ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf172b01 |
|---|---|
| Clone Library Name | barley_pub |
>Q90Z72:NFIL3_CHICK Nuclear factor interleukin-3 regulated protein - Gallus gallus| (Chicken) Length = 458 Score = 34.3 bits (77), Expect = 0.80 Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 6/154 (3%) Frame = +1 Query: 502 EKFCLVRSFMIVNSRDQLMRQQKLCLGLVLY------S*ISLSTIKCEQRPSSQSSQCNG 663 E L F +++S QKL +Y S ++++ E PS S C Sbjct: 118 ELLSLKLKFGLISSASYAQEIQKLSSSTTVYFQDYQSSKPNINSFVDEHEPSVVGSSCIS 177 Query: 664 GLGISNGPRGVRTRNKYQLKMALSQGFQLKNNCWTMEQKVQPEPSRSKETLKEPLDASGA 843 I + P+ + + +QG ++++NC + E K Q E +EP D G+ Sbjct: 178 V--IKHSPQSSMSDMSEMPSVEHTQGSRIQSNCRSPENKFQIIKQEPIELEREPRDDRGS 235 Query: 844 DYDARCNSTPISVGDPRTMENLNKPIVRIDKDSS 945 + + P +G M + + P++++++ SS Sbjct: 236 ---YKASIYPNYMGTTFNMYSHSPPLLQVNRSSS 266
>P21561:YGY3_HALSQ Hypothetical 50.6 kDa protein in the 5'region of gyrA and gyrB -| Haloferax sp. (strain Aa 2.2) Length = 437 Score = 33.9 bits (76), Expect = 1.0 Identities = 28/87 (32%), Positives = 34/87 (39%) Frame = +2 Query: 59 HLRSLRRRAHPTSGHGARPLASLHPPPSRSRWHGGMNGAARPATKARGQDALRRQGPQAD 238 HL R R P R HPP R+R + A +ARG R G + Sbjct: 236 HLEGRRGRPRPQGREAGR---GAHPPQVRARIY-------LAAGEARGLPEPRPLGVRTV 285 Query: 239 DGRGRVQGREGHPGQRLQEDGGRHPAG 319 GR++GR G G R Q G P G Sbjct: 286 HRGGRLRGRVGQAGPRPQVPGDFAPQG 312
>Q5TCY1:TTBK1_HUMAN Tau-tubulin kinase 1 - Homo sapiens (Human)| Length = 1321 Score = 33.5 bits (75), Expect = 1.4 Identities = 30/86 (34%), Positives = 35/86 (40%), Gaps = 3/86 (3%) Frame = +2 Query: 71 LRRRAHPTSGHG-ARPLASLHPPPSRSRWHGGMNGAARPATKA-RGQDALRRQGPQ-ADD 241 LR + P G G R A PP RS AAR A+ + R Q RR+ P + Sbjct: 1206 LRPKQPPGRGLGPGRAQAGARPPAPRSPRLPASTSAARNASASPRSQSLSRRESPSPSHQ 1265 Query: 242 GRGRVQGREGHPGQRLQEDGGRHPAG 319 R V G P R Q DG P G Sbjct: 1266 ARPGVPPPRGVPPARAQPDGTPSPGG 1291
>P26501:ISOA_PSEUM Isoamylase precursor - Pseudomonas sp. (strain SMP1)| Length = 776 Score = 33.5 bits (75), Expect = 1.4 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Frame = -3 Query: 613 YLTKSKSTKPGPDIIFAAALADPWNSQS*KNAPDRI-FPAMYVCLGGSSIRAYRGLPVEG 437 Y+T+ + G +F ++ PWNS + + D + +Y C G ++ +A+ P +G Sbjct: 503 YVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDG 562 Query: 436 TVSLYDSSTPNLSSSSGERTDTLTPASTGRPS*LPLMAWSSWMAATILLK 287 S S +S+ +G D A TG MA+ A T L++ Sbjct: 563 GTSTNYSWDQGMSAGTGAAVDQRRAARTG-------MAFEMLSAGTPLMQ 605
>P10342:ISOA_PSEAY Isoamylase precursor - Pseudomonas amyloderamosa| Length = 776 Score = 33.5 bits (75), Expect = 1.4 Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Frame = -3 Query: 613 YLTKSKSTKPGPDIIFAAALADPWNSQS*KNAPDRI-FPAMYVCLGGSSIRAYRGLPVEG 437 Y+T+ + G +F ++ PWNS + + D + +Y C G ++ +A+ P +G Sbjct: 503 YVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSDG 562 Query: 436 TVSLYDSSTPNLSSSSGERTDTLTPASTGRPS*LPLMAWSSWMAATILLK 287 S S +S+ +G D A TG MA+ A T L++ Sbjct: 563 GTSTNYSWDQGMSAGTGAAVDQRRAARTG-------MAFEMLSAGTPLMQ 605
>A4R715:DHH1_MAGGR ATP-dependent RNA helicase DHH1 - Magnaporthe grisea (Rice blast| fungus) (Pyricularia grisea) Length = 524 Score = 33.5 bits (75), Expect = 1.4 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Frame = +2 Query: 65 RSLRRRAHPTSGHGARPLA-SLHPPPSRSRWHGGMNGAARPATKARGQDALRR-QGPQAD 238 R + A P+S A+ A + PPP + R H G + G ++ +GP + Sbjct: 418 RPINIPAQPSSAGNAQSAAPNQGPPPQQQRPHQGQENWQNQNGRHNGSSQQQQPRGPHQN 477 Query: 239 DGRGRVQGREGHPGQ 283 GRG +GR G GQ Sbjct: 478 RGRGGGRGRGGFQGQ 492
>P03289:Y112_ADE02 Hypothetical protein F-112 - Human adenovirus 2 (HAdV-2)| Length = 112 Score = 33.1 bits (74), Expect = 1.8 Identities = 27/71 (38%), Positives = 32/71 (45%) Frame = +2 Query: 53 LTHLRSLRRRAHPTSGHGARPLASLHPPPSRSRWHGGMNGAARPATKARGQDALRRQGPQ 232 L HLR +R RAHP G+ P + R R G A AR QD L R+ P Sbjct: 16 LRHLRHVRLRAHPPHAMGS-PTQPIRARACRPRMAAG-------ARLARMQDRLLRRAPA 67 Query: 233 ADDGRGRVQGR 265 A RG +GR Sbjct: 68 A---RGLYRGR 75
>Q9NQ55:SSF1_HUMAN Suppressor of SWI4 1 homolog - Homo sapiens (Human)| Length = 473 Score = 33.1 bits (74), Expect = 1.8 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 8/61 (13%) Frame = +2 Query: 131 PPPSRSRWH-----GGMNGAARPATKARGQDALRRQGPQA---DDGRGRVQGREGHPGQR 286 P R RW G + P TK + Q A R+GP+ D GRGR +GR PG+R Sbjct: 415 PGRKRKRWEMDRGRGRLCDQKFPKTKDKSQGAQARRGPRGASRDGGRGRGRGR---PGKR 471 Query: 287 L 289 + Sbjct: 472 V 472
>Q9SQV1:RH40_ARATH Probable DEAD-box ATP-dependent RNA helicase 40 - Arabidopsis| thaliana (Mouse-ear cress) Length = 1088 Score = 32.7 bits (73), Expect = 2.3 Identities = 19/84 (22%), Positives = 33/84 (39%) Frame = +2 Query: 56 THLRSLRRRAHPTSGHGARPLASLHPPPSRSRWHGGMNGAARPATKARGQDALRRQGPQA 235 T++ R + P P + P PS + H + A+P Q ++Q Q Sbjct: 44 TNVTQYERPSAPPPHSATTPKLAQIPVPSSGQGHQAQHEQAKPVGHVSQQHGFQQQPQQF 103 Query: 236 DDGRGRVQGREGHPGQRLQEDGGR 307 R Q + HP Q++ + G+ Sbjct: 104 PSQHVRPQMMQQHPAQQMPQQSGQ 127
>Q9CYZ8:SSBP2_MOUSE Single-stranded DNA-binding protein 2 - Mus musculus (Mouse)| Length = 361 Score = 32.3 bits (72), Expect = 3.0 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = +2 Query: 104 GARPLASLHPPPSRSRWHGGMNGAARPATKARGQDALRRQGPQADDGRGR----VQGREG 271 G++PL P+R + H M G + T RG L GPQ G R G G Sbjct: 151 GSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPL---GPQNYGGAMRPPLNALGGPG 207 Query: 272 HPGQRLQEDGGR 307 PG + GGR Sbjct: 208 MPGMNMGPGGGR 219
>P81877:SSBP2_HUMAN Single-stranded DNA-binding protein 2 - Homo sapiens (Human)| Length = 361 Score = 32.3 bits (72), Expect = 3.0 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 4/72 (5%) Frame = +2 Query: 104 GARPLASLHPPPSRSRWHGGMNGAARPATKARGQDALRRQGPQADDGRGR----VQGREG 271 G++PL P+R + H M G + T RG L GPQ G R G G Sbjct: 151 GSQPLLPSGMDPTRQQGHPNMGGPMQRMTPPRGMVPL---GPQNYGGAMRPPLNALGGPG 207 Query: 272 HPGQRLQEDGGR 307 PG + GGR Sbjct: 208 MPGMNMGPGGGR 219
>Q3U962:CO5A2_MOUSE Collagen alpha-2(V) chain precursor - Mus musculus (Mouse)| Length = 1497 Score = 32.0 bits (71), Expect = 4.0 Identities = 24/68 (35%), Positives = 29/68 (42%) Frame = +2 Query: 83 AHPTSGHGARPLASLHPPPSRSRWHGGMNGAARPATKARGQDALRRQGPQADDGRGRVQG 262 A PT G L PP SR + G G P A+ GPQ DG+ V+G Sbjct: 807 AGPTGEKGEPGPRGLVGPPG-SRGNPGSRGENGPT------GAVGFAGPQGPDGQPGVKG 859 Query: 263 REGHPGQR 286 G PGQ+ Sbjct: 860 EPGEPGQK 867
>P05997:CO5A2_HUMAN Collagen alpha-2(V) chain precursor - Homo sapiens (Human)| Length = 1499 Score = 32.0 bits (71), Expect = 4.0 Identities = 24/68 (35%), Positives = 29/68 (42%) Frame = +2 Query: 83 AHPTSGHGARPLASLHPPPSRSRWHGGMNGAARPATKARGQDALRRQGPQADDGRGRVQG 262 A PT G L PP SR + G G P A+ GPQ DG+ V+G Sbjct: 809 AGPTGEKGEPGPRGLVGPPG-SRGNPGSRGENGPT------GAVGFAGPQGPDGQPGVKG 861 Query: 263 REGHPGQR 286 G PGQ+ Sbjct: 862 EPGEPGQK 869
>Q4V7C1:FR1OP_RAT FGFR1 oncogene partner - Rattus norvegicus (Rat)| Length = 399 Score = 31.6 bits (70), Expect = 5.2 Identities = 18/77 (23%), Positives = 30/77 (38%) Frame = +2 Query: 65 RSLRRRAHPTSGHGARPLASLHPPPSRSRWHGGMNGAARPATKARGQDALRRQGPQADDG 244 R ++ PTS GA L+ HPP +N + +GQ + G ++ D Sbjct: 134 RCQQKEKGPTSVEGALDLSDGHPPSKSPEGKTSVNSTPSKIPRYKGQGKKKTSGQKSGDK 193 Query: 245 RGRVQGREGHPGQRLQE 295 + + + P L E Sbjct: 194 KTSSETSQSEPSVSLSE 210
>O95684:FR1OP_HUMAN FGFR1 oncogene partner - Homo sapiens (Human)| Length = 399 Score = 31.6 bits (70), Expect = 5.2 Identities = 17/77 (22%), Positives = 29/77 (37%) Frame = +2 Query: 65 RSLRRRAHPTSGHGARPLASLHPPPSRSRWHGGMNGAARPATKARGQDALRRQGPQADDG 244 R ++ PT+G GA L+ +H PP + +GQ + G +A D Sbjct: 134 RCQQKEKGPTTGEGALDLSDVHSPPKSPEGKTSAQTTPSKIPRYKGQGKKKTSGQKAGDK 193 Query: 245 RGRVQGREGHPGQRLQE 295 + + + L E Sbjct: 194 KANDEANQSDTSVSLSE 210
>Q9C0J8:WDR33_HUMAN WD repeat protein 33 - Homo sapiens (Human)| Length = 1336 Score = 31.2 bits (69), Expect = 6.8 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 7/50 (14%) Frame = +2 Query: 152 WHGGMNGAAR-------PATKARGQDALRRQGPQADDGRGRVQGREGHPG 280 W G G R P + R +++ RR P +GR +GR+G PG Sbjct: 1077 WEGRRPGDERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPG 1126
>Q9JN46:AAM1_RHOSH Putative glycosidase - Rhodobacter sphaeroides (Rhodopseudomonas| sphaeroides) Length = 678 Score = 31.2 bits (69), Expect = 6.8 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = +2 Query: 83 AHPTSGHGARPLASLHPPPSRSRWHGGMNGAARPATKARGQDALRRQGPQADDGRGRVQG 262 A P++G G + L +R RW G+ + + R ALR P+ D QG Sbjct: 9 AAPSAGRGNQRLCDRLSSHTRPRWGSGVTDRNGESGRMRPARALR--APKGPDSEANRQG 66 Query: 263 REGHPGQRLQEDGG 304 G + + DGG Sbjct: 67 VAAATGAQDRRDGG 80
>Q6PH11:WIBG_DANRE Protein wibg homolog - Danio rerio (Zebrafish) (Brachydanio rerio)| Length = 194 Score = 31.2 bits (69), Expect = 6.8 Identities = 23/110 (20%), Positives = 46/110 (41%) Frame = +1 Query: 622 CEQRPSSQSSQCNGGLGISNGPRGVRTRNKYQLKMALSQGFQLKNNCWTMEQKVQPEPSR 801 C + P +Q + G+S + RN + + QG + K+ E ++QPEP Sbjct: 62 CVETPPQTQTQPSDAAGLSRTAK----RNMKRKEKRRQQGQETKS-----EPELQPEPEL 112 Query: 802 SKETLKEPLDASGADYDARCNSTPISVGDPRTMENLNKPIVRIDKDSSRM 951 E + L + + P + R ++NL K + ++++ R+ Sbjct: 113 QPEPEPQGLSQQMQQLELSASQGPGAADSARRLKNLRKKLRQVEELQQRV 162
>O08816:WASL_RAT Neural Wiskott-Aldrich syndrome protein - Rattus norvegicus (Rat)| Length = 501 Score = 30.8 bits (68), Expect = 8.9 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +3 Query: 57 PTSAPSAGGRIQPPVTVHALSPPYILPPPGRG 152 P PS GG PP H+ PP PPP RG Sbjct: 275 PPPPPSRGGPPPPPPPPHSSGPP---PPPARG 303
>Q91YD9:WASL_MOUSE Neural Wiskott-Aldrich syndrome protein - Mus musculus (Mouse)| Length = 501 Score = 30.8 bits (68), Expect = 8.9 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +3 Query: 57 PTSAPSAGGRIQPPVTVHALSPPYILPPPGRG 152 P PS GG PP H+ PP PPP RG Sbjct: 275 PPPPPSRGGPPPPPPPPHSSGPP---PPPARG 303
>Q95107:WASL_BOVIN Neural Wiskott-Aldrich syndrome protein - Bos taurus (Bovine)| Length = 505 Score = 30.8 bits (68), Expect = 8.9 Identities = 15/32 (46%), Positives = 16/32 (50%) Frame = +3 Query: 57 PTSAPSAGGRIQPPVTVHALSPPYILPPPGRG 152 P PS GG PP H+ PP PPP RG Sbjct: 278 PPPPPSRGGPPPPPPPPHSSGPP---PPPARG 306
>O96013:PAK4_HUMAN Serine/threonine-protein kinase PAK 4 - Homo sapiens (Human)| Length = 591 Score = 30.8 bits (68), Expect = 8.9 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Frame = +2 Query: 131 PPPSRSRWHGGMNGAARPATKARGQDALRRQGPQADDGRGRVQGRE---GHPGQRLQEDG 301 PPP+R+R GM PAT ARG GP RGR G G G R + Sbjct: 106 PPPARARQENGM--PEEPATTARG-------GPGKAGSRGRFAGHSEAGGGSGDRRRAGP 156 Query: 302 GRHP 313 + P Sbjct: 157 EKRP 160
>Q82K53:IF2_STRAW Translation initiation factor IF-2 - Streptomyces avermitilis| Length = 1046 Score = 30.8 bits (68), Expect = 8.9 Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 3/74 (4%) Frame = +2 Query: 107 ARPLASLHPPPSRSRWHGGMNGAARPATKARGQDALRRQGPQADDG-RGRVQGREG--HP 277 A P A+ P +R G ARPAT +GQ R G + D G RG R+G P Sbjct: 140 AAPAAAASGPRPGARPGAPKPGGARPATPGQGQGGQVR-GERTDRGDRGDRGDRQGAARP 198 Query: 278 GQRLQEDGGRHPAG 319 G + G R PAG Sbjct: 199 GGQAPRPGAR-PAG 211
>P65131:IF2_MYCTU Translation initiation factor IF-2 - Mycobacterium tuberculosis| Length = 900 Score = 30.8 bits (68), Expect = 8.9 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = +3 Query: 63 SAPSAGGRIQPPVTVHALSPPYILPPPGRG---GMAA*TERRGPQPRRGART 209 +A S G I P T A PP +PP + GMA R GP P+ G RT Sbjct: 99 AADSGGAAIVSPTTPAAPEPPTAVPPSPQAPHPGMAP-GARPGPVPKPGIRT 149
>P65132:IF2_MYCBO Translation initiation factor IF-2 - Mycobacterium bovis| Length = 900 Score = 30.8 bits (68), Expect = 8.9 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 3/52 (5%) Frame = +3 Query: 63 SAPSAGGRIQPPVTVHALSPPYILPPPGRG---GMAA*TERRGPQPRRGART 209 +A S G I P T A PP +PP + GMA R GP P+ G RT Sbjct: 99 AADSGGAAIVSPTTPAAPEPPTAVPPSPQAPHPGMAP-GARPGPVPKPGIRT 149
>Q4R7V3:FR1OP_MACFA FGFR1 oncogene partner - Macaca fascicularis (Crab eating macaque)| (Cynomolgus monkey) Length = 379 Score = 30.8 bits (68), Expect = 8.9 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = +2 Query: 65 RSLRRRAHPTSGHGARPLASLHPPPSRSRWHGGMNGAARPATKARGQ 205 R ++ PT+G GA L+ +HPPP G + P+ KA + Sbjct: 134 RCQQKEKGPTTGEGALDLSDVHPPPKSP--EGKTSAQTTPSKKANNE 178
>O70552:BTG4_MOUSE Protein BTG4 - Mus musculus (Mouse)| Length = 250 Score = 30.8 bits (68), Expect = 8.9 Identities = 16/41 (39%), Positives = 20/41 (48%) Frame = +2 Query: 71 LRRRAHPTSGHGARPLASLHPPPSRSRWHGGMNGAARPATK 193 L RR H G G P A+ HP P S+W RPA++ Sbjct: 184 LPRRKHLADGRGFLPGAACHPVPKSSKW-------CRPASR 217 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 171,603,110 Number of extensions: 4058270 Number of successful extensions: 13380 Number of sequences better than 10.0: 27 Number of HSP's gapped: 13250 Number of HSP's successfully gapped: 27 Length of query: 328 Length of database: 100,686,439 Length adjustment: 113 Effective length of query: 215 Effective length of database: 69,691,104 Effective search space: 14983587360 Effective search space used: 14983587360 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
