ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf166d19 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001062679.1| Oryza sativa (japonica cultivar-group) Os05g0533800 (Os05g0533800) mRNA, complete cds Length = 378 Score = 234 bits (118), Expect = 4e-58 Identities = 283/338 (83%) Strand = Plus / Plus Query: 152 atggcggcgctggggtccaagctggcgcagctgcaggccaaggcctgcgaggcgacgcgg 211 ||||||||||||| ||| |||||||| ||| ||||||| ||||| ||||| ||| || || Sbjct: 1 atggcggcgctggcgtcgaagctggcacagatgcaggcgaaggcgtgcgacgcggcgagg 60 Query: 212 ttcgcggccaggcacggctgcgcctaccacaagaccctcatggagaagaacaagcagttc 271 |||||||| | |||||| ||||| ||||||| | | ||||||||||||||| || ||| | Sbjct: 61 ttcgcggcgaagcacgggtgcgcgtaccacagggcgctcatggagaagaaccagaagtac 120 Query: 272 gtcgtgcagccgcccaccgtcgagaagtgccaggagctctccaagcagctcttctacacc 331 |||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 121 gtcgccgacccgcccaccatcgagaggtgccaggagctctccaagcagctcttctacacc 180 Query: 332 cgcatcgccagcatccctggccgctgcgaagcattctggaaggaggtggaccaagtgaag 391 ||| |||||||| | ||||| |||| || |||||||||||||| | ||| ||||||||| Sbjct: 181 cgcctcgccagccttcctggtcgctatgaggcattctggaaggaagcggatcaagtgaag 240 Query: 392 cagctgtggagaaacaggagcgatctgaacgtggagcacgcgggcatcgctgcgctgttc 451 | ||||||||||||| | ||||||||||| ||||| || ||| | ||||| || || Sbjct: 241 aacttgtggagaaacagaaaggatctgaacgttgagcatgctggcgttgctgcacttttt 300 Query: 452 ggcctcgagctctacgggtggttctgcgtcggtgagat 489 ||| | ||| | |||| |||||||||||| |||||||| Sbjct: 301 ggcattgagttgtacgcgtggttctgcgttggtgagat 338
>emb|CT836359.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA055N08, full insert sequence Length = 655 Score = 210 bits (106), Expect = 6e-51 Identities = 280/338 (82%) Strand = Plus / Plus Query: 152 atggcggcgctggggtccaagctggcgcagctgcaggccaaggcctgcgaggcgacgcgg 211 ||||||||||||| ||| |||||||| ||| ||||||| |||| ||||| ||| || || Sbjct: 77 atggcggcgctggcgtcgaagctggcacagatgcaggcgaaggtgtgcgacgcggcgagg 136 Query: 212 ttcgcggccaggcacggctgcgcctaccacaagaccctcatggagaagaacaagcagttc 271 |||||||| | |||||| ||||| ||||||| | | ||||||||||||||| || ||| | Sbjct: 137 ttcgcggcgaagcacgggtgcgcgtaccacagggcgctcatggagaagaaccagaagtac 196 Query: 272 gtcgtgcagccgcccaccgtcgagaagtgccaggagctctccaagcagctcttctacacc 331 || | | ||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 197 gttgccgacccgcccaccatcgagaggtgccaggagctctccaagcagctcttctacacc 256 Query: 332 cgcatcgccagcatccctggccgctgcgaagcattctggaaggaggtggaccaagtgaag 391 ||| |||||||| | ||||| |||| || |||||||||||||| | ||| ||||||||| Sbjct: 257 cgcctcgccagccttcctggtcgctatgaggcattctggaaggaagcggatcaagtgaag 316 Query: 392 cagctgtggagaaacaggagcgatctgaacgtggagcacgcgggcatcgctgcgctgttc 451 | | ||||||||||| | ||||||||||| ||||| || ||| | ||||| || || Sbjct: 317 aacttctggagaaacagaaaggatctgaacgttgagcatgctggcgttgctgcacttttt 376 Query: 452 ggcctcgagctctacgggtggttctgcgtcggtgagat 489 ||| | ||| | |||| |||||||||||| |||||||| Sbjct: 377 ggcattgagttgtacgcgtggttctgcgttggtgagat 414
>dbj|AK240907.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065036M17, full insert sequence Length = 674 Score = 172 bits (87), Expect = 1e-39 Identities = 165/191 (86%) Strand = Plus / Plus Query: 152 atggcggcgctggggtccaagctggcgcagctgcaggccaaggcctgcgaggcgacgcgg 211 ||||||||||||| ||| |||||||| ||| ||||||| ||||| ||||| ||| || || Sbjct: 79 atggcggcgctggcgtcgaagctggcacagatgcaggcgaaggcgtgcgacgcggcgagg 138 Query: 212 ttcgcggccaggcacggctgcgcctaccacaagaccctcatggagaagaacaagcagttc 271 |||||||| | |||||| ||||| ||||||| | | ||||||||||||||| || ||| | Sbjct: 139 ttcgcggcgaagcacgggtgcgcgtaccacagggcgctcatggagaagaaccagaagtac 198 Query: 272 gtcgtgcagccgcccaccgtcgagaagtgccaggagctctccaagcagctcttctacacc 331 |||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 199 gtcgccgacccgcccaccatcgagaggtgccaggagctctccaagcagctcttctacacc 258 Query: 332 cgcatcgccag 342 ||| ||||||| Sbjct: 259 cgcctcgccag 269 Score = 71.9 bits (36), Expect = 4e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 362 gcattctggaaggaggtggaccaagtgaagcagctgtggagaaacaggagcgatctgaac 421 |||||||||||||| | ||| ||||||||| | ||||||||||||| | ||||||||| Sbjct: 306 gcattctggaaggaagcggatcaagtgaagaacttgtggagaaacagaaaggatctgaac 365 Query: 422 gtggagcacgcgggcatcgctgcgctgttcggcctcgagctctacgggtggttctgcgtc 481 || ||||| || ||| | ||||| || || ||| | ||| | |||| |||||||||||| Sbjct: 366 gttgagcatgctggcgttgctgcactttttggcattgagttgtacgcgtggttctgcgtt 425 Query: 482 ggtgagat 489 |||||||| Sbjct: 426 ggtgagat 433
>gb|AC121365.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0053E05, complete sequence Length = 196284 Score = 172 bits (87), Expect = 1e-39 Identities = 165/191 (86%) Strand = Plus / Plus Query: 152 atggcggcgctggggtccaagctggcgcagctgcaggccaaggcctgcgaggcgacgcgg 211 ||||||||||||| ||| |||||||| ||| ||||||| ||||| ||||| ||| || || Sbjct: 142174 atggcggcgctggcgtcgaagctggcacagatgcaggcgaaggcgtgcgacgcggcgagg 142233 Query: 212 ttcgcggccaggcacggctgcgcctaccacaagaccctcatggagaagaacaagcagttc 271 |||||||| | |||||| ||||| ||||||| | | ||||||||||||||| || ||| | Sbjct: 142234 ttcgcggcgaagcacgggtgcgcgtaccacagggcgctcatggagaagaaccagaagtac 142293 Query: 272 gtcgtgcagccgcccaccgtcgagaagtgccaggagctctccaagcagctcttctacacc 331 |||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 142294 gtcgccgacccgcccaccatcgagaggtgccaggagctctccaagcagctcttctacacc 142353 Query: 332 cgcatcgccag 342 ||| ||||||| Sbjct: 142354 cgcctcgccag 142364 Score = 71.9 bits (36), Expect = 4e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 362 gcattctggaaggaggtggaccaagtgaagcagctgtggagaaacaggagcgatctgaac 421 |||||||||||||| | ||| ||||||||| | ||||||||||||| | ||||||||| Sbjct: 143499 gcattctggaaggaagcggatcaagtgaagaacttgtggagaaacagaaaggatctgaac 143558 Query: 422 gtggagcacgcgggcatcgctgcgctgttcggcctcgagctctacgggtggttctgcgtc 481 || ||||| || ||| | ||||| || || ||| | ||| | |||| |||||||||||| Sbjct: 143559 gttgagcatgctggcgttgctgcactttttggcattgagttgtacgcgtggttctgcgtt 143618 Query: 482 ggtgagat 489 |||||||| Sbjct: 143619 ggtgagat 143626
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 172 bits (87), Expect = 1e-39 Identities = 165/191 (86%) Strand = Plus / Plus Query: 152 atggcggcgctggggtccaagctggcgcagctgcaggccaaggcctgcgaggcgacgcgg 211 ||||||||||||| ||| |||||||| ||| ||||||| ||||| ||||| ||| || || Sbjct: 26291126 atggcggcgctggcgtcgaagctggcacagatgcaggcgaaggcgtgcgacgcggcgagg 26291185 Query: 212 ttcgcggccaggcacggctgcgcctaccacaagaccctcatggagaagaacaagcagttc 271 |||||||| | |||||| ||||| ||||||| | | ||||||||||||||| || ||| | Sbjct: 26291186 ttcgcggcgaagcacgggtgcgcgtaccacagggcgctcatggagaagaaccagaagtac 26291245 Query: 272 gtcgtgcagccgcccaccgtcgagaagtgccaggagctctccaagcagctcttctacacc 331 |||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct: 26291246 gtcgccgacccgcccaccatcgagaggtgccaggagctctccaagcagctcttctacacc 26291305 Query: 332 cgcatcgccag 342 ||| ||||||| Sbjct: 26291306 cgcctcgccag 26291316 Score = 71.9 bits (36), Expect = 4e-09 Identities = 105/128 (82%) Strand = Plus / Plus Query: 362 gcattctggaaggaggtggaccaagtgaagcagctgtggagaaacaggagcgatctgaac 421 |||||||||||||| | ||| ||||||||| | ||||||||||||| | ||||||||| Sbjct: 26292451 gcattctggaaggaagcggatcaagtgaagaacttgtggagaaacagaaaggatctgaac 26292510 Query: 422 gtggagcacgcgggcatcgctgcgctgttcggcctcgagctctacgggtggttctgcgtc 481 || ||||| || ||| | ||||| || || ||| | ||| | |||| |||||||||||| Sbjct: 26292511 gttgagcatgctggcgttgctgcactttttggcattgagttgtacgcgtggttctgcgtt 26292570 Query: 482 ggtgagat 489 |||||||| Sbjct: 26292571 ggtgagat 26292578
>gb|AY111479.1| Zea mays CL48463_1 mRNA sequence Length = 637 Score = 168 bits (85), Expect = 2e-38 Identities = 160/185 (86%) Strand = Plus / Minus Query: 149 tccatggcggcgctggggtccaagctggcgcagctgcaggccaaggcctgcgaggcgacg 208 ||||||||| |||||||||| |||||||||||||||||| ||||||| |||||||||||| Sbjct: 547 tccatggcgccgctggggtcaaagctggcgcagctgcagtccaaggcatgcgaggcgacg 488 Query: 209 cggttcgcggccaggcacggctgcgcctaccacaagaccctcatggagaagaacaagcag 268 || ||| ||||| |||||| ||| | ||||||||||| ||||||||||||||||| || Sbjct: 487 aggatcgtggccaagcacggatgctcgtaccacaagacgctcatggagaagaacaaacac 428 Query: 269 ttcgtcgtgcagccgcccaccgtcgagaagtgccaggagctctccaagcagctcttctac 328 | ||||| | || |||||| | || |||||| |||| ||||||||||||||||||||| Sbjct: 427 tatgtcgtcgaccctcccaccattgacaagtgcaaggacctctccaagcagctcttctac 368 Query: 329 acccg 333 ||||| Sbjct: 367 acccg 363
>gb|DQ245618.1| Zea mays clone 18347 mRNA sequence Length = 643 Score = 145 bits (73), Expect = 3e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 223 gcacggctgcgcctaccacaagaccctcatggagaagaacaagcagttcgtcgtgcagcc 282 ||||||| || ||||| ||||| |||||||||||||||||||||| |||||||||||| Sbjct: 131 gcacggcggctcctactacaaggagctcatggagaagaacaagcagtacgtcgtgcagcc 190 Query: 283 gcccaccgtcgagaagtgccaggagctctccaagcagctcttctacacccgcatcgc 339 |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct: 191 ccccaccatcgagaaatgccaggagctctccaagcagctcttctacacccgcctcgc 247 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 470 tggttctgcgtcggtgagattgccggcaggggtttcaccttaactggcta 519 ||||||||||| || ||||||| ||||| |||||||||||||| ||||| Sbjct: 378 tggttctgcgtaggcgagattgttggcagaggtttcaccttaaccggcta 427
>gb|BT018346.1| Zea mays clone EL01T0403D12.c mRNA sequence Length = 681 Score = 145 bits (73), Expect = 3e-31 Identities = 106/117 (90%) Strand = Plus / Plus Query: 223 gcacggctgcgcctaccacaagaccctcatggagaagaacaagcagttcgtcgtgcagcc 282 ||||||| || ||||| ||||| |||||||||||||||||||||| |||||||||||| Sbjct: 161 gcacggcggctcctactacaaggagctcatggagaagaacaagcagtacgtcgtgcagcc 220 Query: 283 gcccaccgtcgagaagtgccaggagctctccaagcagctcttctacacccgcatcgc 339 |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| Sbjct: 221 ccccaccatcgagaaatgccaggagctctccaagcagctcttctacacccgcctcgc 277 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 470 tggttctgcgtcggtgagattgccggcaggggtttcaccttaactggcta 519 ||||||||||| || ||||||| ||||| |||||||||||||| ||||| Sbjct: 408 tggttctgcgtaggcgagattgttggcagaggtttcaccttaaccggcta 457
>gb|AY105184.1| Zea mays PCO141739 mRNA sequence Length = 861 Score = 139 bits (70), Expect = 2e-29 Identities = 112/126 (88%) Strand = Plus / Plus Query: 251 atggagaagaacaagcagttcgtcgtgcagccgcccaccgtcgagaagtgccaggagctc 310 ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||| Sbjct: 279 atggagaagaacaagcagtacgtcgttcagccccccaccgtcgagaagtgccaggagctc 338 Query: 311 tccaagcagctcttctacacccgcatcgccagcatccctggccgctgcgaagcattctgg 370 |||||||||||||| ||||||||| |||| ||| | || || |||| || |||||||| Sbjct: 339 tccaagcagctcttttacacccgcctcgcaagcctaccaggtcgctatgagtcattctgg 398 Query: 371 aaggag 376 |||||| Sbjct: 399 aaggag 404 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 470 tggttctgcgtcggtgagattgccggcaggggtttcaccttaactggcta 519 ||||||||||| || ||||||| |||||| ||||||||||| || ||||| Sbjct: 498 tggttctgcgtaggcgagattgtcggcagaggtttcaccttgaccggcta 547
>emb|CT828310.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA004I14, full insert sequence Length = 730 Score = 137 bits (69), Expect = 7e-29 Identities = 111/125 (88%) Strand = Plus / Plus Query: 251 atggagaagaacaagcagttcgtcgtgcagccgcccaccgtcgagaagtgccaggagctc 310 |||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| Sbjct: 191 atggagaagaacaagcagcacgtggtgcagccacccaccgtggagaagtgccaggagctc 250 Query: 311 tccaagcagctcttctacacccgcatcgccagcatccctggccgctgcgaagcattctgg 370 |||||||||||||||||||||||| ||||||| | || ||||||| || ||||| ||| Sbjct: 251 tccaagcagctcttctacacccgcctcgccagtttgccaggccgctatgaggcattttgg 310 Query: 371 aagga 375 ||||| Sbjct: 311 aagga 315
>emb|CT828309.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029P21, full insert sequence Length = 720 Score = 137 bits (69), Expect = 7e-29 Identities = 111/125 (88%) Strand = Plus / Plus Query: 251 atggagaagaacaagcagttcgtcgtgcagccgcccaccgtcgagaagtgccaggagctc 310 |||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| Sbjct: 205 atggagaagaacaagcagcacgtggtgcagccacccaccgtggagaagtgccaggagctc 264 Query: 311 tccaagcagctcttctacacccgcatcgccagcatccctggccgctgcgaagcattctgg 370 |||||||||||||||||||||||| ||||||| | || ||||||| || ||||| ||| Sbjct: 265 tccaagcagctcttctacacccgcctcgccagtttgccaggccgctatgaggcattttgg 324 Query: 371 aagga 375 ||||| Sbjct: 325 aagga 329
>ref|NM_001050023.1| Oryza sativa (japonica cultivar-group) Os01g0600000 (Os01g0600000) mRNA, complete cds Length = 703 Score = 137 bits (69), Expect = 7e-29 Identities = 111/125 (88%) Strand = Plus / Plus Query: 251 atggagaagaacaagcagttcgtcgtgcagccgcccaccgtcgagaagtgccaggagctc 310 |||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| Sbjct: 141 atggagaagaacaagcagcacgtggtgcagccacccaccgtggagaagtgccaggagctc 200 Query: 311 tccaagcagctcttctacacccgcatcgccagcatccctggccgctgcgaagcattctgg 370 |||||||||||||||||||||||| ||||||| | || ||||||| || ||||| ||| Sbjct: 201 tccaagcagctcttctacacccgcctcgccagtttgccaggccgctatgaggcattttgg 260 Query: 371 aagga 375 ||||| Sbjct: 261 aagga 265
>dbj|AK121212.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089H03, full insert sequence Length = 706 Score = 137 bits (69), Expect = 7e-29 Identities = 111/125 (88%) Strand = Plus / Plus Query: 251 atggagaagaacaagcagttcgtcgtgcagccgcccaccgtcgagaagtgccaggagctc 310 |||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| Sbjct: 142 atggagaagaacaagcagcacgtggtgcagccacccaccgtggagaagtgccaggagctc 201 Query: 311 tccaagcagctcttctacacccgcatcgccagcatccctggccgctgcgaagcattctgg 370 |||||||||||||||||||||||| ||||||| | || ||||||| || ||||| ||| Sbjct: 202 tccaagcagctcttctacacccgcctcgccagtttgccaggccgctatgaggcattttgg 261 Query: 371 aagga 375 ||||| Sbjct: 262 aagga 266
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 135 bits (68), Expect = 3e-28 Identities = 86/92 (93%) Strand = Plus / Minus Query: 251 atggagaagaacaagcagttcgtcgtgcagccgcccaccgtcgagaagtgccaggagctc 310 |||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| Sbjct: 23553327 atggagaagaacaagcagcacgtggtgcagccacccaccgtggagaagtgccaggagctc 23553268 Query: 311 tccaagcagctcttctacacccgcatcgccag 342 |||||||||||||||||||||||| ||||||| Sbjct: 23553267 tccaagcagctcttctacacccgcctcgccag 23553236 Score = 97.6 bits (49), Expect = 6e-17 Identities = 136/165 (82%) Strand = Plus / Minus Query: 178 gcagctgcaggccaaggcctgcgaggcgacgcggttcgcggccaggcacggctgcgccta 237 |||||||||| | | ||| |||||||||||| || |||||||| |||||| |||| | Sbjct: 30013123 gcagctgcagtcgagggcgtgcgaggcgacgaggagcgcggccaagcacgggcgcgcgtt 30013064 Query: 238 ccacaagaccctcatggagaagaacaagcagttcgtcgtgcagccgcccaccgtcgagaa 297 |||| || ||||||||| |||||||| | |||| | | ||||||||| || ||| Sbjct: 30013063 ccacgaggagctcatggagcggaacaagcgctacgtcatcgacccgcccaccatccagac 30013004 Query: 298 gtgccaggagctctccaagcagctcttctacacccgcatcgccag 342 ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 30013003 gtgccaggagctctccaagcagctcttctacacccgcctcgccag 30012959 Score = 50.1 bits (25), Expect = 0.013 Identities = 28/29 (96%) Strand = Plus / Minus Query: 150 ccatggcggcgctggggtccaagctggcg 178 ||||||||||||||||||| ||||||||| Sbjct: 30013238 ccatggcggcgctggggtcgaagctggcg 30013210
>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0518F01 Length = 154541 Score = 135 bits (68), Expect = 3e-28 Identities = 86/92 (93%) Strand = Plus / Minus Query: 251 atggagaagaacaagcagttcgtcgtgcagccgcccaccgtcgagaagtgccaggagctc 310 |||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| Sbjct: 16026 atggagaagaacaagcagcacgtggtgcagccacccaccgtggagaagtgccaggagctc 15967 Query: 311 tccaagcagctcttctacacccgcatcgccag 342 |||||||||||||||||||||||| ||||||| Sbjct: 15966 tccaagcagctcttctacacccgcctcgccag 15935
>dbj|AP003504.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025A05 Length = 154298 Score = 135 bits (68), Expect = 3e-28 Identities = 86/92 (93%) Strand = Plus / Minus Query: 251 atggagaagaacaagcagttcgtcgtgcagccgcccaccgtcgagaagtgccaggagctc 310 |||||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||| Sbjct: 116632 atggagaagaacaagcagcacgtggtgcagccacccaccgtggagaagtgccaggagctc 116573 Query: 311 tccaagcagctcttctacacccgcatcgccag 342 |||||||||||||||||||||||| ||||||| Sbjct: 116572 tccaagcagctcttctacacccgcctcgccag 116541
>dbj|AP003292.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0690B02 Length = 153116 Score = 97.6 bits (49), Expect = 6e-17 Identities = 136/165 (82%) Strand = Plus / Minus Query: 178 gcagctgcaggccaaggcctgcgaggcgacgcggttcgcggccaggcacggctgcgccta 237 |||||||||| | | ||| |||||||||||| || |||||||| |||||| |||| | Sbjct: 9113 gcagctgcagtcgagggcgtgcgaggcgacgaggagcgcggccaagcacgggcgcgcgtt 9054 Query: 238 ccacaagaccctcatggagaagaacaagcagttcgtcgtgcagccgcccaccgtcgagaa 297 |||| || ||||||||| |||||||| | |||| | | ||||||||| || ||| Sbjct: 9053 ccacgaggagctcatggagcggaacaagcgctacgtcatcgacccgcccaccatccagac 8994 Query: 298 gtgccaggagctctccaagcagctcttctacacccgcatcgccag 342 ||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 8993 gtgccaggagctctccaagcagctcttctacacccgcctcgccag 8949 Score = 50.1 bits (25), Expect = 0.013 Identities = 28/29 (96%) Strand = Plus / Minus Query: 150 ccatggcggcgctggggtccaagctggcg 178 ||||||||||||||||||| ||||||||| Sbjct: 9228 ccatggcggcgctggggtcgaagctggcg 9200
>gb|DQ244620.1| Zea mays clone 9660 mRNA sequence Length = 700 Score = 89.7 bits (45), Expect = 2e-14 Identities = 99/117 (84%) Strand = Plus / Plus Query: 217 ggccaggcacggctgcgcctaccacaagaccctcatggagaagaacaagcagttcgtcgt 276 ||||| |||||| ||| | ||||||||||| ||||||||||||||||| || | ||||| Sbjct: 290 ggccaagcacggatgctcgtaccacaagacgctcatggagaagaacaaacactatgtcgt 349 Query: 277 gcagccgcccaccgtcgagaagtgccaggagctctccaagcagctcttctacacccg 333 | || |||||| | || |||||| |||| |||||||||||||||||||||||||| Sbjct: 350 cgaccctcccaccattgacaagtgcaaggacctctccaagcagctcttctacacccg 406 Score = 61.9 bits (31), Expect = 3e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 149 tccatggcggcgctggggtccaagctggcgcagctgcag 187 ||||||||| |||||||||| |||||||||||||||||| Sbjct: 244 tccatggcgccgctggggtcaaagctggcgcagctgcag 282
>gb|AC186755.1| Musa balbisiana clone MBP_91N22, complete sequence Length = 154246 Score = 56.0 bits (28), Expect = 2e-04 Identities = 40/44 (90%) Strand = Plus / Minus Query: 287 accgtcgagaagtgccaggagctctccaagcagctcttctacac 330 ||||||||||||||||| |||||||| || |||||||| ||||| Sbjct: 15767 accgtcgagaagtgccaagagctctcaaaacagctcttttacac 15724
>ref|NM_200422.1| Danio rerio zgc:64214 (zgc:64214), mRNA gb|BC054643.1| Danio rerio zgc:64214, mRNA (cDNA clone MGC:64214 IMAGE:6799261), complete cds Length = 2261 Score = 46.1 bits (23), Expect = 0.20 Identities = 23/23 (100%) Strand = Plus / Plus Query: 166 gtccaagctggcgcagctgcagg 188 ||||||||||||||||||||||| Sbjct: 927 gtccaagctggcgcagctgcagg 949
>ref|XM_001170741.1| PREDICTED: Pan troglodytes similar to spliced partial mRNA (LOC747545), mRNA Length = 575 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 622 gttttggtttttctgaaatactatt 646 |||||| |||||||||||||||||| Sbjct: 463 gttttgatttttctgaaatactatt 439
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 316 gcagctcttctacacccgcatcgcc 340 |||||||| |||||||||||||||| Sbjct: 988755 gcagctctcctacacccgcatcgcc 988731
>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence Length = 1395069 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 434 ggcatcgctgcgctgttcggc 454 ||||||||||||||||||||| Sbjct: 1282701 ggcatcgctgcgctgttcggc 1282681
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 202 ggcgacgcggttcgcggccag 222 ||||||||||||||||||||| Sbjct: 3109927 ggcgacgcggttcgcggccag 3109947
>emb|AL954220.1| Pan troglodytes chromosome 22 clone PTB-091C04 map q21.2, complete sequence Length = 241304 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 622 gttttggtttttctgaaatactatt 646 |||||| |||||||||||||||||| Sbjct: 205268 gttttgatttttctgaaatactatt 205292
>emb|AL136369.7| Human DNA sequence from clone RP1-251M9 on chromosome 10 Contains three novel genes, complete sequence Length = 110952 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 catggagaagaacaagcagtt 270 ||||||||||||||||||||| Sbjct: 7956 catggagaagaacaagcagtt 7936
>gb|AC079923.5| Homo sapiens BAC clone RP11-445N10 from 2, complete sequence Length = 121655 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 360 aagcattctggaaggaggtgg 380 ||||||||||||||||||||| Sbjct: 50059 aagcattctggaaggaggtgg 50079
>emb|BX248510.3| Zebrafish DNA sequence from clone DKEY-88P24 in linkage group 10, complete sequence Length = 170386 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 621 agttttggtttttctgaaata 641 ||||||||||||||||||||| Sbjct: 129614 agttttggtttttctgaaata 129634 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 131,754,146 Number of extensions: 7536516 Number of successful extensions: 150520 Number of sequences better than 10.0: 28 Number of HSP's gapped: 150516 Number of HSP's successfully gapped: 38 Length of query: 845 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 823 Effective length of database: 18,508,616,841 Effective search space: 15232591660143 Effective search space used: 15232591660143 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
