| Clone Name | FLbaf166c24 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 208 bits (105), Expect = 2e-50 Identities = 194/223 (86%), Gaps = 3/223 (1%) Strand = Plus / Minus Query: 342 ctcaaatgtatcttgtacagtcgaaaatggttcttttgaagatgtcacacagga---aga 398 ||||||| || ||||||||||| ||||||| ||||||| || | ||||| |||| ||| Sbjct: 17340238 ctcaaatttaacttgtacagtccaaaatggatcttttggaggtatcacagaggatgaaga 17340179 Query: 399 tcagagtagtctatataattttctttatccaagcaaagagctacttccagatgataagga 458 |||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 17340178 acagagtagcctgtacaattttctttatccgagcaaagagctacttcctgatgataagga 17340119 Query: 459 aatgagtatatttgatcatctagaggaacttcgtgcgaggatatttatatctgtattggc 518 |||||||||||||||||||||||||||||||||| ||||||||| | || |||||||| Sbjct: 17340118 gatgagtatatttgatcatctagaggaacttcgtgacaggatatttgtctcagtattggc 17340059 Query: 519 tgttggagcttcaataattggttgttttgctttctccaaagat 561 |||||| ||| | ||| |||||||||| |||| |||||||||| Sbjct: 17340058 tgttggtgctgcgatacttggttgtttcgcttactccaaagat 17340016
>dbj|AP003203.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1080D07 Length = 173856 Score = 208 bits (105), Expect = 2e-50 Identities = 194/223 (86%), Gaps = 3/223 (1%) Strand = Plus / Minus Query: 342 ctcaaatgtatcttgtacagtcgaaaatggttcttttgaagatgtcacacagga---aga 398 ||||||| || ||||||||||| ||||||| ||||||| || | ||||| |||| ||| Sbjct: 106499 ctcaaatttaacttgtacagtccaaaatggatcttttggaggtatcacagaggatgaaga 106440 Query: 399 tcagagtagtctatataattttctttatccaagcaaagagctacttccagatgataagga 458 |||||||| || || |||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 106439 acagagtagcctgtacaattttctttatccgagcaaagagctacttcctgatgataagga 106380 Query: 459 aatgagtatatttgatcatctagaggaacttcgtgcgaggatatttatatctgtattggc 518 |||||||||||||||||||||||||||||||||| ||||||||| | || |||||||| Sbjct: 106379 gatgagtatatttgatcatctagaggaacttcgtgacaggatatttgtctcagtattggc 106320 Query: 519 tgttggagcttcaataattggttgttttgctttctccaaagat 561 |||||| ||| | ||| |||||||||| |||| |||||||||| Sbjct: 106319 tgttggtgctgcgatacttggttgtttcgcttactccaaagat 106277
>ref|NM_001049668.1| Oryza sativa (japonica cultivar-group) Os01g0501700 (Os01g0501700) mRNA, complete cds Length = 1397 Score = 190 bits (96), Expect = 4e-45 Identities = 150/168 (89%) Strand = Plus / Plus Query: 394 gaagatcagagtagtctatataattttctttatccaagcaaagagctacttccagatgat 453 ||||| |||||||| || || |||||||||||||| ||||||||||||||||| |||||| Sbjct: 529 gaagaacagagtagcctgtacaattttctttatccgagcaaagagctacttcctgatgat 588 Query: 454 aaggaaatgagtatatttgatcatctagaggaacttcgtgcgaggatatttatatctgta 513 ||||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||| Sbjct: 589 aaggagatgagtatatttgatcatctagaggaacttcgtgacaggatatttgtctcagta 648 Query: 514 ttggctgttggagcttcaataattggttgttttgctttctccaaagat 561 ||||||||||| ||| | ||| |||||||||| |||| |||||||||| Sbjct: 649 ttggctgttggtgctgcgatacttggttgtttcgcttactccaaagat 696
>dbj|AK067297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104L23, full insert sequence Length = 1401 Score = 190 bits (96), Expect = 4e-45 Identities = 150/168 (89%) Strand = Plus / Plus Query: 394 gaagatcagagtagtctatataattttctttatccaagcaaagagctacttccagatgat 453 ||||| |||||||| || || |||||||||||||| ||||||||||||||||| |||||| Sbjct: 531 gaagaacagagtagcctgtacaattttctttatccgagcaaagagctacttcctgatgat 590 Query: 454 aaggaaatgagtatatttgatcatctagaggaacttcgtgcgaggatatttatatctgta 513 ||||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||| Sbjct: 591 aaggagatgagtatatttgatcatctagaggaacttcgtgacaggatatttgtctcagta 650 Query: 514 ttggctgttggagcttcaataattggttgttttgctttctccaaagat 561 ||||||||||| ||| | ||| |||||||||| |||| |||||||||| Sbjct: 651 ttggctgttggtgctgcgatacttggttgtttcgcttactccaaagat 698
>dbj|AB050885.1| Oryza sativa (japonica cultivar-group) OsTATC mRNA, complete cds Length = 1781 Score = 190 bits (96), Expect = 4e-45 Identities = 150/168 (89%) Strand = Plus / Plus Query: 394 gaagatcagagtagtctatataattttctttatccaagcaaagagctacttccagatgat 453 ||||| |||||||| || || |||||||||||||| ||||||||||||||||| |||||| Sbjct: 861 gaagaacagagtagcctgtacaattttctttatccgagcaaagagctacttcctgatgat 920 Query: 454 aaggaaatgagtatatttgatcatctagaggaacttcgtgcgaggatatttatatctgta 513 ||||| |||||||||||||||||||||||||||||||||| ||||||||| | || ||| Sbjct: 921 aaggagatgagtatatttgatcatctagaggaacttcgtgacaggatatttgtctcagta 980 Query: 514 ttggctgttggagcttcaataattggttgttttgctttctccaaagat 561 ||||||||||| ||| | ||| |||||||||| |||| |||||||||| Sbjct: 981 ttggctgttggtgctgcgatacttggttgtttcgcttactccaaagat 1028
>gb|AF284759.1|AF284759 Pisum sativum TatC (tatC) mRNA, complete cds; nuclear gene for chloroplast product Length = 1352 Score = 58.0 bits (29), Expect = 4e-05 Identities = 53/61 (86%) Strand = Plus / Plus Query: 416 attttctttatccaagcaaagagctacttccagatgataaggaaatgagtatatttgatc 475 ||||||||||||| || |||||||| || || |||||||| || ||||| |||||||||| Sbjct: 473 attttctttatcctagtaaagagcttctacccgatgataaagagatgagcatatttgatc 532 Query: 476 a 476 | Sbjct: 533 a 533
>ref|XM_546528.2| PREDICTED: Canis familiaris similar to SNF1-like kinase 2 (LOC489410), mRNA Length = 4306 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 191 cccgagcccctccactgccgcc 212 |||||||||||||||||||||| Sbjct: 2648 cccgagcccctccactgccgcc 2669
>emb|AL928742.3|CNS08CBF Human chromosome 14 DNA sequence BAC R-731F5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 176237 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 236 gttgaggggagcagcggccaggacac 261 |||||||||||||| ||||||||||| Sbjct: 127206 gttgaggggagcaggggccaggacac 127231
>emb|AL928654.1|CNS08CBD Human chromosome 14 DNA sequence BAC R-521B24 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 211509 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 236 gttgaggggagcagcggccaggacac 261 |||||||||||||| ||||||||||| Sbjct: 208914 gttgaggggagcaggggccaggacac 208889
>ref|XM_001019692.1| Tetrahymena thermophila SB210 hypothetical protein (TTHERM_00136110) mRNA, complete cds Length = 3573 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 405 tagtctatataattttcttta 425 ||||||||||||||||||||| Sbjct: 2972 tagtctatataattttcttta 2952
>gb|AC165344.3| Mus musculus BAC clone RP23-390P7 from chromosome 16, complete sequence Length = 193532 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 495 gaggatatttatatctgtatt 515 ||||||||||||||||||||| Sbjct: 164808 gaggatatttatatctgtatt 164788
>gb|AC125142.4| Mus musculus BAC clone RP24-342G10 from chromosome 12, complete sequence Length = 174908 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 551 tctccaaagatataattaaga 571 ||||||||||||||||||||| Sbjct: 97304 tctccaaagatataattaaga 97324
>gb|AC164109.2| Mus musculus BAC clone RP24-142E9 from chromosome 9, complete sequence Length = 147109 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 ctcccttccccatctgtcctc 183 ||||||||||||||||||||| Sbjct: 27850 ctcccttccccatctgtcctc 27870 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 ctcccttccccatctgtcctc 183 ||||||||||||||||||||| Sbjct: 27905 ctcccttccccatctgtcctc 27925
>gb|AC161419.2| Mus musculus BAC clone RP23-405I13 from chromosome 9, complete sequence Length = 213468 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 ctcccttccccatctgtcctc 183 ||||||||||||||||||||| Sbjct: 31303 ctcccttccccatctgtcctc 31283 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 ctcccttccccatctgtcctc 183 ||||||||||||||||||||| Sbjct: 31358 ctcccttccccatctgtcctc 31338
>dbj|AB110698.1| Oryzias latipes OlGC-R2 gene for guanylyl cyclase, exon 1-25, complete cds Length = 28608 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 ctggctgtagcaagcagaaaa 50 ||||||||||||||||||||| Sbjct: 5084 ctggctgtagcaagcagaaaa 5064
>ref|XM_668438.1| Plasmodium berghei strain ANKA hypothetical protein (PB001094.03.0) partial mRNA Length = 483 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatccaa 430 ||||||||||||||||||||| Sbjct: 54 tatataattttctttatccaa 34
>emb|CR854954.10| Zebrafish DNA sequence from clone DKEY-126J17 in linkage group 21, complete sequence Length = 36529 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 465 tatatttgatcatctagagg 484 |||||||||||||||||||| Sbjct: 10957 tatatttgatcatctagagg 10976
>gb|CP000482.1| Pelobacter propionicus DSM 2379, complete genome Length = 4008000 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 caccacatctcccttcccca 174 |||||||||||||||||||| Sbjct: 2275253 caccacatctcccttcccca 2275272
>gb|CP000469.1| Shewanella sp. ANA-3, complete genome Length = 4972204 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 agaaaattatcggtttatca 64 |||||||||||||||||||| Sbjct: 4536206 agaaaattatcggtttatca 4536225
>dbj|AK243079.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100020A09, full insert sequence Length = 3795 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tcctcctccgtcgccaccac 160 |||||||||||||||||||| Sbjct: 125 tcctcctccgtcgccaccac 144
>emb|CT025910.7| Zebrafish DNA sequence from clone CH73-173M3 in linkage group 21, complete sequence Length = 105261 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tatatttgatcatctagagg 484 |||||||||||||||||||| Sbjct: 34701 tatatttgatcatctagagg 34682
>gb|AC188708.2| Gallus gallus BAC clone CH261-174G4 from chromosome z, complete sequence Length = 193735 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 caccacatctcccttcccca 174 |||||||||||||||||||| Sbjct: 175468 caccacatctcccttcccca 175487
>gb|AC187513.3| Gallus gallus BAC clone CH261-41P9 from chromosome z, complete sequence Length = 197655 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 542 gttttgctttctccaaagatataattaa 569 ||||| ||||||||||||||| |||||| Sbjct: 57153 gttttactttctccaaagatagaattaa 57180
>gb|CP000444.1| Shewanella sp. MR-7, complete genome Length = 4792610 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 agaaaattatcggtttatca 64 |||||||||||||||||||| Sbjct: 393842 agaaaattatcggtttatca 393823
>gb|AC188103.1| Pongo pygmaeus abelii chromosome UNK clone CH276-49H12, complete sequence Length = 186139 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 13291 tatataattttctttatcca 13310
>emb|CT826195.2| Pan troglodytes chromosome X clone CH251-233A04 map Xq28, complete sequence Length = 175995 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 411 atataattttctttatccaa 430 |||||||||||||||||||| Sbjct: 151725 atataattttctttatccaa 151744
>gb|DQ272244.1| Cymbopogon jwarancusa clone CM001 microsatellite sequence Length = 369 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 452 ataaggaaatgagtatattt 471 |||||||||||||||||||| Sbjct: 265 ataaggaaatgagtatattt 284
>gb|AC120416.11| Mus musculus chromosome 1, clone RP24-472N18, complete sequence Length = 199727 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 tatataattttctttatccaagca 433 ||||||||||||||| |||||||| Sbjct: 26472 tatataattttctttttccaagca 26449
>gb|AC150657.1| Pan troglodytes chromosome 8 clone PTB-123K23 map human ortholog p23.1, complete sequence Length = 173624 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 gtctatataattttctttat 426 |||||||||||||||||||| Sbjct: 163115 gtctatataattttctttat 163134
>gb|AC150656.1| Pan troglodytes chromosome 8 clone PTB-026H08 map human ortholog p23.1, complete sequence Length = 155351 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 gtctatataattttctttat 426 |||||||||||||||||||| Sbjct: 148290 gtctatataattttctttat 148309
>gb|AF241726.3| Homo sapiens chromosome X, clones RP5-819E23 and RP1-137P19, Map p11.4, complete sequences Length = 244978 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 117648 tatataattttctttatcca 117629
>gb|AC165137.1| Pan troglodytes chromosome X clone PTB-012N04 map human ortholog p11.4, complete sequence Length = 93431 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 74350 tatataattttctttatcca 74331
>gb|AC115294.5| Mus musculus BAC clone RP23-97A19 from chromosome 3, complete sequence Length = 149451 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 502 tttatatctgtattggctgttgga 525 ||||| |||||||||||||||||| Sbjct: 137999 tttatgtctgtattggctgttgga 138022
>gb|AC124473.2| Mus musculus BAC clone RP24-86K23 from chromosome 3, complete sequence Length = 185436 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 502 tttatatctgtattggctgttgga 525 ||||| |||||||||||||||||| Sbjct: 71680 tttatgtctgtattggctgttgga 71703
>gb|AC006149.3| Homo sapiens PAC clone RP5-1078A23 from 7, complete sequence Length = 72010 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 554 ccaaagatataattaagatt 573 |||||||||||||||||||| Sbjct: 6176 ccaaagatataattaagatt 6195
>gb|AC182257.2| Gallus gallus BAC clone CH261-84F14 from chromosome ul, complete sequence Length = 200594 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 caccacatctcccttcccca 174 |||||||||||||||||||| Sbjct: 192987 caccacatctcccttcccca 192968
>ref|XM_385167.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG04991.1) partial mRNA Length = 1971 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 tcctcctccgtcgccaccac 160 |||||||||||||||||||| Sbjct: 1383 tcctcctccgtcgccaccac 1402
>gb|AC091134.7| Homo sapiens chromosome 17, clone RP11-646F1, complete sequence Length = 156583 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 122828 tatataattttctttatcca 122847
>gb|AC109599.4| Homo sapiens chromosome 16 clone RP11-144N1, complete sequence Length = 166598 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 100 aggagcgctgctctcccgcccgcc 123 |||||||| ||||||||||||||| Sbjct: 93111 aggagcgccgctctcccgcccgcc 93134
>gb|AC158242.4| Pan troglodytes BAC clone CH251-354C10 from chromosome unknown, complete sequence Length = 182200 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 66685 tatataattttctttatcca 66666
>gb|AC105364.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1743A09, complete sequence Length = 146568 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tcctcctccgtcgccaccac 160 |||||||||||||||||||| Sbjct: 37042 tcctcctccgtcgccaccac 37023
>gb|AC011551.3| Homo sapiens chromosome 19 clone LLNLR-276E7, complete sequence Length = 37959 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 16337 tatataattttctttatcca 16318
>gb|AC107926.6| Homo sapiens, clone RP11-381P6, complete sequence Length = 176040 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 147424 tatataattttctttatcca 147443
>gb|AC090774.6| Homo sapiens chromosome 17, clone RP11-344E13, complete sequence Length = 207418 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 128358 tatataattttctttatcca 128377
>gb|AC107462.5| Homo sapiens BAC clone RP11-338B9 from 4, complete sequence Length = 192173 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 cagatgataaggaaatgagt 465 |||||||||||||||||||| Sbjct: 118488 cagatgataaggaaatgagt 118469
>gb|AC079904.31| Homo sapiens 12 BAC RP11-84J24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 197964 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 447 agatgataaggaaatgagtatatt 470 |||||||| ||||||||||||||| Sbjct: 191614 agatgatatggaaatgagtatatt 191637
>gb|AC087279.10| Homo sapiens chromosome 11, clone RP11-559I10, complete sequence Length = 184523 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 83190 tatataattttctttatcca 83171
>gb|AC023078.9| Homo sapiens chromosome 11, clone RP11-583F24, complete sequence Length = 163718 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 115053 tatataattttctttatcca 115072
>gb|AC093817.3| Homo sapiens BAC clone RP11-364P22 from 4, complete sequence Length = 183186 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 44339 tatataattttctttatcca 44320
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 316 cctccaagatccacttgcag 335 |||||||||||||||||||| Sbjct: 26047695 cctccaagatccacttgcag 26047714
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 cctccactgccgccgccggc 218 |||||||||||||||||||| Sbjct: 8720165 cctccactgccgccgccggc 8720184
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tcctcctccgtcgccaccac 160 |||||||||||||||||||| Sbjct: 6356129 tcctcctccgtcgccaccac 6356110
>gb|AC108043.3| Homo sapiens BAC clone RP11-270L13 from 4, complete sequence Length = 138020 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 5650 tatataattttctttatcca 5669
>emb|CR450821.7| Zebrafish DNA sequence from clone CH211-156B7 in linkage group 3, complete sequence Length = 163751 Score = 40.1 bits (20), Expect = 8.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 534 aattggttgttttgctttctccaaagat 561 |||||||||||||| |||||||||||| Sbjct: 146981 aattggttgttttgaattctccaaagat 146954
>emb|AL731550.11| Human DNA sequence from clone RP11-94H3 on chromosome 10 Contains the 5' end of a novel gene, the 3' end of the MBL2 gene for mannose-binding lectin (protein C) 2 soluble (opsonic defect) and a CpG island, complete sequence Length = 102532 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 56935 tatataattttctttatcca 56916
>emb|AL591599.5| Human DNA sequence from clone RP11-519I15 on chromosome 6, complete sequence Length = 46174 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 aggatatttatatctgtatt 515 |||||||||||||||||||| Sbjct: 26909 aggatatttatatctgtatt 26890
>emb|AL441964.4| Human DNA sequence from clone RP11-151G12 on chromosome X Contains a mortality factor 4 like 1 (MORF4L1) pseudogene and a novel pseudogene, complete sequence Length = 92775 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 16643 tatataattttctttatcca 16624
>emb|AL359845.30| Human DNA sequence from clone RP11-41L14 on chromosome X tight junction protein 4 (peripheral) (TJP4) pseudogene, complete sequence Length = 122272 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 58635 tatataattttctttatcca 58654
>emb|AL356308.16| Human DNA sequence from clone RP11-475L16 on chromosome 10 Contains the 5' end of the gene for VPS10 domain receptor protein SORCS 1 and a CpG island, complete sequence Length = 102910 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 22459 tatataattttctttatcca 22440
>emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on chromosome 6q12, complete sequence Length = 158204 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 atataattttctttatccaa 430 |||||||||||||||||||| Sbjct: 61154 atataattttctttatccaa 61135
>emb|AL031347.1|HS596H12 Human DNA sequence from clone RP4-596H12 on chromosome 6p22.2-22.3, complete sequence Length = 175555 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 400 cagagtagtctatataattt 419 |||||||||||||||||||| Sbjct: 34260 cagagtagtctatataattt 34241
>emb|AL022401.2|HS93L7 Human DNA sequence from clone RP1-93L7 on chromosome Xq21 Contains a novel pseudogene similar to RIKEN cDNA 6330577E15Rik, a pseudogene similar to ring finger protein 34 (RNF34) and the 3' end of the CHM gene for choroideremia (Rab escort protein 1), complete sequence Length = 206784 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 15571 tatataattttctttatcca 15590
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 tctatataattttctttatc 427 |||||||||||||||||||| Sbjct: 1094362 tctatataattttctttatc 1094343
>gb|AC008641.7| Homo sapiens chromosome 5 clone CTB-17P3, complete sequence Length = 176629 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gcccgccaccgcaactcggc 136 |||||||||||||||||||| Sbjct: 90549 gcccgccaccgcaactcggc 90568
>gb|AC021842.7|AC021842 Homo sapiens chromosome 8, clone RP11-472N16, complete sequence Length = 190044 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 90800 tatataattttctttatcca 90819
>gb|AC066611.6|AC066611 Homo sapiens chromosome 15 clone RP11-348P16 map 15q21.3, complete sequence Length = 184355 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 447 agatgataaggaaatgagtatatt 470 |||||||| ||||||||||||||| Sbjct: 174366 agatgatatggaaatgagtatatt 174343
>gb|AC008666.5|AC008666 Homo sapiens chromosome 5 clone CTB-35A8, complete sequence Length = 99108 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 gcccgccaccgcaactcggc 136 |||||||||||||||||||| Sbjct: 8354 gcccgccaccgcaactcggc 8335
>gb|AC007404.4| Homo sapiens BAC clone RP11-547I5 from 2, complete sequence Length = 168506 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 tcccttccccatctgtcctcatgc 187 ||||||||| |||||||||||||| Sbjct: 87218 tcccttccctatctgtcctcatgc 87195
>dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039C01 Length = 151054 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 cctccactgccgccgccggc 218 |||||||||||||||||||| Sbjct: 78806 cctccactgccgccgccggc 78825
>gb|AC087897.32| Homo sapiens 12 BAC RP11-804F13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181166 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 540 ttgttttgctttctccaaagatat 563 ||||||||||| |||||||||||| Sbjct: 160442 ttgttttgcttgctccaaagatat 160419
>gb|AC121758.14| Homo sapiens 12 BAC RP11-74M13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 130479 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 40362 tatataattttctttatcca 40343
>gb|AC150565.1| Pan troglodytes chromosome X clone RP43-009M14 map human ortholog p11.4, complete sequence Length = 160315 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 3161 tatataattttctttatcca 3142
>dbj|AP005255.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0087F05 Length = 143908 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 cctccactgccgccgccggc 218 |||||||||||||||||||| Sbjct: 133905 cctccactgccgccgccggc 133924
>gb|AC106858.12| Homo sapiens chromosome 17, clone RP11-347L15, complete sequence Length = 160484 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tctccaaagatataattaag 570 |||||||||||||||||||| Sbjct: 126726 tctccaaagatataattaag 126707
>gb|AC131055.10| Homo sapiens chromosome 17, clone RP11-846F4, complete sequence Length = 187223 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 138174 tatataattttctttatcca 138193
>gb|AC107940.13| Homo sapiens chromosome 17, clone RP11-158C19, complete sequence Length = 164186 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 109697 tatataattttctttatcca 109678
>gb|AC132825.8| Homo sapiens chromosome 8, clone RP13-929K23, complete sequence Length = 137261 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 123882 tatataattttctttatcca 123863
>gb|AC175366.1| Pan troglodytes chromosome X clone CH251-499L9 map human ortholog p11.4, complete sequence Length = 217335 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 170494 tatataattttctttatcca 170475
>gb|AC154455.2| Mus musculus BAC clone RP23-185H13 from 14, complete sequence Length = 215308 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 tcccttccccatctgtcctc 183 |||||||||||||||||||| Sbjct: 132745 tcccttccccatctgtcctc 132764
>gb|AC113456.9| Mus musculus chromosome 1, clone RP23-257E16, complete sequence Length = 174902 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 tatataattttctttatccaagca 433 ||||||||||||||| |||||||| Sbjct: 97262 tatataattttctttttccaagca 97285
>gb|AC005553.1|AC005553 Homo sapiens chromosome 17, clone hRPK.112_J_9, complete sequence Length = 179651 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 tctccaaagatataattaag 570 |||||||||||||||||||| Sbjct: 28282 tctccaaagatataattaag 28263
>emb|AL713940.4|CNS07YPM Oryza sativa chromosome 12, . BAC OJ1327_A12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161806 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 cctccaagatccacttgcag 335 |||||||||||||||||||| Sbjct: 63976 cctccaagatccacttgcag 63957
>gb|AC132822.3| Homo sapiens chromosome 17, clone RP13-885L6, complete sequence Length = 133778 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 tatataattttctttatcca 429 |||||||||||||||||||| Sbjct: 113556 tatataattttctttatcca 113537 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 111,517,417 Number of extensions: 6258435 Number of successful extensions: 170365 Number of sequences better than 10.0: 83 Number of HSP's gapped: 170363 Number of HSP's successfully gapped: 85 Length of query: 597 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 575 Effective length of database: 18,508,616,841 Effective search space: 10642454683575 Effective search space used: 10642454683575 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)