ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf166e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 278 2e-71
2gb|AC131297.11| Mus musculus chromosome 8, clone RP23-284E15, co... 44 0.65
3emb|CR956619.7| M.truncatula DNA sequence from clone MTH2-65F22 ... 44 0.65
4dbj|AB191243.1| Homo sapiens DNA, transposon SVA sequence 42 2.6
5gb|CP000383.1| Cytophaga hutchinsonii ATCC 33406, complete genome 42 2.6
6gb|AC099631.6| Mus musculus chromosome 1, clone RP24-93F22, comp... 42 2.6
7gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, co... 42 2.6
8gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome ... 42 2.6
9gb|AC139029.10| Mus musculus chromosome 14, clone RP23-393A18, c... 42 2.6
10gb|AC140322.4| Mus musculus BAC clone RP23-413F14 from chromosom... 42 2.6
11emb|AL356257.14| Human DNA sequence from clone RP11-789G22 on ch... 42 2.6
12emb|AL138969.16| Human DNA sequence from clone RP1-110C15 on chr... 42 2.6
13gb|AC108479.5| Homo sapiens BAC clone RP11-1378G18 from 2, compl... 42 2.6
14gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, co... 42 2.6
15emb|AL590763.2|HSXDPB Homo sapiens chromosome X sequence from 6... 42 2.6
16emb|AL845352.7| Mouse DNA sequence from clone RP23-29A7 on chrom... 42 2.6

>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265
 Score =  278 bits (140), Expect = 2e-71
 Identities = 203/224 (90%)
 Strand = Plus / Plus

                                                                          
Query: 2      gccgcccattgcttcccctttctccaatctttctcatcttcggcgacctagcgcagatgt 61
              |||||||||||||||||||||| |||||||||||| ||| || |||||||||| ||||||
Sbjct: 215626 gccgcccattgcttcccctttccccaatctttctcttctccgacgacctagcgtagatgt 215685

                                                                          
Query: 62     ctacctcctccaccacacactcaaaatggtgacagtatggtccaatgcctctcacaaggt 121
              ||||||||| | ||||||| |||||||||  ||| ||||||| |||||||||||||||||
Sbjct: 215686 ctacctcctacgccacacattcaaaatggcaacaatatggtctaatgcctctcacaaggt 215745

                                                                          
Query: 122    gtcctgactacccacgcccagagcctcttaaacggtgggtcagtaagactgatgacaacg 181
              ||||||||| || ||||| ||||||||||||||| || ||| |||||||||||||||| |
Sbjct: 215746 gtcctgactgcctacgccgagagcctcttaaacgttgagtctgtaagactgatgacaatg 215805

                                                          
Query: 182    gcaaccttgggcgcgaatttgtgaaatgcttgagcaaaacaatg 225
              | |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 215806 gaaaccttgggcacgaatttgtgaaatgcttgagcaaaacaatg 215849



 Score =  176 bits (89), Expect = 7e-41
 Identities = 147/167 (88%), Gaps = 2/167 (1%)
 Strand = Plus / Plus

                                                                          
Query: 443    ctgaagaagatcaagaaacatctaatgcagatgatcgatttgcataagcaagcaaatatc 502
              |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 216175 ctgaggaagatcaggaaacatctaatgcagatgatcgatttgcagaagcaagcaaatatc 216234

                                                                          
Query: 503    atggaannnnnnnttctattgttgtatcattgctctgtttttcttttacttgttgttcat 562
              |||| |       ||||||||||||||||||||||||||||||||||||||||| |||| 
Sbjct: 216235 atggcaggggg--ttctattgttgtatcattgctctgtttttcttttacttgttattcaa 216292

                                                             
Query: 563    ccgtcatgagaatgagcatttgggcctgttagggtagaggacgcgat 609
              || |||| | |||| |||||| | |||||||||| ||||||||||||
Sbjct: 216293 ccatcattacaatgggcatttagtcctgttagggcagaggacgcgat 216339



 Score =  143 bits (72), Expect = 9e-31
 Identities = 150/176 (85%)
 Strand = Plus / Plus

                                                                          
Query: 272    attcagtttgagggctacattgattcgagcgggaccgtaatctaggagctcaatttgggc 331
              ||||| ||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct: 215992 attcaatttaagggctacattgattcgagcggggccgcaatctgggagctcaatttgggc 216051

                                                                          
Query: 332    ggggagtccccgattgttgtgaagaatttggggatctcggacagaggggcaagcagggtc 391
              | |||| | |||||||||||| ||||||||||||  ||||| | | ||||  |||  |||
Sbjct: 216052 gaggagccgccgattgttgtggagaatttggggagttcggagaaacgggcgtgcaaagtc 216111

                                                                      
Query: 392    ttgtcgatggcgaggtattcgcgcaatgctgaactgcacgcgaagtccgaactgaa 447
               || |||||| ||||||| | ||||||| ||||||||||||| |||| ||||||||
Sbjct: 216112 ctgccgatggtgaggtatgcacgcaatgttgaactgcacgcggagtctgaactgaa 216167



to top

>gb|AC131297.11| Mus musculus chromosome 8, clone RP23-284E15, complete sequence
          Length = 188817

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 444   tgaagaagatcaagaaacatct 465
             ||||||||||||||||||||||
Sbjct: 97503 tgaagaagatcaagaaacatct 97524



to top

>emb|CR956619.7| M.truncatula DNA sequence from clone MTH2-65F22 on chromosome 3,
             complete sequence
          Length = 148409

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 531   attgctctgtttttcttttact 552
             ||||||||||||||||||||||
Sbjct: 57073 attgctctgtttttcttttact 57052



to top

>dbj|AB191243.1| Homo sapiens DNA, transposon SVA sequence
          Length = 463567

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 644    aagcaaaaaattggaaaatta 664
              |||||||||||||||||||||
Sbjct: 307867 aagcaaaaaattggaaaatta 307847



to top

>gb|CP000383.1| Cytophaga hutchinsonii ATCC 33406, complete genome
          Length = 4433218

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 531     attgctctgtttttcttttac 551
               |||||||||||||||||||||
Sbjct: 1386452 attgctctgtttttcttttac 1386472



to top

>gb|AC099631.6| Mus musculus chromosome 1, clone RP24-93F22, complete sequence
          Length = 185048

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 539    gtttttcttttacttgttgtt 559
              |||||||||||||||||||||
Sbjct: 156375 gtttttcttttacttgttgtt 156395



to top

>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence
          Length = 264062

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 539    gtttttcttttacttgttgtt 559
              |||||||||||||||||||||
Sbjct: 214714 gtttttcttttacttgttgtt 214694



to top

>gb|AC129190.3| Mus musculus BAC clone RP24-79D2 from chromosome 1, complete sequence
          Length = 236342

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 539    gtttttcttttacttgttgtt 559
              |||||||||||||||||||||
Sbjct: 191453 gtttttcttttacttgttgtt 191433



to top

>gb|AC139029.10| Mus musculus chromosome 14, clone RP23-393A18, complete sequence
          Length = 204943

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 535   ctctgtttttcttttacttgttgtt 559
             |||||||||||||||||||| ||||
Sbjct: 25404 ctctgtttttcttttacttggtgtt 25380



to top

>gb|AC140322.4| Mus musculus BAC clone RP23-413F14 from chromosome 14, complete
             sequence
          Length = 205679

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 535   ctctgtttttcttttacttgttgtt 559
             |||||||||||||||||||| ||||
Sbjct: 65781 ctctgtttttcttttacttggtgtt 65805



to top

>emb|AL356257.14| Human DNA sequence from clone RP11-789G22 on chromosome 13 Contains the
             5' end of the ABCC4 gene for ATP-binding cassette,
             sub-family C (CFTR/MRP), member4, a novel gene and a CpG
             island, complete sequence
          Length = 193483

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 529   tcattgctctgtttttctttt 549
             |||||||||||||||||||||
Sbjct: 40917 tcattgctctgtttttctttt 40897



to top

>emb|AL138969.16| Human DNA sequence from clone RP1-110C15 on chromosome X, complete
             sequence
          Length = 144658

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 348   ttgtgaagaatttggggatct 368
             |||||||||||||||||||||
Sbjct: 28958 ttgtgaagaatttggggatct 28938



to top

>gb|AC108479.5| Homo sapiens BAC clone RP11-1378G18 from 2, complete sequence
          Length = 184433

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 348   ttgtgaagaatttggggatct 368
             |||||||||||||||||||||
Sbjct: 23987 ttgtgaagaatttggggatct 24007



to top

>gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, complete sequence
          Length = 190133

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 643   gaagcaaaaaattggaaaatt 663
             |||||||||||||||||||||
Sbjct: 65892 gaagcaaaaaattggaaaatt 65872



to top

>emb|AL590763.2|HSXDPB Homo sapiens chromosome X  sequence from 6 PACs 1 BAC and 1 cosmid,
             region GJB1-DXS559 map Xq13.1, complete sequence
          Length = 248968

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 644   aagcaaaaaattggaaaatta 664
             |||||||||||||||||||||
Sbjct: 25800 aagcaaaaaattggaaaatta 25780



to top

>emb|AL845352.7| Mouse DNA sequence from clone RP23-29A7 on chromosome 2, complete
              sequence
          Length = 196996

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 537    ctgtttttcttttacttgttg 557
              |||||||||||||||||||||
Sbjct: 144992 ctgtttttcttttacttgttg 145012


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 120,350,130
Number of extensions: 6443396
Number of successful extensions: 170714
Number of sequences better than 10.0: 16
Number of HSP's gapped: 170713
Number of HSP's successfully gapped: 19
Length of query: 682
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 660
Effective length of database: 18,508,616,841
Effective search space: 12215687115060
Effective search space used: 12215687115060
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
to top