No.
Definition
Score (bits)
E Value
1 ref|NM_001073721.1| Oryza sativa (japonica cultivar-group) Os12g...
214
6e-52
2 dbj|AK100450.1| Oryza sativa (japonica cultivar-group) cDNA clon...
214
6e-52
3 gb|AY111505.1| Zea mays CL34739_1 mRNA sequence
103
2e-18
4 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
96
4e-16
5 emb|AL713904.3|CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306...
96
4e-16
6 emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa...
96
4e-16
7 ref|NM_001048682.1| Oryza sativa (japonica cultivar-group) Os01g...
52
0.005
8 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
52
0.005
9 dbj|AP003282.2| Oryza sativa (japonica cultivar-group) genomic D...
52
0.005
10 dbj|AK109475.1| Oryza sativa (japonica cultivar-group) cDNA clon...
52
0.005
11 dbj|AK107515.1| Oryza sativa (japonica cultivar-group) cDNA clon...
52
0.005
12 gb|AC115067.7| Mus musculus chromosome 5, clone RP24-404B4, comp...
44
1.2
13 gb|AC160126.2| Mus musculus BAC clone RP23-295C1 from chromosome...
44
1.2
14 gb|AC109311.12| Mus musculus chromosome 5, clone RP23-42K10, com...
44
1.2
15 dbj|AK139425.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ...
44
1.2
16 dbj|AK161965.1| Mus musculus adult male olfactory brain cDNA, RI...
44
1.2
17 gb|AC109163.16| Mus musculus chromosome 8, clone RP24-174F12, co...
44
1.2
18 emb|CT010439.6| Mouse DNA sequence from clone RP23-26E8 on chrom...
44
1.2
19 ref|NM_001068826.1| Oryza sativa (japonica cultivar-group) Os08g...
42
4.8
20 gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
42
4.8
21 gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
42
4.8
22 gb|AC154740.2| Mus musculus BAC clone RP23-118I16 from chromosom...
42
4.8
23 gb|AC159547.4| Mus musculus 6 BAC RP23-235P6 (Roswell Park Cance...
42
4.8
24 ref|XM_798381.1| Trypanosoma cruzi strain CL Brener hypothetical...
42
4.8
25 ref|XM_814759.1| Trypanosoma cruzi strain CL Brener hypothetical...
42
4.8
26 dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...
42
4.8
27 dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D...
42
4.8
28 dbj|AK073336.1| Oryza sativa (japonica cultivar-group) cDNA clon...
42
4.8
29 gb|AC153620.4| Mus musculus 6 BAC RP23-326P16 (Roswell Park Canc...
42
4.8
30 gb|AC005922.1|AC005922 Homo sapiens chromosome 17, clone hRPK.23...
42
4.8
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
Length = 27566993
Score = 95.6 bits (48), Expect = 4e-16
Identities = 81/92 (88%)
Strand = Plus / Plus
Query: 1011 gtggagaaagccgcatggcgcataccctgtggcgacaaagcgcacacaggatttgtatct 1070
||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 25094146 gtggagaaagctacatggcgcataccctgtggagacgaagcgcacataggatttgtatct 25094205
Query: 1071 agcctcactttcatttcggctctggtttgctc 1102
|| ||||||| |||| ||||| ||||||||
Sbjct: 25094206 agtatcacttttctttcagctctagtttgctc 25094237
Score = 81.8 bits (41), Expect = 6e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 885 cctcttgatgccagcgattatgcaacggttgagtttggcagcccagacctgctcctacgt 944
|||||||||||||| | |||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct: 25094020 cctcttgatgccagtggttatgcgacggttgagtttggtagcccagatctgcttctacgt 25094079
Query: 945 tacag 949
|||||
Sbjct: 25094080 tacag 25094084
Score = 71.9 bits (36), Expect = 5e-09
Identities = 224/284 (78%), Gaps = 2/284 (0%)
Strand = Plus / Plus
Query: 447 cagctttctcaacatcgtgacttgaccgaagtacctgataccgctgacttgtgtaaagga 506
|||||| ||||||||||||||||||| ||| | ||||| | ||||||| || ||||||
Sbjct: 25091765 cagcttgctcaacatcgtgacttgactgaaacatctgattctgctgactcatgcaaagga 25091824
Query: 507 cttgctgatgaacttgatgtgcctgcgctttcagaagtgca-tcgtcagctggtgggtga 565
|||| | |||| ||||||| || |||| ||||| |||| ||| | ||||| |||||
Sbjct: 25091825 cttgattatgatcttgatgcacccatgcttacagaattgcactcggaa-ctggttggtga 25091883
Query: 566 aggttcccaccgccgcttaatctattctgttaaatttggtaactccaaagatggtatggt 625
|||||| || ||||| || ||||| ||| |||||| ||||| ||||| ||||||
Sbjct: 25091884 aggttctcatcgccgtctagtctatcatgtggaatttgctaactgtgcagatgctatggt 25091943
Query: 626 acaattccttgatggttacgatgccagtctggtgttaattgaaaagctcccaagaggtgt 685
| ||||||||| || ||||||| ||||||| |||| ||||| ||||| | |||||
Sbjct: 25091944 taatttccttgataactatgatgccaatctggtggtaatagaaaatctcccgaatggtgt 25092003
Query: 686 attcgccgacccatttgagctgcagcactttgttgagcggaaag 729
|| || |||||||||||||| || || ||||||||||||||||
Sbjct: 25092004 gtttgctgacccatttgagctacaacattttgttgagcggaaag 25092047
Score = 69.9 bits (35), Expect = 2e-08
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 746 tgtttttggagacacaaaccttgaactgccctctgccctgtccaactggtcagctgttga 805
|||||| |||||||| |||||||||||||| || || || |||||| ||||| |||| ||
Sbjct: 25092148 tgttttcggagacaccaaccttgaactgccttcggctctatccaaccggtcatctgtgga 25092207
Query: 806 gattcattttgatctcaagccaagcacatcaatgggctataaccttgtaatagagcttcc 865
|| ||| |||||||| ||| |||| ||| || ||||||||||||||| || ||
Sbjct: 25092208 aatccatgttgatctcgcaccacttgcatcgatgaactgtaaccttgtaatagacctgcc 25092267
Query: 866 tctccatgctagata 880
|||||||||||||||
Sbjct: 25092268 tctccatgctagata 25092282
>emb|AL713904.3 |CNS07YQ4 Oryza sativa chromosome 12, . BAC OJ1306_H03 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 121563
Score = 95.6 bits (48), Expect = 4e-16
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 1011 gtggagaaagccgcatggcgcataccctgtggcgacaaagcgcacacaggatttgtatct 1070
||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 37333 gtggagaaagctacatggcgcataccctgtggagacgaagcgcacataggatttgtatct 37274
Query: 1071 agcctcactttcatttcggctctggtttgctc 1102
|| ||||||| |||| ||||| ||||||||
Sbjct: 37273 agtatcacttttctttcagctctagtttgctc 37242
Score = 81.8 bits (41), Expect = 6e-12
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 885 cctcttgatgccagcgattatgcaacggttgagtttggcagcccagacctgctcctacgt 944
|||||||||||||| | |||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct: 37459 cctcttgatgccagtggttatgcgacggttgagtttggtagcccagatctgcttctacgt 37400
Query: 945 tacag 949
|||||
Sbjct: 37399 tacag 37395
Score = 71.9 bits (36), Expect = 5e-09
Identities = 224/284 (78%), Gaps = 2/284 (0%)
Strand = Plus / Minus
Query: 447 cagctttctcaacatcgtgacttgaccgaagtacctgataccgctgacttgtgtaaagga 506
|||||| ||||||||||||||||||| ||| | ||||| | ||||||| || ||||||
Sbjct: 39714 cagcttgctcaacatcgtgacttgactgaaacatctgattctgctgactcatgcaaagga 39655
Query: 507 cttgctgatgaacttgatgtgcctgcgctttcagaagtgca-tcgtcagctggtgggtga 565
|||| | |||| ||||||| || |||| ||||| |||| ||| | ||||| |||||
Sbjct: 39654 cttgattatgatcttgatgcacccatgcttacagaattgcactcggaa-ctggttggtga 39596
Query: 566 aggttcccaccgccgcttaatctattctgttaaatttggtaactccaaagatggtatggt 625
|||||| || ||||| || ||||| ||| |||||| ||||| ||||| ||||||
Sbjct: 39595 aggttctcatcgccgtctagtctatcatgtggaatttgctaactgtgcagatgctatggt 39536
Query: 626 acaattccttgatggttacgatgccagtctggtgttaattgaaaagctcccaagaggtgt 685
| ||||||||| || ||||||| ||||||| |||| ||||| ||||| | |||||
Sbjct: 39535 taatttccttgataactatgatgccaatctggtggtaatagaaaatctcccgaatggtgt 39476
Query: 686 attcgccgacccatttgagctgcagcactttgttgagcggaaag 729
|| || |||||||||||||| || || ||||||||||||||||
Sbjct: 39475 gtttgctgacccatttgagctacaacattttgttgagcggaaag 39432
Score = 69.9 bits (35), Expect = 2e-08
Identities = 110/135 (81%)
Strand = Plus / Minus
Query: 746 tgtttttggagacacaaaccttgaactgccctctgccctgtccaactggtcagctgttga 805
|||||| |||||||| |||||||||||||| || || || |||||| ||||| |||| ||
Sbjct: 39331 tgttttcggagacaccaaccttgaactgccttcggctctatccaaccggtcatctgtgga 39272
Query: 806 gattcattttgatctcaagccaagcacatcaatgggctataaccttgtaatagagcttcc 865
|| ||| |||||||| ||| |||| ||| || ||||||||||||||| || ||
Sbjct: 39271 aatccatgttgatctcgcaccacttgcatcgatgaactgtaaccttgtaatagacctgcc 39212
Query: 866 tctccatgctagata 880
|||||||||||||||
Sbjct: 39211 tctccatgctagata 39197
>emb|AL928754.2 |CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 146686
Score = 95.6 bits (48), Expect = 4e-16
Identities = 81/92 (88%)
Strand = Plus / Minus
Query: 1011 gtggagaaagccgcatggcgcataccctgtggcgacaaagcgcacacaggatttgtatct 1070
||||||||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||
Sbjct: 13051 gtggagaaagctacatggcgcataccctgtggagacgaagcgcacataggatttgtatct 12992
Query: 1071 agcctcactttcatttcggctctggtttgctc 1102
|| ||||||| |||| ||||| ||||||||
Sbjct: 12991 agtatcacttttctttcagctctagtttgctc 12960
Score = 81.8 bits (41), Expect = 6e-12
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 885 cctcttgatgccagcgattatgcaacggttgagtttggcagcccagacctgctcctacgt 944
|||||||||||||| | |||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct: 13177 cctcttgatgccagtggttatgcgacggttgagtttggtagcccagatctgcttctacgt 13118
Query: 945 tacag 949
|||||
Sbjct: 13117 tacag 13113
Score = 71.9 bits (36), Expect = 5e-09
Identities = 224/284 (78%), Gaps = 2/284 (0%)
Strand = Plus / Minus
Query: 447 cagctttctcaacatcgtgacttgaccgaagtacctgataccgctgacttgtgtaaagga 506
|||||| ||||||||||||||||||| ||| | ||||| | ||||||| || ||||||
Sbjct: 15406 cagcttgctcaacatcgtgacttgactgaaacatctgattctgctgactcatgcaaagga 15347
Query: 507 cttgctgatgaacttgatgtgcctgcgctttcagaagtgca-tcgtcagctggtgggtga 565
|||| | |||| ||||||| || |||| ||||| |||| ||| | ||||| |||||
Sbjct: 15346 cttgattatgatcttgatgcacccatgcttacagaattgcactcggaa-ctggttggtga 15288
Query: 566 aggttcccaccgccgcttaatctattctgttaaatttggtaactccaaagatggtatggt 625
|||||| || ||||| || ||||| ||| |||||| ||||| ||||| ||||||
Sbjct: 15287 aggttctcatcgccgtctagtctatcatgtggaatttgctaactgtgcagatgctatggt 15228
Query: 626 acaattccttgatggttacgatgccagtctggtgttaattgaaaagctcccaagaggtgt 685
| ||||||||| || ||||||| ||||||| |||| ||||| ||||| | |||||
Sbjct: 15227 taatttccttgataactatgatgccaatctggtggtaatagaaaatctcccgaatggtgt 15168
Query: 686 attcgccgacccatttgagctgcagcactttgttgagcggaaag 729
|| || |||||||||||||| || || ||||||||||||||||
Sbjct: 15167 gtttgctgacccatttgagctacaacattttgttgagcggaaag 15124
Score = 69.9 bits (35), Expect = 2e-08
Identities = 110/135 (81%)
Strand = Plus / Minus
Query: 746 tgtttttggagacacaaaccttgaactgccctctgccctgtccaactggtcagctgttga 805
|||||| |||||||| |||||||||||||| || || || |||||| ||||| |||| ||
Sbjct: 15023 tgttttcggagacaccaaccttgaactgccttcggctctatccaaccggtcatctgtgga 14964
Query: 806 gattcattttgatctcaagccaagcacatcaatgggctataaccttgtaatagagcttcc 865
|| ||| |||||||| ||| |||| ||| || ||||||||||||||| || ||
Sbjct: 14963 aatccatgttgatctcgcaccacttgcatcgatgaactgtaaccttgtaatagacctgcc 14904
Query: 866 tctccatgctagata 880
|||||||||||||||
Sbjct: 14903 tctccatgctagata 14889
>gb|AC005922.1 |AC005922 Homo sapiens chromosome 17, clone hRPK.235_I_10, complete sequence
Length = 140677
Score = 42.1 bits (21), Expect = 4.8
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1066 tatctagcctcactttcattt 1086
|||||||||||||||||||||
Sbjct: 90301 tatctagcctcactttcattt 90281
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
Posted date: Dec 3, 2006 5:45 PM
Number of letters in database: 18,610,659,111
Number of sequences in database: 4,638,285
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 206,998,880
Number of extensions: 20129368
Number of successful extensions: 217830
Number of sequences better than 10.0: 30
Number of HSP's gapped: 217830
Number of HSP's successfully gapped: 51
Length of query: 1264
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 1241
Effective length of database: 18,503,978,556
Effective search space: 22963437387996
Effective search space used: 22963437387996
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)