>P49353:FPPS_MAIZE Farnesyl pyrophosphate synthetase - Zea mays (Maize)|
          Length = 350
 Score = 67.0 bits (162), Expect = 9e-11
 Identities = 29/42 (69%), Positives = 36/42 (85%)
 Frame = +2

Query: 473 NGSGGDSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRVM 598
           NG+GGD++A FA IY  LKEE+L DPAFEFT+ES QWIDR++
Sbjct: 6   NGAGGDTRAAFARIYKTLKEELLTDPAFEFTEESRQWIDRMV 47

>P49350:FPPS_ARTAN Farnesyl pyrophosphate synthetase - Artemisia annua (Sweet|
           wormwood)
          Length = 343

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 19/40 (47%), Positives = 30/40 (75%)
 Frame = +2

Query: 479 SGGDSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRVM 598
           S  D K++F ++Y  LK E++ DPAFEF D+S QWI++++
Sbjct: 2   SSTDLKSKFLKVYDTLKSELINDPAFEFDDDSRQWIEKML 41

>P49352:FPPS2_LUPAL Farnesyl pyrophosphate synthetase 2 - Lupinus albus (White lupin)|
          Length = 342

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 19/37 (51%), Positives = 29/37 (78%)
 Frame = +2

Query: 488 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRVM 598
           D K+ F  +YS LK E+L+DPAFEF+ +S QW++R++
Sbjct: 3   DPKSSFLNVYSILKSELLQDPAFEFSTDSRQWVERML 39

>Q43315:FPPS2_ARATH Farnesyl pyrophosphate synthetase 2 - Arabidopsis thaliana|
           (Mouse-ear cress)
          Length = 342

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 19/37 (51%), Positives = 30/37 (81%)
 Frame = +2

Query: 488 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRVM 598
           D K+ F ++YS LK ++L+DP+FEFT ES QW++R++
Sbjct: 3   DLKSTFLDVYSVLKSDLLQDPSFEFTHESRQWLERML 39

>O24241:FPPS1_PARAR Farnesyl pyrophosphate synthetase 1 - Parthenium argentatum|
           (Guayule rubber plant)
          Length = 342

 Score = 48.1 bits (113), Expect = 4e-05
 Identities = 17/37 (45%), Positives = 28/37 (75%)
 Frame = +2

Query: 488 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRVM 598
           D K+ F ++Y  LK E++ DPAFEF D+S QW+++++
Sbjct: 4   DLKSRFLQVYDTLKSELINDPAFEFDDDSRQWVEKML 40

>O24242:FPPS2_PARAR Farnesyl pyrophosphate synthetase 2 - Parthenium argentatum|
           (Guayule rubber plant)
          Length = 342

 Score = 47.8 bits (112), Expect = 6e-05
 Identities = 17/37 (45%), Positives = 29/37 (78%)
 Frame = +2

Query: 488 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRVM 598
           D +++F ++Y  LK E++ DPAFEF D+S QWI++++
Sbjct: 4   DIRSKFLQVYDTLKSELINDPAFEFDDDSRQWIEKML 40

>P49351:FPPS1_LUPAL Farnesyl pyrophosphate synthetase 1 - Lupinus albus (White lupin)|
          Length = 342

 Score = 47.8 bits (112), Expect = 6e-05
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +2

Query: 488 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRVM 598
           D ++ F  +YS LK E+L DPAFEF+ +S QW+DR++
Sbjct: 3   DLRSTFLNVYSVLKSELLHDPAFEFSPDSRQWLDRML 39

>Q09152:FPPS1_ARATH Farnesyl pyrophosphate synthetase 1, mitochondrial precursor -|
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 384

 Score = 47.8 bits (112), Expect = 6e-05
 Identities = 19/37 (51%), Positives = 28/37 (75%)
 Frame = +2

Query: 488 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRVM 598
           D K+ F  +YS LK ++L DP+FEFT+ES  W+DR++
Sbjct: 45  DLKSTFLNVYSVLKSDLLHDPSFEFTNESRLWVDRML 81

>O64905:FPPS_HELAN Farnesyl pyrophosphate synthetase - Helianthus annuus (Common|
           sunflower)
          Length = 341

 Score = 47.4 bits (111), Expect = 8e-05
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = +2

Query: 488 DSKAEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRVM 598
           D K++F  +Y  LK E+L DPAFEF  +S QWID+++
Sbjct: 4   DLKSKFLHVYQTLKSELLNDPAFEFHHDSRQWIDKML 40

>P0C565:CPPAS_TANCI Chrysanthemyl diphosphate synthase, chloroplast precursor -|
           Tanacetum cinerariifolium (Dalmatian daisy)
           (Chrysanthemum cinerariifolium)
          Length = 395

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 15/34 (44%), Positives = 27/34 (79%)
 Frame = +2

Query: 497 AEFAEIYSRLKEEMLEDPAFEFTDESLQWIDRVM 598
           ++F ++Y  LK E++ DP+FEF D+S QW++R++
Sbjct: 60  SQFMQVYETLKSELIHDPSFEFDDDSRQWVERMI 93

>P24054:SPRL1_RAT SPARC-like protein 1 precursor - Rattus norvegicus (Rat)|
          Length = 634

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -2

Query: 384 GEEDEKQGAL--YCTPWTEFLWGKQISGHAFYLRTGDATEIRDGDTRGSDAGKGAGLPRL 211
           G +D K GA   Y  P  EFL  +++   ++YL+ G+ T   D     S+AG   G    
Sbjct: 324 GGDDSKHGASDDYFIPSQEFLEAERMHSLSYYLKYGEETP--DESENRSEAGDNQG---- 377

Query: 210 AQAREGSPRRVRSTCSEPLDQ 148
           A+  E SP       +EP D+
Sbjct: 378 AKKAESSPN------AEPSDE 392

>Q5FU33:GPMI_GLUOX 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -|
           Gluconobacter oxydans (Gluconobacter suboxydans)
          Length = 510

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 12/75 (16%)
 Frame = -2

Query: 378 EDEKQGA--LYCTPWTEFLWGKQISGHAFYLRTGDATEIRDGDTRGSDAGK---GAG--- 223
           EDE   A  L  TP  + LW    S HAF   +G+   + DG    S+ G    GAG   
Sbjct: 22  EDESDNAVRLANTPTFDTLWAT--SPHAFLKTSGEDVGLPDGQMGNSEVGHLNIGAGRVV 79

Query: 222 ---LPRLAQ-AREGS 190
              LPR+++ AR+GS
Sbjct: 80  MQELPRISRSARDGS 94

>P97273:TITF1_CAVPO Thyroid transcription factor 1 - Cavia porcellus (Guinea pig)|
          Length = 112

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 258 DTRGSDAGKGAGLPRLAQAREGSPRRV 178
           D+ G   G GAG P+  QA++ SPRRV
Sbjct: 72  DSGGGGGGGGAGCPQQQQAQQQSPRRV 98

>P43698:TITF1_CANFA Thyroid transcription factor 1 - Canis familiaris (Dog)|
          Length = 371

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 258 DTRGSDAGKGAGLPRLAQAREGSPRRV 178
           D+ G   G GAG P+  QA++ SPRRV
Sbjct: 232 DSGGGGGGGGAGCPQQQQAQQQSPRRV 258

>Q9TV66:HCN4_RABIT Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated|
            channel 4 - Oryctolagus cuniculus (Rabbit)
          Length = 1175

 Score = 31.2 bits (69), Expect = 5.7
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = +2

Query: 116  PFSRGKTVNVH*SNGSEHVDLTRRGDPSRACASRGRPAPFPASLPRVSPSRISVASP 286
            PF+ G       S G+  V  + RG PS    S G P  FP++ PR S S  S+  P
Sbjct: 986  PFAAGA------SAGASPVAFSPRGGPSPPGHSPGTPRTFPSAPPRASGSHGSLLLP 1036

>Q1DFW5:FTHS_MYXXD Formate--tetrahydrofolate ligase - Myxococcus xanthus (strain DK|
           1622)
          Length = 551

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -2

Query: 324 GKQISGHAFYLRTGDATEIRDGDTRGSDAG--KGAGLPRLAQAREGSPRRVRS 172
           G+ I GH    R G     RD D   S     K A +P LAQ REG P  V +
Sbjct: 209 GRVIIGHT---RDGQPVRARDVDAAASMVALLKDALMPNLAQTREGGPALVHA 258

>Q09602:YRM6_CAEEL Uncharacterized homeobox protein R06F6.6 - Caenorhabditis elegans|
          Length = 416

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 155 NGSEHVDLTRRGDPSRACASRGRPAPFPASLPRVSPSRISVASP 286
           N S H   +RR  PSR  +S   P P  A+   + P++I  ASP
Sbjct: 193 NASNHTSNSRRSSPSRKSSSDSTPTPTQATQFDM-PTQIQTASP 235

>P15979:HA1F_CHICK Class I histocompatibility antigen, F10 alpha chain precursor -|
           Gallus gallus (Chicken)
          Length = 345

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
 Frame = -2

Query: 330 LWGKQISG--------HAFYLRTGDATEIRDGDTRGSDAGKGAGLP 217
           +WGK+  G        H FY R    + ++DG  RG DA  G  +P
Sbjct: 208 VWGKEADGILTLSCRAHGFYPRPIVVSWLKDGAVRGQDAHSGGIVP 253

>Q8KWT6:BACA2_BACSU Bacilysin biosynthesis protein bacA - Bacillus subtilis|
          Length = 204

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 548 PAFEFTDESLQWIDRVMPPPPFHLSIYFWECGCWFDLVSE*TA 676
           P FE+TD+ L     V  P P +L  YF      FDLV+  +A
Sbjct: 112 PGFEYTDDMLDKAVIVSHPSPINLIKYFTRKDVTFDLVNSTSA 154


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 141,456,284
Number of extensions: 3094153
Number of successful extensions: 8907
Number of sequences better than 10.0: 19
Number of HSP's gapped: 8891
Number of HSP's successfully gapped: 19
Length of query: 290
Length of database: 100,686,439
Length adjustment: 112
Effective length of query: 178
Effective length of database: 69,965,399
Effective search space: 12453841022
Effective search space used: 12453841022
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)