ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf169c16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q7S6J4:HSE1_NEUCR Class E vacuolar protein-sorting machinery pro... 34 0.48
2Q98EC1:OMP19_RHILO Outer membrane lipoprotein omp19 homolog prec... 32 1.8
3Q566M8:RN150_DANRE RING finger protein 150 precursor - Danio rer... 31 3.1
4P47876:IBP1_MOUSE Insulin-like growth factor-binding protein 1 p... 31 4.1
5O35923:BRCA2_RAT Breast cancer type 2 susceptibility protein hom... 30 5.3
6O35468:WNT9B_MOUSE Protein Wnt-9b precursor - Mus musculus (Mouse) 30 7.0
7Q49LS4:XKR4_PANTR XK-related protein 4 - Pan troglodytes (Chimpa... 30 9.1
8Q27974:AUXI_BOVIN Putative tyrosine-protein phosphatase auxilin ... 30 9.1

>Q7S6J4:HSE1_NEUCR Class E vacuolar protein-sorting machinery protein hse-1 -|
           Neurospora crassa
          Length = 745
 Score = 33.9 bits (76), Expect = 0.48
 Identities = 21/46 (45%), Positives = 24/46 (52%)
 Frame = -2

Query: 184 SPGAPSSRRPGLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASGA 47
           SPGA SS   G AP PPSG       P+G +  +PS    P A GA
Sbjct: 606 SPGAGSSNNVGSAPPPPSG-----PAPSGPAPSAPSAPSAPSAPGA 646



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>Q98EC1:OMP19_RHILO Outer membrane lipoprotein omp19 homolog precursor - Rhizobium loti|
           (Mesorhizobium loti)
          Length = 179

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = -2

Query: 181 PGAPSSRRPGLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCAVVSGR 23
           P +P S  P   P  P+ T VA   P G +    S       +G W A VSG+
Sbjct: 53  PASPGSTDPSKFPTAPANTQVASLPPDGQAPAGASDLSAAAVAGVWNASVSGQ 105



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>Q566M8:RN150_DANRE RING finger protein 150 precursor - Danio rerio (Zebrafish)|
           (Brachydanio rerio)
          Length = 419

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -2

Query: 142 RPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCAVVS 29
           R   G L     P     C PSG   P A GAW A++S
Sbjct: 73  REARGVLAMPAAPHDRHACDPSGRFTPRAHGAWIALIS 110



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>P47876:IBP1_MOUSE Insulin-like growth factor-binding protein 1 precursor - Mus|
           musculus (Mouse)
          Length = 272

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 187 CSPGAPSSRRPGLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCAVVSGR 23
           C+P   ++ R GL P  P+ +   +  PAGC CC        L  GA C V + R
Sbjct: 32  CAPC--TAERLGLCPPVPA-SCPEISRPAGCGCCPTCA----LPMGAACGVATAR 79



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>O35923:BRCA2_RAT Breast cancer type 2 susceptibility protein homolog - Rattus|
            norvegicus (Rat)
          Length = 3343

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 14/68 (20%)
 Frame = -2

Query: 190  WCSPGAPSSRRP--------------GLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLAS 53
            W +P    +R P              G  PR       +   P   SCC+P+G   PLA 
Sbjct: 3118 WSTPNKDPTREPYPASTCSASDLASGGQLPRSSPTDQQSYRSPL--SCCTPTGKSTPLAH 3175

Query: 52   GAWCAVVS 29
             AW A  S
Sbjct: 3176 SAWMAAKS 3183



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>O35468:WNT9B_MOUSE Protein Wnt-9b precursor - Mus musculus (Mouse)|
          Length = 359

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 22/53 (41%), Positives = 27/53 (50%)
 Frame = -2

Query: 196 WIWCSPGAPSSRRPGLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCA 38
           W    PG P+    GLAPRP  G LV +E+    S C PS Y  P  +G  C+
Sbjct: 264 WAPAKPGGPAK---GLAPRP--GDLVYMEDSP--SFCRPSKY-SPGTAGRVCS 308



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>Q49LS4:XKR4_PANTR XK-related protein 4 - Pan troglodytes (Chimpanzee)|
          Length = 650

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 19/51 (37%), Positives = 21/51 (41%)
 Frame = -2

Query: 154 GLAPRPPSGTLVAVEEPAGCSCCSPSGYVRPLASGAWCAVVSGRRDSAVMG 2
           GLAP  PSG+    EE AG  CC   G          C   +G   SA  G
Sbjct: 33  GLAPGLPSGSGAEDEEAAGGGCCPDGG-----GCSRCCCCCAGSGSSAGSG 78



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>Q27974:AUXI_BOVIN Putative tyrosine-protein phosphatase auxilin - Bos taurus (Bovine)|
          Length = 910

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 508 YTPIITHDEVHEYRTGHG--YMNISHTHTGRQVLIMYHLRST 389
           YT     + + EYR   G  ++ +S T  G  V+ MYHLRST
Sbjct: 262 YTTCADFERMKEYRVQDGKIFIPLSITVQGDVVVSMYHLRST 303


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 98,742,420
Number of extensions: 2058165
Number of successful extensions: 5822
Number of sequences better than 10.0: 8
Number of HSP's gapped: 5817
Number of HSP's successfully gapped: 8
Length of query: 205
Length of database: 100,686,439
Length adjustment: 108
Effective length of query: 97
Effective length of database: 71,062,579
Effective search space: 6893070163
Effective search space used: 6893070163
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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