| | |||||| |||||||| |||| ||||| ||||| || ||| ||| ||| Sbjct: 477 gttgtgggaagccatggatatggagctatcamgagggcggttctcgggagtacgagtgac 536 Query: 549 tactgcacccaccacgcgcactgcaccgtgatgattgtgaagaagcc 595 |||||| | || || || || ||| | |||||||| ||||||||||| Sbjct: 537 tactgcgctcatcatgctcattgctcggtgatgatcgtgaagaagcc 583
>gb|AC189331.1| Brassica rapa subsp. pekinensis clone KBrB037O12, complete sequence Length = 109500 Score = 46.1 bits (23), Expect = 0.23 Identities = 35/39 (89%) Strand = Plus / Plus Query: 534 ggaagtgtgagcgactactgcacccaccacgcgcactgc 572 |||||||| ||| ||||||||||| ||||||| |||||| Sbjct: 100000 ggaagtgtaagcaactactgcaccaaccacgctcactgc 100038
>gb|AY108164.1| Zea mays PCO106673 mRNA sequence Length = 613 Score = 46.1 bits (23), Expect = 0.23 Identities = 47/55 (85%) Strand = Plus / Plus Query: 543 agcgactactgcacccaccacgcgcactgcaccgtgatgattgtgaagaagccaa 597 |||||||||||| | |||||||||| |||| |||| ||||| || ||| |||||| Sbjct: 160 agcgactactgcgcacaccacgcgccctgctccgtcatgatagtcaagcagccaa 214
>gb|CP000325.1| Mycobacterium ulcerans Agy99, complete genome Length = 5631606 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 cgggggaaacgggggcgacggcggc 127 ||||| ||||||||||||||||||| Sbjct: 1210282 cggggcaaacgggggcgacggcggc 1210258
>emb|CT828639.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI032P06, full insert sequence Length = 527 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 367 tcgacaaggccaaggagctctgcgcgcag 395 |||||||||||||| || ||||||||||| Sbjct: 274 tcgacaaggccaagcagatctgcgcgcag 302
>emb|CT832953.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN057J15, full insert sequence Length = 1095 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 103 cgggggaaacgggggcgacggcggc 127 ||||||||||||| ||||||||||| Sbjct: 132 cgggggaaacgggagcgacggcggc 108
>emb|CT832421.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI027N03, full insert sequence Length = 823 Score = 42.1 bits (21), Expect = 3.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 167 ggtggacgagagcgagcacagctactacgcgctgcagtggacgct 211 |||||||||||||||| |||| || |||||||| ||||| |||| Sbjct: 206 ggtggacgagagcgagttcagccaccacgcgctggagtgggcgct 250 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 367 tcgacaaggccaaggagctctgcgcgcag 395 |||||||||||||| || ||||||||||| Sbjct: 427 tcgacaaggccaagcagatctgcgcgcag 455
>emb|CT832420.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI024B11, full insert sequence Length = 1002 Score = 42.1 bits (21), Expect = 3.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 167 ggtggacgagagcgagcacagctactacgcgctgcagtggacgct 211 |||||||||||||||| |||| || |||||||| ||||| |||| Sbjct: 247 ggtggacgagagcgagttcagccaccacgcgctggagtgggcgct 291 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 367 tcgacaaggccaaggagctctgcgcgcag 395 |||||||||||||| || ||||||||||| Sbjct: 468 tcgacaaggccaagcagatctgcgcgcag 496
>emb|CT832419.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI021F22, full insert sequence Length = 832 Score = 42.1 bits (21), Expect = 3.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 167 ggtggacgagagcgagcacagctactacgcgctgcagtggacgct 211 |||||||||||||||| |||| || |||||||| ||||| |||| Sbjct: 215 ggtggacgagagcgagttcagccaccacgcgctggagtgggcgct 259 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 367 tcgacaaggccaaggagctctgcgcgcag 395 |||||||||||||| || ||||||||||| Sbjct: 436 tcgacaaggccaagcagatctgcgcgcag 464
>emb|CT832418.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI009F12, full insert sequence Length = 789 Score = 42.1 bits (21), Expect = 3.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 167 ggtggacgagagcgagcacagctactacgcgctgcagtggacgct 211 |||||||||||||||| |||| || |||||||| ||||| |||| Sbjct: 172 ggtggacgagagcgagttcagccaccacgcgctggagtgggcgct 216 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 367 tcgacaaggccaaggagctctgcgcgcag 395 |||||||||||||| || ||||||||||| Sbjct: 393 tcgacaaggccaagcagatctgcgcgcag 421
>emb|CT832417.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI005M09, full insert sequence Length = 744 Score = 42.1 bits (21), Expect = 3.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 167 ggtggacgagagcgagcacagctactacgcgctgcagtggacgct 211 |||||||||||||||| |||| || |||||||| ||||| |||| Sbjct: 127 ggtggacgagagcgagttcagccaccacgcgctggagtgggcgct 171 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 367 tcgacaaggccaaggagctctgcgcgcag 395 |||||||||||||| || ||||||||||| Sbjct: 348 tcgacaaggccaagcagatctgcgcgcag 376
>ref|NM_001049705.1| Oryza sativa (japonica cultivar-group) Os01g0511100 (Os01g0511100) mRNA, complete cds Length = 1030 Score = 42.1 bits (21), Expect = 3.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 167 ggtggacgagagcgagcacagctactacgcgctgcagtggacgct 211 |||||||||||||||| |||| || |||||||| ||||| |||| Sbjct: 293 ggtggacgagagcgagttcagccaccacgcgctggagtgggcgct 337 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 367 tcgacaaggccaaggagctctgcgcgcag 395 |||||||||||||| || ||||||||||| Sbjct: 514 tcgacaaggccaagcagatctgcgcgcag 542
>dbj|AK228228.1| Arabidopsis thaliana mRNA for putative ER6 protein, complete cds, clone: RAFL14-67-K13 Length = 828 Score = 42.1 bits (21), Expect = 3.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 529 ttcttggaagtgtgagcgactactgcacccaccacgc 565 |||| |||||||| ||| ||||||||||| ||||||| Sbjct: 502 ttctgggaagtgtaagcaactactgcaccaaccacgc 538
>emb|CT033817.10| Zebrafish DNA sequence from clone CH211-216D10 in linkage group 22, complete sequence Length = 211571 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 651 ggtatttgtgcatgtttgtga 671 ||||||||||||||||||||| Sbjct: 149035 ggtatttgtgcatgtttgtga 149015
>gb|AC185332.5| Nasonia vitripennis BAC NV_Bb-46A10 (Clemson University Genomics Nasonia vitripennis BAC Library) complete sequence Length = 119372 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 577 tgatgattgtgaagaagccaa 597 ||||||||||||||||||||| Sbjct: 5598 tgatgattgtgaagaagccaa 5578
>gb|DQ532441.1| Pseudomonas syringae pv. syringae strain UMAF0158 mangotoxin production gene cluster and rrn operon, partial sequence Length = 11103 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 354 tcgctgcgcgtcatcgacaaggcca 378 ||||||||| ||||||||||||||| Sbjct: 586 tcgctgcgcatcatcgacaaggcca 610
>emb|BX663516.23| Zebrafish DNA sequence from clone DKEY-16F21 in linkage group 10, complete sequence Length = 183367 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 780 atcagaacactgttatttgtgattg 804 ||||||||| ||||||||||||||| Sbjct: 87863 atcagaacaatgttatttgtgattg 87887
>ref|NM_100846.3| Arabidopsis thaliana unknown protein (AT1G09740) mRNA, complete cds Length = 818 Score = 42.1 bits (21), Expect = 3.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 529 ttcttggaagtgtgagcgactactgcacccaccacgc 565 |||| |||||||| ||| ||||||||||| ||||||| Sbjct: 502 ttctgggaagtgtaagcaactactgcaccaaccacgc 538
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 353 ctcgctgcgcgtcatcgacaaggcc 377 |||||||||| |||||||||||||| Sbjct: 3360076 ctcgctgcgcatcatcgacaaggcc 3360100
>gb|AC121511.12| Mus musculus chromosome 18, clone RP24-389K16, complete sequence Length = 151000 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 829 tgtatgtatatgtaaatttaa 849 ||||||||||||||||||||| Sbjct: 94434 tgtatgtatatgtaaatttaa 94454
>gb|AC133859.4| Oryza sativa chromosome 3 BAC OSJNBa0075A22 genomic sequence, complete sequence Length = 152828 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 aggcagccatggcgggggaaa 111 ||||||||||||||||||||| Sbjct: 36104 aggcagccatggcgggggaaa 36124
>emb|CT025649.7| Mouse DNA sequence from clone RP24-345B5 on chromosome 14, complete sequence Length = 175794 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 218 cttcttctccccggggcagca 238 ||||||||||||||||||||| Sbjct: 166964 cttcttctccccggggcagca 166984
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 367 tcgacaaggccaaggagctctgcgcgcag 395 |||||||||||||| || ||||||||||| Sbjct: 17989229 tcgacaaggccaagcagatctgcgcgcag 17989201 Score = 42.1 bits (21), Expect = 3.6 Identities = 39/45 (86%) Strand = Plus / Minus Query: 167 ggtggacgagagcgagcacagctactacgcgctgcagtggacgct 211 |||||||||||||||| |||| || |||||||| ||||| |||| Sbjct: 17989567 ggtggacgagagcgagttcagccaccacgcgctggagtgggcgct 17989523
>dbj|AP003213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0054L14 Length = 150022 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 367 tcgacaaggccaaggagctctgcgcgcag 395 |||||||||||||| || ||||||||||| Sbjct: 16470 tcgacaaggccaagcagatctgcgcgcag 16442 Score = 42.1 bits (21), Expect = 3.6 Identities = 39/45 (86%) Strand = Plus / Minus Query: 167 ggtggacgagagcgagcacagctactacgcgctgcagtggacgct 211 |||||||||||||||| |||| || |||||||| ||||| |||| Sbjct: 16808 ggtggacgagagcgagttcagccaccacgcgctggagtgggcgct 16764
>dbj|AP003077.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0520B06 Length = 142667 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 367 tcgacaaggccaaggagctctgcgcgcag 395 |||||||||||||| || ||||||||||| Sbjct: 109064 tcgacaaggccaagcagatctgcgcgcag 109036 Score = 42.1 bits (21), Expect = 3.6 Identities = 39/45 (86%) Strand = Plus / Minus Query: 167 ggtggacgagagcgagcacagctactacgcgctgcagtggacgct 211 |||||||||||||||| |||| || |||||||| ||||| |||| Sbjct: 109402 ggtggacgagagcgagttcagccaccacgcgctggagtgggcgct 109358
>gb|BT005843.1| Arabidopsis thaliana At1g09740 gene, complete cds Length = 516 Score = 42.1 bits (21), Expect = 3.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 529 ttcttggaagtgtgagcgactactgcacccaccacgc 565 |||| |||||||| ||| ||||||||||| ||||||| Sbjct: 431 ttctgggaagtgtaagcaactactgcaccaaccacgc 467
>gb|AC011995.8| Homo sapiens BAC clone RP11-163G21 from 2, complete sequence Length = 151605 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 gaagtggtggagggggatgca 440 ||||||||||||||||||||| Sbjct: 18687 gaagtggtggagggggatgca 18707
>gb|AC025812.11|AC025812 Homo sapiens chromosome 3 clone RP11-182G24, complete sequence Length = 149006 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 906 gtttgtaaattcatgcctctt 926 ||||||||||||||||||||| Sbjct: 120947 gtttgtaaattcatgcctctt 120927
>gb|AC023090.12| Homo sapiens chromosome 18, clone RP11-800A18, complete sequence Length = 180016 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 tggcgggggaaacgggggcga 120 ||||||||||||||||||||| Sbjct: 20178 tggcgggggaaacgggggcga 20198
>dbj|AK070914.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069J05, full insert sequence Length = 1033 Score = 42.1 bits (21), Expect = 3.6 Identities = 39/45 (86%) Strand = Plus / Plus Query: 167 ggtggacgagagcgagcacagctactacgcgctgcagtggacgct 211 |||||||||||||||| |||| || |||||||| ||||| |||| Sbjct: 294 ggtggacgagagcgagttcagccaccacgcgctggagtgggcgct 338 Score = 42.1 bits (21), Expect = 3.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 367 tcgacaaggccaaggagctctgcgcgcag 395 |||||||||||||| || ||||||||||| Sbjct: 515 tcgacaaggccaagcagatctgcgcgcag 543
>gb|AC107689.7| Mus musculus chromosome 3, clone RP24-283F19, complete sequence Length = 168704 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 369 gacaaggccaaggagctctgc 389 ||||||||||||||||||||| Sbjct: 50957 gacaaggccaaggagctctgc 50977
>gb|AC133519.3| Mus musculus BAC clone RP23-178N8 from chromosome 5, complete sequence Length = 219269 Score = 42.1 bits (21), Expect = 3.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 830 gtatgtatatgtaaatttaatcaag 854 ||||||||||||||||||| ||||| Sbjct: 191159 gtatgtatatgtaaatttagtcaag 191135
>gb|AF152365.1|AF152365 Homo sapiens constitutive fragile region FRA3B sequence Length = 246546 Score = 42.1 bits (21), Expect = 3.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 906 gtttgtaaattcatgcctctt 926 ||||||||||||||||||||| Sbjct: 155029 gtttgtaaattcatgcctctt 155009
>gb|AC000132.1|F21M12 Sequence of BAC F21M12 from Arabidopsis thaliana chromosome 1, complete sequence Length = 146505 Score = 42.1 bits (21), Expect = 3.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 529 ttcttggaagtgtgagcgactactgcacccaccacgc 565 |||| |||||||| ||| ||||||||||| ||||||| Sbjct: 42635 ttctgggaagtgtaagcaactactgcaccaaccacgc 42671 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 152,522,038 Number of extensions: 8295127 Number of successful extensions: 231770 Number of sequences better than 10.0: 63 Number of HSP's gapped: 231765 Number of HSP's successfully gapped: 109 Length of query: 965 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 942 Effective length of database: 18,503,978,556 Effective search space: 17430747799752 Effective search space used: 17430747799752 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
