Clone Information

BLAST Search Result

Clone Name	FLbaf166d19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	LOC_Os05g45740:12005.t04062:unspliced-genomic hydrogen-trans...	139	1e-64
2	LOC_Os01g41610:12001.t03682:unspliced-genomic hydrogen-trans...	120	1e-52
3	LOC_Os01g52200:12001.t04647:unspliced-genomic hydrogen-trans...	102	2e-42
4	LOC_Os02g07850:12002.t00681:unspliced-genomic conserved hypo...	37	0.20
5	LOC_Os10g39450:12010.t03187:unspliced-genomic ring finger pr...	29	0.25
6	LOC_Os08g32610:12008.t03006:unspliced-genomic ubiquitin-prot...	36	0.38
7	LOC_Os07g36360:12007.t03307:unspliced-genomic retrotransposo...	36	0.38
8	LOC_Os03g62370:12003.t05462:unspliced-genomic WD40-like Beta...	35	0.73
9	LOC_Os05g11990:12005.t01029:unspliced-genomic electron trans...	26	1.0
10	LOC_Os07g17250:12007.t01585:unspliced-genomic disease resist...	29	1.0
11	LOC_Os04g41040:12004.t03665:unspliced-genomic DNA-directed R...	29	1.1
12	LOC_Os04g34140:12004.t03089:unspliced-genomic photoperiod re...	34	1.4
13	LOC_Os10g35670:12010.t02859:unspliced-genomic RNA-binding pr...	34	1.9
14	LOC_Os11g34470:12011.t03000:unspliced-genomic hypothetical p...	33	2.6
15	LOC_Os01g40600:12001.t03584:unspliced-genomic coiled-coil do...	33	2.6
16	LOC_Os02g52730:12002.t04853:unspliced-genomic ferredoxin--ni...	26	3.4
17	LOC_Os06g05804:12006.t04893:unspliced-genomic trafficking pr...	27	3.5
18	LOC_Os12g43890:12012.t04056:unspliced-genomic GNS1/SUR4 memb...	33	3.6
19	LOC_Os12g02090:12012.t00106:unspliced-genomic teosinte branc...	33	3.6
20	LOC_Os03g21540:12003.t01907:unspliced-genomic protein kinase...	33	3.6
21	LOC_Os08g42680:12008.t03997:unspliced-genomic hypothetical p...	32	4.9
22	LOC_Os07g37890:12007.t03457:unspliced-genomic catalytic/ pro...	32	4.9
23	LOC_Os07g36370:12007.t03308:unspliced-genomic F-box domain c...	32	4.9
24	LOC_Os05g43140:12005.t03807:unspliced-genomic expressed protein	32	4.9
25	LOC_Os05g03120:12005.t00209:unspliced-genomic myosin heavy c...	32	4.9
26	LOC_Os01g16714:12001.t01520:unspliced-genomic disulfide oxid...	31	5.2
27	LOC_Os12g04860:12012.t00373:unspliced-genomic DTW domain con...	27	6.1
28	LOC_Os08g13280:12008.t01206:unspliced-genomic expressed protein	32	6.7
29	LOC_Os11g07310:12011.t00622:unspliced-genomic hypothetical p...	26	7.0
30	LOC_Os11g04850:12011.t00378:unspliced-genomic DTW, putative,...	27	7.1
31	LOC_Os03g44430:12003.t03831:unspliced-genomic expressed protein	29	7.2
32	LOC_Os07g36320:12007.t03304:unspliced-genomic F-box domain c...	26	7.4
33	LOC_Os01g34470:12001.t03005:unspliced-genomic hypothetical p...	29	8.1
34	LOC_Os12g07120:12012.t00597:unspliced-genomic basic proline-...	31	9.2
35	LOC_Os11g42430:12011.t03774:unspliced-genomic solute carrier...	31	9.2
36	LOC_Os09g23740:12009.t02057:unspliced-genomic 1-phosphatidyl...	31	9.2
37	LOC_Os08g03500:12008.t00244:unspliced-genomic speckle-type P...	31	9.2
38	LOC_Os06g17490:12006.t01621:unspliced-genomic protein kinase...	31	9.2
39	LOC_Os06g04850:12006.t00374:unspliced-genomic homeobox-leuci...	31	9.2
40	LOC_Os05g15370:12005.t01309:unspliced-genomic 50S ribosomal ...	31	9.2
41	LOC_Os03g46440:12003.t04012:unspliced-genomic regulatory pro...	31	9.2
42	LOC_Os02g04610:12002.t00360:unspliced-genomic expressed protein	31	9.2
43	LOC_Os01g07240:12001.t00603:unspliced-genomic expressed protein	31	9.2
44	LOC_Os02g09750:12002.t00822:unspliced-genomic lycopene beta ...	27	9.3
45	LOC_Os08g12140:12008.t01094:unspliced-genomic retrotransposo...	28	9.3

>LOC_Os05g45740:12005.t04062:unspliced-genomic hydrogen-transporting ATP synthase, rotational mechanism, putative,|
            expressed
          Length = 1934
 Score =  139 bits (298), Expect(3) = 1e-64
 Identities = 54/68 (79%), Positives = 57/68 (83%)
 Frame = +2 / +3

                                                                        
Query: 341  SIPGRCEAFWKEVDQVKQLWRNRSDLNVEHAGIAALFGLELYGWFCVGEIAGRGFTLTGY 520
            S+PGR EAFWKE DQVK LWRNR DLNVEHAG+AALFG+ELY WFCVGEI GRGFT TGY
Sbjct: 1518 SLPGRYEAFWKEADQVKNLWRNRKDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGY 1697

                    
Query: 521  SV*APSFH 544
             V*  S H
Sbjct: 1698 HV*VLSNH 1721



 Score =  127 bits (272), Expect(3) = 1e-64
 Identities = 48/63 (76%), Positives = 58/63 (92%)
 Frame = +2 / +1

                                                                       
Query: 152 MAALGSKLAQLQAKACEATRFAARHGCAYHKTLMEKNKQFVVQPPTVEKCQELSKQLFYT 331
           MAAL SKLAQ+QAKAC+A RFAA+HGCAYH+ LMEKN+++V  PPT+E+CQELSKQLFYT
Sbjct: 214 MAALASKLAQMQAKACDAARFAAKHGCAYHRALMEKNQKYVADPPTIERCQELSKQLFYT 393

              
Query: 332 RIA 340
           R+A
Sbjct: 394 RLA 402



 Score = 25.8 bits (50), Expect(3) = 1e-64
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1 / +3

                             
Query: 16  KSRPLPKERTTHAQAQPT 69
           KSRPLP + T  A A PT
Sbjct: 126 KSRPLPHDLTAFAVAIPT 179



 Score =  114 bits (244), Expect(2) = 3e-40
 Identities = 52/77 (67%), Positives = 54/77 (70%)
 Frame = -3 / -2

                                                                        
Query: 570  *STAAERYSWKEGAQTL*PVKVKPLPAISPTQNHP*SSRPNSAAMPACSTFRSLLFLHSC 391
            * TA+ R  W    QT *PVKV PLP ISPTQNH  +S P SAA PACSTFRS LFLH  
Sbjct: 1747 *ETASRRLMWLLSTQTW*PVKVNPLPTISPTQNHAYNSMPKSAATPACSTFRSFLFLHKF 1568

                             
Query: 390  FTWSTSFQNASQRPGML 340
            FT S SFQNAS RPG L
Sbjct: 1567 FT*SASFQNAS*RPGRL 1517



 Score = 74.8 bits (157), Expect(2) = 3e-40
 Identities = 35/64 (54%), Positives = 36/64 (56%)
 Frame = -3 / -1

                                                                       
Query: 342 LAMRV*KSCLESSWHFSTVGGCTTNCLFFSMRVLW*AQPCLAANRVXXXXXXXXXXXLDP 163
           LA RV*KSCLESSWH S VGG  T   FFSM  LW A PC AAN              D 
Sbjct: 404 LARRV*KSCLESSWHLSMVGGSATYFWFFSMSALWYAHPCFAANLAASHAFACICASFDA 225

               
Query: 162 SAAM 151
           SAA+
Sbjct: 224 SAAI 213



 Score = 65.7 bits (137), Expect(2) = 2e-14
 Identities = 31/56 (55%), Positives = 35/56 (62%)
 Frame = +1 / +3

                                                                   
Query: 196 LRGDAVRGQARLRLPQDPHGEEQXXXXXXXXXXEVPGALQAALLHPHRQHPWPLRS 363
           +R   VRG+AR+R+PQ  HGEE           EVPGALQAALLHP RQ   P RS
Sbjct: 258 VRRGEVRGEARVRVPQGAHGEEPEVRRRPAHHREVPGALQAALLHPPRQVGPPSRS 425



 Score = 37.3 bits (75), Expect(2) = 2e-14
 Identities = 17/28 (60%), Positives = 18/28 (64%)
 Frame = +1 / +2

                                        
Query: 340  QHPWPLRSILEGGGPSEAAVEKQERSER 423
            Q  W L  ILEG G SE  VEKQ+ SER
Sbjct: 1517 QPSWSL*GILEGSGSSEELVEKQKGSER 1600



 Score = 73.5 bits (154), Expect = 2e-12
 Identities = 32/61 (52%), Positives = 44/61 (72%)
 Frame = -2 / -1

                                                                        
Query: 529  SDAVAS*GETPAGNLTDAEPPVELEAEQRSDARVLHVQIAPVSPQLLHLVHLLPECFAAA 350
            SD VAS  ++   +LT+AEP V+L A++ S+A +L+VQI  VSPQ+LHL+  LPEC  A 
Sbjct: 1706 SDMVASESKSSTNDLTNAEPRVQLNAKKCSNASMLNVQILSVSPQVLHLIRFLPECLIAT 1527

             
Query: 349  R 347
            R
Sbjct: 1526 R 1524



 Score = 38.2 bits (77), Expect = 0.079
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = -1 / -3

                                       
Query: 428  APRSDRSCFSTAASLGPPPSRMLRSGQ 348
            A RSD  CFST++SL P PSRM  S Q
Sbjct: 1605 AQRSDPFCFSTSSSLDPLPSRMPHSDQ 1525

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>LOC_Os01g41610:12001.t03682:unspliced-genomic hydrogen-transporting ATP synthase, rotational mechanism, putative,|
            expressed
          Length = 3401

 Score =  120 bits (256), Expect(2) = 1e-52
 Identities = 46/66 (69%), Positives = 52/66 (78%)
 Frame = +2 / +2

                                                                        
Query: 341  SIPGRCEAFWKEVDQVKQLWRNRSDLNVEHAGIAALFGLELYGWFCVGEIAGRGFTLTGY 520
            S+PGR EAFWKE D VKQ+W+NR +L VE  GI  LFG+ELY WFCVGEI GRGFT+TGY
Sbjct: 2915 SLPGRYEAFWKEFDGVKQVWKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGY 3094

                  
Query: 521  SV*APS 538
             V*  S
Sbjct: 3095 KV*KSS 3112



 Score =  111 bits (238), Expect(2) = 1e-52
 Identities = 43/63 (68%), Positives = 55/63 (87%)
 Frame = +2 / +1

                                                                       
Query: 152 MAALGSKLAQLQAKACEATRFAARHGCAYHKTLMEKNKQFVVQPPTVEKCQELSKQLFYT 331
           + A+ S+LAQL++KA +A+   ++HGCAY+K +MEKNKQ VVQPPTVEKCQELSKQLFYT
Sbjct: 340 LQAMASRLAQLRSKAAQASELVSKHGCAYYKEVMEKNKQHVVQPPTVEKCQELSKQLFYT 519

              
Query: 332 RIA 340
           R+A
Sbjct: 520 RLA 528



 Score = 94.1 bits (199), Expect(2) = 5e-35
 Identities = 41/62 (66%), Positives = 44/62 (70%)
 Frame = -3 / -3

                                                                        
Query: 525  TL*PVKVKPLPAISPTQNHP*SSRPNSAAMPACSTFRSLLFLHSCFTWSTSFQNASQRPG 346
            TL*PV V PLP ISPTQNH *SS PN+  +P  ST  S LF H+C T S SFQNAS RPG
Sbjct: 3099 TL*PVMVNPLPTISPTQNHA*SSTPNNVTIPRSSTLSSFLFFHTCLTPSNSFQNAS*RPG 2920

              
Query: 345  ML 340
             L
Sbjct: 2919 KL 2914



 Score = 79.0 bits (166), Expect(2) = 5e-35
 Identities = 33/40 (82%), Positives = 34/40 (85%)
 Frame = -3 / -1

                                                   
Query: 342 LAMRV*KSCLESSWHFSTVGGCTTNCLFFSMRVLW*AQPC 223
           LA RV*KSCLESSWHFSTVGGCTT CLFFS+  L *A PC
Sbjct: 530 LARRV*KSCLESSWHFSTVGGCTTCCLFFSITSL**AHPC 411



 Score = 52.8 bits (109), Expect = 3e-06
 Identities = 26/47 (55%), Positives = 28/47 (59%)
 Frame = +1 / +3

                                                          
Query: 202 GDAVRGQARLRLPQDPHGEEQXXXXXXXXXXEVPGALQAALLHPHRQ 342
           G   R +AR+RL Q   GEEQ          EVPGALQAALLHP RQ
Sbjct: 390 GVGARVEARVRLLQGGDGEEQAARGAATHRGEVPGALQAALLHPPRQ 530



 Score = 51.5 bits (106), Expect = 8e-06
 Identities = 21/59 (35%), Positives = 37/59 (62%)
 Frame = -2 / -2

                                                                       
Query: 526  DAVAS*GETPAGNLTDAEPPVELEAEQRSDARVLHVQIAPVSPQLLHLVHLLPECFAAA 350
            D +A  GE+ A NL  AEP ++L ++   +++VL++++  + P LL  +  LP+C  AA
Sbjct: 3100 DLIAGYGESSANNLAYAEPRIKLNSK*CHNSKVLYLELLSILPYLLDTIKFLPKCLIAA 2924

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>LOC_Os01g52200:12001.t04647:unspliced-genomic hydrogen-transporting ATP synthase, rotational mechanism, putative|
          Length = 2199

 Score =  102 bits (218), Expect(3) = 2e-42
 Identities = 38/57 (66%), Positives = 50/57 (87%)
 Frame = +2 / +1

                                                                    
Query: 179 QLQAKACEATRFAARHGCAYHKTLMEKNKQFVVQPPTVEKCQELSKQLFYTRIASIP 349
           QLQ++ACEATR AA+HG A+H+ LME+NK++V+ PPT++ CQELSKQLFYTR+A  P
Sbjct: 115 QLQSRACEATRSAAKHGRAFHEELMERNKRYVIDPPTIQTCQELSKQLFYTRLARSP 285



 Score = 61.6 bits (128), Expect(3) = 2e-42
 Identities = 24/43 (55%), Positives = 28/43 (65%)
 Frame = +2 / +1

                                                       
Query: 401  RNRSDLNVEHAGIAALFGLELYGWFCVGEIAGRGFTLTGYSV* 529
            R   +L  E  G+A LFG+EL  WF  GE+ GRGFT TGY V*
Sbjct: 2071 RKNLNLKAEDIGVATLFGIELIAWFAGGEVVGRGFTFTGYHV* 2199



 Score = 54.2 bits (112), Expect(3) = 2e-42
 Identities = 20/32 (62%), Positives = 25/32 (78%)
 Frame = +2 / +1

                                            
Query: 332  RIASIPGRCEAFWKEVDQVKQLWRNRSDLNVE 427
            R  SIPGR E+FWKEVD  K LW+NR +LN++
Sbjct: 1996 RSCSIPGRYESFWKEVDGAKLLWKNRKNLNLK 2091



 Score = 63.4 bits (132), Expect(3) = 7e-24
 Identities = 30/45 (66%), Positives = 31/45 (68%)
 Frame = -3 / -2

                                                        
Query: 348 GMLAMRV*KSCLESSWHFSTVGGCTTNCLFFSMRVLW*AQPCLAA 214
           G LA RV*KSCLESSWH   VGG  T  LF SM   W A+PCLAA
Sbjct: 284 GDLARRV*KSCLESSWHVWMVGGSMT*RLFRSMSSSWNARPCLAA 150



 Score = 50.6 bits (104), Expect(3) = 7e-24
 Identities = 23/42 (54%), Positives = 25/42 (59%)
 Frame = -3 / -2

                                                      
Query: 525  TL*PVKVKPLPAISPTQNHP*SSRPNSAAMPACSTFRSLLFL 400
            T *PVKV PLP  SP  NH  +S PN+ A P  S FR   FL
Sbjct: 2195 TW*PVKVNPLPTTSPPANHAINSIPNNVATPISSAFRFRFFL 2070



 Score = 41.4 bits (84), Expect(3) = 7e-24
 Identities = 19/30 (63%), Positives = 19/30 (63%)
 Frame = -3 / -2

                                          
Query: 420  FRSLLFLHSCFTWSTSFQNASQRPGMLAMR 331
            FR  LF H  F  STSFQN S RPGML  R
Sbjct: 2084 FRFFLFFHKSFAPSTSFQNDS*RPGMLQDR 1995



 Score = 66.6 bits (139), Expect(2) = 2e-17
 Identities = 29/51 (56%), Positives = 33/51 (64%)
 Frame = +1 / +3

                                                              
Query: 196 LRGDAVRGQARLRLPQDPHGEEQXXXXXXXXXXEVPGALQAALLHPHRQHP 348
           +RGD  RGQAR R+P+  HG EQ          +VPGALQAALLHP RQ P
Sbjct: 132 VRGDEERGQARARVPRGAHGAEQALRHRPAHHPDVPGALQAALLHPPRQVP 284



 Score = 46.4 bits (95), Expect(2) = 2e-17
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = +1 / +3

                                             
Query: 340  QHPWPLRSILEGGGPSEAAVEKQERSERGARGH 438
            QHPWPLR +LE G   +A VEKQE S+   RG+
Sbjct: 2004 QHPWPLRVVLERG*WRKALVEKQEESKSKGRGY 2102



 Score = 54.7 bits (113), Expect(2) = 1e-07
 Identities = 24/39 (61%), Positives = 30/39 (76%)
 Frame = +2 / +1

                                                  
Query: 152 MAALGSKLAQLQAKACEATRFAARHGCAYHKTLMEKNKQ 268
           MAALGSKLA L + A EA R AAR GCAY+K ++E ++Q
Sbjct: 1   MAALGSKLATLGSAAREAARVAARQGCAYNKAVVEGSRQ 117



 Score = 24.9 bits (48), Expect(2) = 1e-07
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3 / +2

                              
Query: 366  SGRRWTK*SSCGETGAI* 419
            SG+R    SSCG+TG I*
Sbjct: 2030 SGKRLMAQSSCGKTGRI* 2083

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>LOC_Os02g07850:12002.t00681:unspliced-genomic conserved hypothetical protein|
          Length = 2909

 Score = 36.8 bits (74), Expect = 0.20
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = +1 / +3

                            
Query: 4   LRPPKSRPLPKERTTHA 54
           LRPP+ RPLP+ER THA
Sbjct: 918 LRPPRGRPLPEERYTHA 968

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>LOC_Os10g39450:12010.t03187:unspliced-genomic ring finger protein, putative, expressed|
          Length = 1075

 Score = 29.5 bits (58), Expect(2) = 0.25
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1 / -1

                            
Query: 398 TAASLGPPPSRMLRSGQ 348
           TAAS GPPP+R  R G+
Sbjct: 529 TAASRGPPPARRTRKGR 479



 Score = 24.4 bits (47), Expect(2) = 0.25
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1 / -1

                          
Query: 566 RRPRKGTHGRRALRR 522
           RR R+G+HGR A  R
Sbjct: 559 RRRRRGSHGRTAASR 515

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>LOC_Os08g32610:12008.t03006:unspliced-genomic ubiquitin-protein ligase, putative, expressed|
          Length = 2081

 Score = 35.9 bits (72), Expect = 0.38
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1 / +3

                                           
Query: 337 RQHPWPLRSILEGGGPSEAAVEKQERSERGAR 432
           R HPWP RS    GG + A    + R+ R AR
Sbjct: 234 RGHPWPTRSSCRRGGRTSAPASTRARASRSAR 329

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>LOC_Os07g36360:12007.t03307:unspliced-genomic retrotransposon protein, putative, unclassified, expressed|
          Length = 3849

 Score = 35.9 bits (72), Expect = 0.38
 Identities = 18/37 (48%), Positives = 21/37 (56%)
 Frame = -2 / -1

                                                
Query: 457 EAEQRSDARVLHVQIAPVSPQLLHLVHLLPECFAAAR 347
           EA Q   AR +H Q+  +  QLLH VHLL E F   R
Sbjct: 789 EAGQLEGARFVHHQVPKLLDQLLHDVHLLVENFGRNR 679

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>LOC_Os03g62370:12003.t05462:unspliced-genomic WD40-like Beta Propeller Repeat family protein, expressed|
          Length = 2328

 Score = 35.0 bits (70), Expect = 0.73
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1 / +1

                                                     
Query: 632  KTKTSQRASRETDWLTESSALNRRPRKGTHGRRALRRCSQL 510
            +++T++R  R T W  E+SA   +PR G   R A    S++
Sbjct: 1960 RSRTARRRGRHTSWSPETSARRCKPRAGARSRIATGSTSKM 2082

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>LOC_Os05g11990:12005.t01029:unspliced-genomic electron transporter, putative, expressed|
          Length = 3979

 Score = 25.8 bits (50), Expect(2) = 1.0
 Identities = 19/58 (32%), Positives = 24/58 (41%)
 Frame = -1 / -1

                                                                     
Query: 695 RRVEFTEPCVPFHQHQE*YFRKTKTSQRASRETDWLTESSALNRRPRKGTHGRRALRR 522
           RR+  T+    FH      F  T+ +    R TD         RRPR+G   R A RR
Sbjct: 760 RRIASTQHESNFHGTVITLFAATRGAGARGRRTDRAGWPPRTPRRPRRGG*AR*APRR 587



 Score = 25.8 bits (50), Expect(2) = 1.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1 / -1

                               
Query: 425 PRSDRSCFSTAASLGPPPSR 366
           PRS RSC + +    PPP R
Sbjct: 520 PRSTRSCTARSRRA*PPPPR 461

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>LOC_Os07g17250:12007.t01585:unspliced-genomic disease resistance RPP13-like protein 1, putative, expressed|
          Length = 3671

 Score = 29.5 bits (58), Expect(2) = 1.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1 / -1

                                
Query: 587 TESSALNRRPRKGTHGRRALR 525
           T + A   RPR+GT GRRA R
Sbjct: 350 TRTRAPRTRPRRGTRGRRARR 288



 Score = 22.1 bits (42), Expect(2) = 1.0
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3 / -3

                                              
Query: 540 KEGAQTL*PVKVKPLPAISPTQNHP*SSRPNSAAM 436
           +  A TL  + +    + SPT   P  +RPN+  M
Sbjct: 240 RSAAWTLRSMDLSAASSSSPTVTGPVDARPNARNM 136

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>LOC_Os04g41040:12004.t03665:unspliced-genomic DNA-directed RNA polymerases II 24 kDa polypeptide, putative,|
           expressed
          Length = 3031

 Score = 29.0 bits (57), Expect(2) = 1.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -1 / -2

                               
Query: 563 RPRKGTHGRRALRRCSQLR* 504
           RPR GT GR   RRC + R*
Sbjct: 657 RPRGGTSGRPPARRCGRTR* 598



 Score = 22.6 bits (43), Expect(2) = 1.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -3 / -1

                                 
Query: 441 AMPACSTFRSLLFLHSCFTWST 376
           A+ AC T R  L   SCF  ST
Sbjct: 604 ALSACCTTRMPLNTLSCFILST 539

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>LOC_Os04g34140:12004.t03089:unspliced-genomic photoperiod responsive protein, putative, expressed|
          Length = 1769

 Score = 34.1 bits (68), Expect = 1.4
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3 / -1

                               
Query: 3   AAPSQKPPPSQRKNHTRAGT 62
           A P++ PPPS R+ H RAGT
Sbjct: 857 ARPTRPPPPSPRRRHWRAGT 798

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>LOC_Os10g35670:12010.t02859:unspliced-genomic RNA-binding protein, putative, expressed|
          Length = 2945

 Score = 33.6 bits (67), Expect = 1.9
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = +1 / +3

                                               
Query: 331 PHRQHPWPLRSILEGGGPSEAAVEKQERSERGARGH 438
           P  + P PL S   GGG  EAA  ++ERS  G   H
Sbjct: 327 PRSRRPSPLDSSCRGGGGGEAAPVRRERSIGG*SNH 434

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>LOC_Os11g34470:12011.t03000:unspliced-genomic hypothetical protein|
          Length = 2965

 Score = 33.1 bits (66), Expect = 2.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1 / -1

                                                
Query: 301 PGALQAALLHPHRQHPWPLRSILEGGGPSEAAVEKQE 411
           PG ++A L    R HP PLR +     PS  A   QE
Sbjct: 397 PGDVRAVLAGQRRPHPAPLRPLPASPSPSTVATAPQE 287

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>LOC_Os01g40600:12001.t03584:unspliced-genomic coiled-coil domain-containing protein 94, putative, expressed|
          Length = 876

 Score = 33.1 bits (66), Expect = 2.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1 / +3

                                            
Query: 337 RQHPWPLRSILEGGGPSEAAVEKQERSERGARG 435
           R+HP  LR++  GGG   A   ++ R   GARG
Sbjct: 306 RRHPPLLRAVARGGGGGGAGGTRRRRRHDGARG 404

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>LOC_Os02g52730:12002.t04853:unspliced-genomic ferredoxin--nitrite reductase, chloroplast precursor, putative,|
           expressed
          Length = 3309

 Score = 25.8 bits (50), Expect(2) = 3.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3 / +1

                                     
Query: 486 RLPAGVSP*LATASERPPSMSTFPRP 563
           RLP  +SP + T    PP  S  P P
Sbjct: 268 RLPTALSPPVLTRGSIPPPPSRRPHP 345



 Score = 24.0 bits (46), Expect(2) = 3.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1 / +3

                     
Query: 328 HPHRQHPWPL 357
           H HR  PWPL
Sbjct: 237 HHHRLQPWPL 266

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>LOC_Os06g05804:12006.t04893:unspliced-genomic trafficking protein particle complex subunit 4, putative, expressed|
          Length = 2879

 Score = 27.2 bits (53), Expect(2) = 3.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1 / +1

                                
Query: 794  FALILGYKQGKHCRHLICPG 735
            F  +L     +H  HLICPG
Sbjct: 1009 FLFVLSELDSEHLAHLICPG 1068



 Score = 22.6 bits (43), Expect(2) = 3.5
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3 / +3

                                               
Query: 753  TSHLSRLHSTKCATNY*TSSTSRIYRAVCTFSPAS 649
            TSHLSR  + +      T    +++   C  SP+S
Sbjct: 1050 TSHLSRTMAQQVGRTPMTVYAWQVFGIPCMLSPSS 1154

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>LOC_Os12g43890:12012.t04056:unspliced-genomic GNS1/SUR4 membrane protein, putative, expressed|
          Length = 1213

 Score = 32.7 bits (65), Expect = 3.6
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -1 / -2

                                                 
Query: 635 RKTKTSQRASRETDWLTESSALNRRPRKGTHGRRALRR 522
           R+   S R  R     T  +   RR R+G HGRR  RR
Sbjct: 762 RRRSASTRRRRGRGGCTRGARTGRRARRGRHGRRGGRR 649

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>LOC_Os12g02090:12012.t00106:unspliced-genomic teosinte branched1 protein, putative|
          Length = 426

 Score = 32.7 bits (65), Expect = 3.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1 / -1

                                              
Query: 331 PHRQHPWPLRSILEGGGPSEAAVEKQERSERGARG 435
           P R+ P P    L G G  E AVE+QER + G  G
Sbjct: 303 PARRPPPPAGEELGGVGEDERAVERQERVDGGGGG 199

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>LOC_Os03g21540:12003.t01907:unspliced-genomic protein kinase, putative, expressed|
          Length = 3196

 Score = 32.7 bits (65), Expect = 3.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1 / -1

                                
Query: 752  HLICPGFIQLSVRQIIRPHR 693
            HL CPG I L +  ++RPHR
Sbjct: 1180 HLHCPGEIVLQIHIVVRPHR 1121

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>LOC_Os08g42680:12008.t03997:unspliced-genomic hypothetical protein|
          Length = 1290

 Score = 32.2 bits (64), Expect = 4.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -3 / +2

                                                                  
Query: 576 SS*STAAERYSWKEGAQTL*PVKVKPLPAISPTQNHP*SSRPNSAAMPACSTFRS 412
           +S +TAA R+SW   + +  P    P P   P +  P    P S  +    T+RS
Sbjct: 26  TSTATAASRFSWTRTSSSPTP*TTTPSPPSHPAEATPSRYLPGSPNLRQSPTYRS 190

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>LOC_Os07g37890:12007.t03457:unspliced-genomic catalytic/ protein phosphatase type 2C, putative, expressed|
          Length = 5521

 Score = 32.2 bits (64), Expect = 4.9
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +1 / -3

                                                   
Query: 10  PPKSRPLPKERTTHAQAQPTXXXXXXXXXXXXSPKEPSRP 129
           PP   P+PK   TH Q QP              P  P  P
Sbjct: 479 PPPPTPMPKSAQTHTQTQPRPPHATQTPTKSTPPSRPPPP 360

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>LOC_Os07g36370:12007.t03308:unspliced-genomic F-box domain containing protein, expressed|
          Length = 3352

 Score = 32.2 bits (64), Expect = 4.9
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -2 / -2

                                                
Query: 457 EAEQRSDARVLHVQIAPVSPQLLHLVHLLPECFAAAR 347
           EA Q   AR +H Q+  +  QLLH  HLL E F   R
Sbjct: 621 EAGQLEGARFVHHQVPKLVDQLLHDDHLLVENFERNR 511

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>LOC_Os05g43140:12005.t03807:unspliced-genomic expressed protein|
          Length = 1008

 Score = 32.2 bits (64), Expect = 4.9
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1 / +2

                                       
Query: 298 VPGALQAALLHPHRQHPWPLRSILEGGG 381
           +PG  +AA LHPHR+ P     +  GGG
Sbjct: 341 LPGCRRAARLHPHRRLPRRAAVLRPGGG 424

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>LOC_Os05g03120:12005.t00209:unspliced-genomic myosin heavy chain-like protein, putative, expressed|
          Length = 5055

 Score = 32.2 bits (64), Expect = 4.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3 / +1

                                  
Query: 306  SWHFSTVGGCTTNCLFFSMRVL 241
            SW+ ST+G  TT+CL + +R++
Sbjct: 2284 SWYISTLGCSTTSCLVYCLRLI 2349

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>LOC_Os01g16714:12001.t01520:unspliced-genomic disulfide oxidoreductase/ monooxygenase/ oxidoreductase, putative,|
            expressed
          Length = 5140

 Score = 31.3 bits (62), Expect(2) = 5.2
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +2 / -2

                                                
Query: 344  IPGRCEAFWKEVDQVKQLWRNRSDLNVEHAGIAALF 451
            IPGR E  W + D    +WR  + +    A +   F
Sbjct: 2667 IPGRPEGRWTDYDMPAWIWRRHAKIRQRRARVTCFF 2560



 Score = 23.1 bits (44), Expect(2) = 5.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2 / -3

                            
Query: 5    CALPKAAPFPKKEPHT 52
            C +PK   FP +  HT
Sbjct: 4319 CFMPKPQTFPNRNMHT 4272

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>LOC_Os12g04860:12012.t00373:unspliced-genomic DTW domain containing 2, putative, expressed|
          Length = 3114

 Score = 26.7 bits (52), Expect(2) = 6.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1 / +2

                                 
Query: 1   ALRPPKSRPLPKERTTHAQAQP 66
           AL PP  RPLP +   H +  P
Sbjct: 791 ALHPPPPRPLPLQPPPHPRPPP 856



 Score = 26.7 bits (52), Expect(2) = 6.1
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2 / +3

                                 
Query: 326  YTRIASIPGRCEAFWKEVDQV 388
            +T  +S+P RC +FW+ +  +
Sbjct: 1458 WTYSSSLPNRCWSFWRNIANI 1520

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>LOC_Os08g13280:12008.t01206:unspliced-genomic expressed protein|
          Length = 976

 Score = 31.8 bits (63), Expect = 6.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3 / -3

                            
Query: 117 AVASRKEQQIHPWRRWG 167
           AVASR+ ++ HP RRWG
Sbjct: 185 AVASRRRRRAHPRRRWG 135

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>LOC_Os11g07310:12011.t00622:unspliced-genomic hypothetical protein|
          Length = 614

 Score = 25.8 bits (50), Expect(2) = 7.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1 / +2

                                        
Query: 340 QHPWPLRSILEGGGPSEAAVEKQERSERG 426
           +HP P R    GGG       ++  +ERG
Sbjct: 449 RHPAPWRRRARGGGAHHQGERRRHAAERG 535



 Score = 23.1 bits (44), Expect(2) = 7.0
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2 / +2

                                         
Query: 155 AALGSKLAQLQAKACEATRFAARHGCAYHK 244
           AA+    A    +   A R  +RHGC  H+
Sbjct: 362 AAVVDAAASQLCRCDRAGRAKSRHGCTCHR 451

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>LOC_Os11g04850:12011.t00378:unspliced-genomic DTW, putative, expressed|
          Length = 2634

 Score = 26.7 bits (52), Expect(2) = 7.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1 / +3

                                 
Query: 1   ALRPPKSRPLPKERTTHAQAQP 66
           AL PP  RPLP +   H +  P
Sbjct: 195 ALHPPPPRPLPLQPPPHPRPPP 260



 Score = 26.3 bits (51), Expect(2) = 7.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2 / +1

                             
Query: 326 YTRIASIPGRCEAFWKEV 379
           +T  +S+P RC +FW+ +
Sbjct: 859 WTYSSSLPNRCWSFWRNI 912

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>LOC_Os03g44430:12003.t03831:unspliced-genomic expressed protein|
          Length = 1895

 Score = 29.0 bits (57), Expect(2) = 7.2
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -1 / -3

                                       
Query: 614 RASRETDWLTESSALNRRPRKGTHGRRA 531
           RASR     T SS   RR R+G+ GRRA
Sbjct: 162 RASRSPLAGTRSSGPGRRCRRGSRGRRA 79



 Score = 23.5 bits (45), Expect(2) = 7.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1 / -1

                             
Query: 701  PHRRVEFTEPCVPFHQH 651
            PH + +   PC+P H H
Sbjct: 1289 PHLQKQHQLPCLPPHHH 1239

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>LOC_Os07g36320:12007.t03304:unspliced-genomic F-box domain containing protein, expressed|
          Length = 1012

 Score = 25.8 bits (50), Expect(2) = 7.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2 / -2

                                    
Query: 431 AGIAALFGLELYGWFCVGEIAGRGF 505
           A  AA  GLE +GW  + E AG  F
Sbjct: 423 AARAARTGLESWGWVMMQEEAGHPF 349



 Score = 25.8 bits (50), Expect(2) = 7.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3 / -3

                                        
Query: 483 VRLPAGVSP*LATASERPPSMSTFPRPSI 569
           + + AG     ATA   PPS S  P PSI
Sbjct: 104 ISMGAGAGAGSATAVALPPSPSPSPPPSI 18

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>LOC_Os01g34470:12001.t03005:unspliced-genomic hypothetical protein|
          Length = 1566

 Score = 29.0 bits (57), Expect(2) = 8.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1 / +3

                                  
Query: 572  LNRRPRKGTHGRRALRRCSQLR 507
            L+RRPR+G  GR A RR   LR
Sbjct: 1176 LHRRPRRGGAGRVAARRGEALR 1241



 Score = 23.1 bits (44), Expect(2) = 8.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1 / +2

                           
Query: 422  RSDRSCFSTAASLGP 378
            RS RSC ++AAS  P
Sbjct: 1448 RSARSCVASAASCAP 1492

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>LOC_Os12g07120:12012.t00597:unspliced-genomic basic proline-rich protein, putative, expressed|
          Length = 1883

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1 / -3

                                                          
Query: 295 EVPGALQAALLHPHRQHPWPLRSILEGGGPSEAAVEKQERSERGARG 435
           E+ G L  +    HR+H WP  S+L      + A      S RG  G
Sbjct: 171 EIDGYLYLSYSALHRRHGWPAASLLALAARGKRAAATGRVSRRGKEG 31

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>LOC_Os11g42430:12011.t03774:unspliced-genomic solute carrier family 2, facilitated glucose transporter member 8,|
            putative, expressed
          Length = 3508

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3 / +1

                                            
Query: 318  CLESSWHFSTVGGCTTNCLFFSMRVLW*AQPC 223
            CL+S+W F+    C    L   + VLW*   C
Sbjct: 1171 CLKSNWRFNCSCWCALGYLLLILSVLW*HGAC 1266

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>LOC_Os09g23740:12009.t02057:unspliced-genomic 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding|
            protein, putative, expressed
          Length = 8229

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3 / +2

                                
Query: 3    AAPSQKPPPSQRKNHTRAGT 62
            AAP  +PPPS R++ TR G+
Sbjct: 7589 AAPRTRPPPSYRRSSTRRGS 7648

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>LOC_Os08g03500:12008.t00244:unspliced-genomic speckle-type POZ protein, putative|
          Length = 1065

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1 / -1

                                            
Query: 337 RQHPWPLRSILEGGGPSEAAVEKQERSERGARG 435
           R+HP       +GGG +   VE+ E  ERG RG
Sbjct: 303 REHPGRAGGPGDGGGAAGVLVEQAELVERGGRG 205

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>LOC_Os06g17490:12006.t01621:unspliced-genomic protein kinase, putative, expressed|
          Length = 2562

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1 / +2

                                                        
Query: 304  GALQAALLHPHRQHPWPLRSILEGGGPSEAAVEKQERSERGARG 435
            G  Q   LHPHR+H    R+ +   G    A  + +   RGARG
Sbjct: 1715 GPQQEPRLHPHRRHHGLPRAGVPPVGQGHRADRRVQLRRRGARG 1846

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>LOC_Os06g04850:12006.t00374:unspliced-genomic homeobox-leucine zipper protein ATHB-4, putative, expressed|
          Length = 1378

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1 / -2

                                              
Query: 623 TSQRASRETDWLTESSALNRRPRKGTHGRRALRRC 519
           ++ R  R   W T +S   RR R+ +  RR  RRC
Sbjct: 588 STPRGRRPGPWTTAASCARRRRRRRSRRRRPRRRC 484

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>LOC_Os05g15370:12005.t01309:unspliced-genomic 50S ribosomal protein L13, putative, expressed|
          Length = 6491

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3 / +2

                              
Query: 3  AAPSQKPPPSQRKNHTRAGT 62
          A P   PPP QR NH+R  T
Sbjct: 14 APPPSPPPPPQRSNHSRRAT 73

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>LOC_Os03g46440:12003.t04012:unspliced-genomic regulatory protein NPR1, putative, expressed|
          Length = 7537

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = -3 / +3

                                                                        
Query: 486  SPTQNHP*SSRPNSAAMPACSTFRSLLFLHSCFTWSTSFQNASQRPGMLAMRV*KSCLES 307
            SP    P S  P+S+     ST      LHS FT + SF+      G++       CL++
Sbjct: 1104 SPRTPPPASRSPSSSPSSR*STVTQTCSLHS*FTSNFSFRKFLLLDGVVNFLQISMCLQT 1283

                
Query: 306  SWHF 295
              HF
Sbjct: 1284 IHHF 1295

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>LOC_Os02g04610:12002.t00360:unspliced-genomic expressed protein|
          Length = 1607

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1 / -1

                                  
Query: 593 WLTESSALNRRPRKGTHGRRALR 525
           WLT  S L+RR R+  H RR LR
Sbjct: 875 WLTPRSLLSRRHRRPPHSRRWLR 807

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>LOC_Os01g07240:12001.t00603:unspliced-genomic expressed protein|
          Length = 1218

 Score = 31.3 bits (62), Expect = 9.2
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1 / -2

                             
Query: 202 GDAVRGQARLRLPQDPHG 255
           G  V G+ARLRLPQ+ HG
Sbjct: 308 GHGVLGRARLRLPQEGHG 255

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>LOC_Os02g09750:12002.t00822:unspliced-genomic lycopene beta cyclase, chloroplast precursor, putative, expressed|
          Length = 1820

 Score = 26.7 bits (52), Expect(2) = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3 / +2

                                 
Query: 3   AAPSQKPPPSQRKNHTRAGTTN 68
           +APS  PPPS     T +G+T+
Sbjct: 278 SAPSTPPPPSSGPTTTASGSTS 343



 Score = 25.4 bits (49), Expect(2) = 9.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3 / +2

                                    
Query: 492 PAGVSP*LATASERPPSMSTFPRPS 566
           P+G  P  +  +  PPS ST P P+
Sbjct: 377 PSGPPPPSSPTTTAPPSRSTAPTPA 451

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>LOC_Os08g12140:12008.t01094:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass|
          Length = 7222

 Score = 27.6 bits (54), Expect(2) = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1 / -2

                                            
Query: 617  QRASRETDWLTESSALNRRPRKGTHGRRALRR 522
            +++ RET+         RR R+  HGR ALRR
Sbjct: 3405 RQSPRETEGRPARRRWRRRWRRRRHGRTALRR 3310



 Score = 26.3 bits (51), Expect(2) = 9.3
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1 / -3

                         
Query: 782  LGYKQGKHCRHLI 744
            LGYK G H RHL+
Sbjct: 6305 LGYKPGLHLRHLL 6267


  Database: tigr.seq.out
    Posted date:  Jul 20, 2007  8:58 AM
  Number of letters in database: 166,841,660
  Number of sequences in database:  56,278
  
Lambda     K      H
   0.318    0.134    0.401 


Matrix: BLOSUM62
Number of Sequences: 56278
Number of Hits to DB: 297,441,620
Number of extensions: 4322731
Number of successful extensions: 23802
Number of sequences better than 10.0: 45
Length of query: 281
Length of database: 55,613,886
Length adjustment: 49
Effective length of query: 232
Effective length of database: 52,856,264
Effective search space: 12262653248
Effective search space used: 12262653248
Neighboring words threshold: 13
Window for multiple hits: 40
X1: 16 ( 7.3 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result