>LOC_Os01g64690:12001.t05836:unspliced-genomic U6 snRNA-associated Sm-like protein LSm3, putative, expressed|
          Length = 1704
 Score = 88.6 bits (187), Expect(3) = 1e-45
 Identities = 39/52 (75%), Positives = 42/52 (80%)
 Frame = +1 / +2

                                                               
Query: 46  GGARSGRE*QPAAMASEEDVAVKEPLDLIRLSLDERIYVKLRSDRELRGKLH 201
           GG         AA A+EE++AVKEPLDLIRLSLDERIYVKLRSDRELRGKLH
Sbjct: 47  GGEEEAMAAAAAAAAAEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLH 202



 Score = 78.0 bits (164), Expect(3) = 1e-45
 Identities = 32/39 (82%), Positives = 35/39 (89%)
 Frame = +1 / +1

                                                   
Query: 196  LHAYDQHLNMILGDVEEIVTSIEIDDETYEEIVRTSKRT 312
            + AYDQHLNMILGDVEEIVT++EIDDETYEEIVR S  T
Sbjct: 895  IQAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRVSVLT 1011



 Score = 60.6 bits (126), Expect(3) = 1e-45
 Identities = 25/29 (86%), Positives = 28/29 (96%)
 Frame = +1 / +2

                                         
Query: 295  RTSKRTIPYLFVRGDGVILVSPPLRTV*S 381
            +T+KRTIP+LFVRGDGVILVSPPLRT *S
Sbjct: 1394 QTTKRTIPFLFVRGDGVILVSPPLRTA*S 1480



 Score = 46.9 bits (96), Expect(3) = 3e-11
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -1 / -1

                                    
Query: 380  LHTVRKGGETSITPSPRTKR*GMV 309
            LH VR+GGET +TPSPRTKR G+V
Sbjct: 1479 LHAVRRGGETKMTPSPRTKRKGIV 1408



 Score = 34.1 bits (68), Expect(3) = 3e-11
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3 / -1

                                           
Query: 294 NNLLISLIVNFYRGHYLFYISQYHIEMLIICM 199
           +N  I LIVN    H L  IS+ H+ MLI+C+
Sbjct: 993 HNFFICLIVNLNCCHDLLNISKNHV*MLIVCL 898



 Score = 29.0 bits (57), Expect(3) = 3e-11
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -3 / -3

                         
Query: 162 DVDALVEAEPYEIQ 121
           DVDALVEAEP +IQ
Sbjct: 163 DVDALVEAEPDQIQ 122



 Score = 36.3 bits (73), Expect = 0.21
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3 / +1

                                            
Query: 303  QAHHPLPFCPRRWRDTGFAALANCMKPVLNNC 398
            + H+PLPFC R W   GF+   N MK   ++C
Sbjct: 1402 KTHYPLPFCSR*WCHFGFSTPPNGMKYEGSSC 1497



 Score = 35.9 bits (72), Expect = 0.29
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2 / +3

                                                
Query: 305  SAPSPTFLSEEMA*YWFRRPCELYEAGAEQLPLDEH 412
            +A SP+FL E M  +WF  P E +E   + LP+  H
Sbjct: 1404 NALSPSFLFEVMVSFWFLHPSERHEV*RKLLPIVNH 1511

>LOC_Os07g07220:12007.t00600:unspliced-genomic small nuclear ribonucleoprotein-associated protein B, putative,|
           expressed
          Length = 2382

 Score = 42.3 bits (86), Expect = 0.003
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = +1 / +3

                                           
Query: 151 RIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 246
           R+ V ++  R+L GK  A+D+H+N++LGD EE
Sbjct: 153 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 248

>LOC_Os05g32310:12005.t02827:unspliced-genomic SAD1, putative, expressed|
          Length = 2489

 Score = 39.1 bits (79), Expect = 0.032
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +1 / +1

                                                    
Query: 124 DLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 246
           +LI   +  +I+V ++ D+EL G L  +D ++NM+L DV E
Sbjct: 358 ELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTE 480

>LOC_Os05g24970:12005.t02154:unspliced-genomic small nuclear ribonucleoprotein Sm D2, putative, expressed|
          Length = 2809

 Score = 38.6 bits (78), Expect = 0.043
 Identities = 12/36 (33%), Positives = 26/36 (72%)
 Frame = +1 / +3

                                                
Query: 154  IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSI 261
            + +  R++++L G++ A+D+H NM+L +V E+ T +
Sbjct: 2064 VLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 2171

>LOC_Os01g73604:12001.t06640:unspliced-genomic sm protein|
          Length = 6089

 Score = 36.3 bits (73), Expect = 0.21
 Identities = 11/36 (30%), Positives = 25/36 (69%)
 Frame = +1 / +1

                                                
Query: 154  IYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTSI 261
            + +  +++++L G++ A+D H NM+L +V E+ T +
Sbjct: 5776 VLINCQNNKKLLGRVRAFDSHCNMVLENVREMWTEV 5883

>LOC_Os08g05850:12008.t00477:unspliced-genomic snRNP core Sm protein Sm-X5-like protein, putative, expressed|
          Length = 3651

 Score = 34.1 bits (68), Expect = 1.0
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +1 / +2

                                                      
Query: 103 VAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMIL 231
           VAV+      +  + + + V+L++D  +RG LH+ DQ+LN+ L
Sbjct: 587 VAVQLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKL 715

>LOC_Os09g36530:12009.t03129:unspliced-genomic nuclease, putative, expressed|
          Length = 4728

 Score = 33.1 bits (66), Expect = 2.0
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2 / -1

                                        
Query: 556  CRNQYMLTTVQCLCFVSKYMDDQLKLCS 473
            C  QYM+ T QC CF S    + L  CS
Sbjct: 4179 CHRQYMVVTAQCQCFSSSVNMNYLYDCS 4096

>LOC_Os01g46140:12001.t06779:unspliced-genomic expressed protein|
          Length = 2517

 Score = 33.1 bits (66), Expect = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2 / +2

                                                
Query: 440  ASAYTCFLEHYTA*LELIIHVFRYKAKTLYCSQHVL 547
            A+ Y CF   + +*+  ++H F  K  TL+ S HV+
Sbjct: 1703 ANLYLCFYLSHNS*IGFLLHKFIIKLATLFFSTHVM 1810

>LOC_Os12g25320:12012.t02254:unspliced-genomic transposon protein, putative, CACTA, En/Spm sub-class|
          Length = 11267

 Score = 28.6 bits (56), Expect(2) = 2.5
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3 / -2

                                                
Query: 372  CMKPVLNNCHWMSIGSNAYWMSLHQPIHVSWSITLH 479
            C  P+ + CHW S  +N    ++H P+     + +H
Sbjct: 1951 CSIPLGDACHWTSTVTNILLQNVHVPLERKHVV*VH 1844



 Score = 27.2 bits (53), Expect(2) = 2.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3 / -3

                            
Query: 327  CPRRWRDTGFAALANC 374
            C RRWRDT  A+   C
Sbjct: 4131 CARRWRDTTAASARGC 4084

>LOC_Os04g18020:12004.t01549:unspliced-genomic retrotransposon protein, putative, unclassified, expressed|
          Length = 4793

 Score = 32.7 bits (65), Expect = 2.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2 / -2

                                                
Query: 616  RYSTYYDSTFPPPACLRMSRCRNQYMLTTVQCLCFV 509
            +YS    + + PP C+R +R R    L+   C+C +
Sbjct: 2164 QYSLKCPAVYSPPRCMRSARSRFPDFLSAAACICLM 2057

>LOC_Os01g40330:12001.t03558:unspliced-genomic bZIP-like protein, putative, expressed|
          Length = 4869

 Score = 25.4 bits (49), Expect(2) = 4.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1 / -2

                        
Query: 430  GCHCISLYMFPG 465
            GC  IS+Y+FPG
Sbjct: 2093 GCSFISIYVFPG 2058



 Score = 23.5 bits (45), Expect(2) = 4.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3 / -1

                                       
Query: 459  SWSITLHSLS*SSMYFDTKQRHCTVVN 539
            SW+  + +L    M  +TKQR  TV N
Sbjct: 2058 SWNYKIVALRNIKMMANTKQRQDTVYN 1978

>LOC_Os11g43250:12011.t03855:unspliced-genomic Leucine Rich Repeat family protein, expressed|
          Length = 3217

 Score = 31.8 bits (63), Expect = 5.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2 / -1

                                 
Query: 413  RQQRVLDVTASAYTCFLEHYT 475
            RQQR++DV AS+ +C   HY+
Sbjct: 1486 RQQRIIDVAASSVSCCCLHYS 1424

>LOC_Os04g38570:12004.t03427:unspliced-genomic multidrug resistance protein 11, putative, expressed|
          Length = 6575

 Score = 31.8 bits (63), Expect = 5.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3 / -3

                                    
Query: 366  ANCMKPVLNNCHWMSIGSNAYWMS 437
            ANC   +   C WM  GS+ +W S
Sbjct: 3240 ANCSSGMTGTCGWMGHGSHGFWPS 3169

>LOC_Os04g01220:12004.t00023:unspliced-genomic retrotransposon protein, putative, Ty1-copia subclass|
          Length = 4891

 Score = 31.8 bits (63), Expect = 5.1
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2 / -1

                                          
Query: 595  STFPPPACLRMSRCRNQYMLTTVQCLCFVS 506
            ST PPP CLR SR  N     +V    F+S
Sbjct: 1468 STIPPPPCLR*SRVSNMAFTKSVSVRFFLS 1379

>LOC_Os06g02900:12006.t00182:unspliced-genomic aspartic proteinase nepenthesin-2 precursor, putative, expressed|
          Length = 3011

 Score = 31.3 bits (62), Expect = 7.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1 / +3

                                          
Query: 562  SSVDTLVEEKLSRSTYCICYQQLLRVHGSL 651
            S++  LV+E +S+S  C+C+  +  +HG L
Sbjct: 2697 SNIS*LVDEIISQSDCCLCFDAMFILHGVL 2786

>LOC_Os05g35290:12005.t03122:unspliced-genomic phenylalanine ammonia-lyase, putative, expressed|
          Length = 2514

 Score = 31.3 bits (62), Expect = 7.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2 / +2

                                      
Query: 673 YFFFFLSAANRERAAIVDNRYSTYYDS 593
           +FFFF +AAN+E  A +D+   ++ D+
Sbjct: 47  FFFFFTAAANQEAKASIDHSLCSHSDT 127

>LOC_Os10g39270:12010.t03168:unspliced-genomic nucleoid DNA-binding-like protein, putative|
          Length = 1194

 Score = 30.9 bits (61), Expect = 9.6
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = +1 / +3

                                                                     
Query: 7   ARK*QSSIQKLGFGGARSGRE*QPAAMASEEDVAVKEPLDLIRLSLDERIYVKLRSDR 180
           AR+   + Q L   GA   RE QPA          +  LD +R  L +R +  + SDR
Sbjct: 558 ARRADEAHQVLLLPGATRHREEQPAVPRRLRQTGRRRRLDAVRQDLSQRWHEPILSDR 731

>LOC_Os06g06910:12006.t00576:unspliced-genomic expressed protein|
          Length = 1320

 Score = 30.9 bits (61), Expect = 9.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3 / -2

                                  
Query: 393 NCHWMSIGSNAYWMSLHQPIHVS 461
           N  W S+ SN  W   H P+H +
Sbjct: 971 NAEWSSLASNTLWSIAHVPMHAT 903

>LOC_Os04g42610:12004.t03809:unspliced-genomic expressed protein|
          Length = 6110

 Score = 30.9 bits (61), Expect = 9.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2 / +2

                                                      
Query: 565  MSRCRNQYMLTTVQCLCFVSKYMDDQLKLCSVMLQETCIG*C 440
            +SRCRN  M T     C+  + M   L  CS+ ++     *C
Sbjct: 3734 LSRCRNWMMKTDTSGNCWPRRRMTSSLCSCSMQMKHRSCQ*C 3859


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 231,969,998
Number of extensions: 3508484
Number of successful extensions: 13168
Number of sequences better than 10.0: 19
Length of query: 224
Length of database: 55,613,886
Length adjustment: 48
Effective length of query: 176
Effective length of database: 52,912,542
Effective search space: 9312607392
Effective search space used: 9312607392
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)