ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf169b22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009271.1| Triticum aestivum clone wlk8.pk0009.f9:fis, full insert mRNA sequence Length = 1301 Score = 244 bits (123), Expect = 4e-61 Identities = 126/127 (99%) Strand = Plus / Plus Query: 462 tggcgttgtcgaacggctccggtggcgactccaaggccgagttcgcggaaatatacagca 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 tggcgttgtcgaacggctccggtggcgactccaaggccgagttcgcggaaatatacagca 124 Query: 522 ggctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagt 581 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 125 ggctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtcgctccagt 184 Query: 582 ggatcga 588 ||||||| Sbjct: 185 ggatcga 191 Score = 71.9 bits (36), Expect = 4e-09 Identities = 36/36 (100%) Strand = Plus / Plus Query: 406 ctccgctccttctcgtcccttctcgctcgcgtgcgc 441 |||||||||||||||||||||||||||||||||||| Sbjct: 1 ctccgctccttctcgtcccttctcgctcgcgtgcgc 36
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 186 bits (94), Expect = 9e-44 Identities = 106/110 (96%) Strand = Plus / Plus Query: 490 ctccaaggccgagttcgcggaaatatacagcaggctcaaggaggagatgctcgaggaccc 549 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 29151688 ctccaaggccgcgttcgcggagatatacagcaggctcaaggaggagatgctcgaggaccc 29151747 Query: 550 cgccttcgagttcaccgacgagtccctccagtggatcgaccgcgtaatgc 599 ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 29151748 ggccttcgagttcaccgacgagtcgctccagtggatcgaccgcgtaatgc 29151797 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 catctcccgtccttaaataaa 299 ||||||||||||||||||||| Sbjct: 29151477 catctcccgtccttaaataaa 29151497
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 186 bits (94), Expect = 9e-44 Identities = 106/110 (96%) Strand = Plus / Plus Query: 490 ctccaaggccgagttcgcggaaatatacagcaggctcaaggaggagatgctcgaggaccc 549 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 112054 ctccaaggccgcgttcgcggagatatacagcaggctcaaggaggagatgctcgaggaccc 112113 Query: 550 cgccttcgagttcaccgacgagtccctccagtggatcgaccgcgtaatgc 599 ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 112114 ggccttcgagttcaccgacgagtcgctccagtggatcgaccgcgtaatgc 112163 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 catctcccgtccttaaataaa 299 ||||||||||||||||||||| Sbjct: 111843 catctcccgtccttaaataaa 111863
>dbj|AB021747.1| Oryza sativa (japonica cultivar-group) FPPS1 gene for farnesyl diphosphate synthase, complete cds Length = 7423 Score = 186 bits (94), Expect = 9e-44 Identities = 106/110 (96%) Strand = Plus / Plus Query: 490 ctccaaggccgagttcgcggaaatatacagcaggctcaaggaggagatgctcgaggaccc 549 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1991 ctccaaggccgcgttcgcggagatatacagcaggctcaaggaggagatgctcgaggaccc 2050 Query: 550 cgccttcgagttcaccgacgagtccctccagtggatcgaccgcgtaatgc 599 ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 2051 ggccttcgagttcaccgacgagtcgctccagtggatcgaccgcgtaatgc 2100 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 catctcccgtccttaaataaa 299 ||||||||||||||||||||| Sbjct: 1780 catctcccgtccttaaataaa 1800
>emb|CT830122.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA130I20, full insert sequence Length = 1439 Score = 172 bits (87), Expect = 1e-39 Identities = 99/103 (96%) Strand = Plus / Plus Query: 490 ctccaaggccgagttcgcggaaatatacagcaggctcaaggaggagatgctcgaggaccc 549 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 165 ctccaaggccgcgttcgcggagatatacagcaggctcaaggaggagatgctcgaggaccc 224 Query: 550 cgccttcgagttcaccgacgagtccctccagtggatcgaccgc 592 ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 225 ggccttcgagttcaccgacgagtcgctccagtggatcgaccgc 267
>ref|NM_001050535.1| Oryza sativa (japonica cultivar-group) Os01g0703400 (Os01g0703400) mRNA, complete cds Length = 1332 Score = 172 bits (87), Expect = 1e-39 Identities = 99/103 (96%) Strand = Plus / Plus Query: 490 ctccaaggccgagttcgcggaaatatacagcaggctcaaggaggagatgctcgaggaccc 549 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 126 ctccaaggccgcgttcgcggagatatacagcaggctcaaggaggagatgctcgaggaccc 185 Query: 550 cgccttcgagttcaccgacgagtccctccagtggatcgaccgc 592 ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 186 ggccttcgagttcaccgacgagtcgctccagtggatcgaccgc 228
>dbj|AK061657.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-D06, full insert sequence Length = 1332 Score = 172 bits (87), Expect = 1e-39 Identities = 99/103 (96%) Strand = Plus / Plus Query: 490 ctccaaggccgagttcgcggaaatatacagcaggctcaaggaggagatgctcgaggaccc 549 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 126 ctccaaggccgcgttcgcggagatatacagcaggctcaaggaggagatgctcgaggaccc 185 Query: 550 cgccttcgagttcaccgacgagtccctccagtggatcgaccgc 592 ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 186 ggccttcgagttcaccgacgagtcgctccagtggatcgaccgc 228
>dbj|D85317.1| Oryza sativa (japonica cultivar-group) mRNA for farnesyl pyrophosphate synthase, complete cds Length = 1289 Score = 172 bits (87), Expect = 1e-39 Identities = 99/103 (96%) Strand = Plus / Plus Query: 490 ctccaaggccgagttcgcggaaatatacagcaggctcaaggaggagatgctcgaggaccc 549 ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 83 ctccaaggccgcgttcgcggagatatacagcaggctcaaggaggagatgctcgaggaccc 142 Query: 550 cgccttcgagttcaccgacgagtccctccagtggatcgaccgc 592 ||||||||||||||||||||||| |||||||||||||||||| Sbjct: 143 ggccttcgagttcaccgacgagtcgctccagtggatcgaccgc 185
>gb|AY110411.1| Zea mays CL242_1 mRNA sequence Length = 2504 Score = 121 bits (61), Expect = 4e-24 Identities = 76/81 (93%) Strand = Plus / Plus Query: 512 atatacagcaggctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgag 571 |||||||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||| Sbjct: 178 atatacagcaagctcaagcaggagatgctcgaggaccccgccttcgaattcactgacgag 237 Query: 572 tccctccagtggatcgaccgc 592 || |||||||||||||||||| Sbjct: 238 tcgctccagtggatcgaccgc 258
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 81.8 bits (41), Expect = 4e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||||| Sbjct: 44685 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 44626 Query: 583 gatcgaccgcgtaatgc 599 |||||| |||||||||| Sbjct: 44625 gatcgatcgcgtaatgc 44609
>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08, complete sequence Length = 115026 Score = 81.8 bits (41), Expect = 4e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||||| Sbjct: 986 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 927 Query: 583 gatcgaccgcgtaatgc 599 |||||| |||||||||| Sbjct: 926 gatcgatcgcgtaatgc 910
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 81.8 bits (41), Expect = 4e-12 Identities = 68/77 (88%) Strand = Plus / Minus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||||| Sbjct: 26762746 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 26762687 Query: 583 gatcgaccgcgtaatgc 599 |||||| |||||||||| Sbjct: 26762686 gatcgatcgcgtaatgc 26762670 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgagccggcgaggg 46 ||||||||||||||||||||||| Sbjct: 2083748 cggcggcggcgagccggcgaggg 2083770 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 ggcggcggcgagccggcgaggg 46 |||||||||||||||||||||| Sbjct: 22349735 ggcggcggcgagccggcgaggg 22349714 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 22 gtcggcggcggcgagccggcga 43 |||||||||||||||||||||| Sbjct: 29065051 gtcggcggcggcgagccggcga 29065072
>gb|AF111710.1|AF111710 Oryza sativa subsp. indica putative dnaJ-like protein, putative myb-related protein, putative farnesyl pyrophosphate synthase, and hypothetical protein genes, complete cds Length = 43422 Score = 81.8 bits (41), Expect = 4e-12 Identities = 68/77 (88%) Strand = Plus / Plus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||||| Sbjct: 31530 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 31589 Query: 583 gatcgaccgcgtaatgc 599 |||||| |||||||||| Sbjct: 31590 gatcgatcgcgtaatgc 31606
>gb|BT016427.1| Zea mays clone Contig260 mRNA sequence Length = 1469 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | |||||| Sbjct: 206 gctcaaggaggagctgctcaccgacccggccttcgagttcaccgaggagtcacgccagtg 265 Query: 583 gatcgaccgc 592 |||||||||| Sbjct: 266 gatcgaccgc 275
>gb|AF330037.1| Zea mays truncated geranylgeranyl-diphosphate synthase mRNA, partial cds Length = 1250 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | |||||| Sbjct: 39 gctcaaggaggagctgctcaccgacccggccttcgagttcaccgaggagtcacgccagtg 98 Query: 583 gatcgaccgc 592 |||||||||| Sbjct: 99 gatcgaccgc 108
>gb|AF330036.1| Zea mays geranylgeranyl-diphosphate synthase mRNA, complete cds Length = 1399 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | |||||| Sbjct: 188 gctcaaggaggagctgctcaccgacccggccttcgagttcaccgaggagtcacgccagtg 247 Query: 583 gatcgaccgc 592 |||||||||| Sbjct: 248 gatcgaccgc 257
>gb|AY108110.1| Zea mays PCO074380 mRNA sequence Length = 1453 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | |||||| Sbjct: 188 gctcaaggaggagctgctcaccgacccggccttcgagttcaccgaggagtcacgccagtg 247 Query: 583 gatcgaccgc 592 |||||||||| Sbjct: 248 gatcgaccgc 257
>gb|L39789.1|MZEFPS Zea mays farnesyl pyrophosphate synthetase (fps) mRNA, complete cds Length = 1378 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||| ||||||||||||||||| ||||| | |||||| Sbjct: 162 gctcaaggaggagctgctcaccgacccggccttcgagttcaccgaggagtcacgccagtg 221 Query: 583 gatcgaccgc 592 |||||||||| Sbjct: 222 gatcgaccgc 231
>ref|NM_001062739.1| Oryza sativa (japonica cultivar-group) Os05g0543400 (Os05g0543400) mRNA, complete cds Length = 1451 Score = 67.9 bits (34), Expect = 6e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||||| Sbjct: 357 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 416 Query: 583 gatcga 588 |||||| Sbjct: 417 gatcga 422
>dbj|AK100273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072A14, full insert sequence Length = 1452 Score = 67.9 bits (34), Expect = 6e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||||| Sbjct: 286 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 345 Query: 583 gatcga 588 |||||| Sbjct: 346 gatcga 351
>dbj|AK073822.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069I20, full insert sequence Length = 1452 Score = 67.9 bits (34), Expect = 6e-08 Identities = 58/66 (87%) Strand = Plus / Plus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||||||||||||||||||||||||| ||| | ||||| Sbjct: 358 gctcaaggaggagctgctcagggaccccgccttcgagttcaccgactcgtcgcggcagtg 417 Query: 583 gatcga 588 |||||| Sbjct: 418 gatcga 423
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 50.1 bits (25), Expect = 0.013 Identities = 66/77 (85%), Gaps = 2/77 (2%) Strand = Plus / Plus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||| | ||||| ||||| |||||| | |||| |||||| Sbjct: 75638 gctcaaggaggagctgctcagggatcacgcctccgagtacaccgagta-tccc-ccagtg 75695 Query: 583 gatcgaccgcgtaatgc 599 ||||||||||||||||| Sbjct: 75696 gatcgaccgcgtaatgc 75712 Score = 50.1 bits (25), Expect = 0.013 Identities = 66/77 (85%), Gaps = 2/77 (2%) Strand = Plus / Plus Query: 523 gctcaaggaggagatgctcgaggaccccgccttcgagttcaccgacgagtccctccagtg 582 ||||||||||||| ||||| ||| | ||||| ||||| |||||| | |||| |||||| Sbjct: 115351 gctcaaggaggagctgctcagggatcacgcctccgagtacaccgagta-tccc-ccagtg 115408 Query: 583 gatcgaccgcgtaatgc 599 ||||||||||||||||| Sbjct: 115409 gatcgaccgcgtaatgc 115425
>gb|AC159228.2| Mus musculus BAC clone RP24-338I14 from chromosome 13, complete sequence Length = 158726 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Plus Query: 609 ccttccatctctctatatatttct 632 |||||||||||||||||||||||| Sbjct: 3852 ccttccatctctctatatatttct 3875
>gb|AC173481.1| Mus musculus BAC clone RP23-411A24 from chromosome 13, complete sequence Length = 203948 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Minus Query: 609 ccttccatctctctatatatttct 632 |||||||||||||||||||||||| Sbjct: 112112 ccttccatctctctatatatttct 112089
>ref|NM_001061116.1| Oryza sativa (japonica cultivar-group) Os05g0136900 (Os05g0136900) mRNA, complete cds Length = 1728 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgagccggcgaggg 46 ||||||||||||||||||||||| Sbjct: 251 cggcggcggcgagccggcgaggg 273
>ref|NM_001061115.1| Oryza sativa (japonica cultivar-group) Os05g0136800 (Os05g0136800) mRNA, complete cds Length = 867 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 24 cggcggcggcgagccggcgaggg 46 ||||||||||||||||||||||| Sbjct: 515 cggcggcggcgagccggcgaggg 493
>dbj|AK106972.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-G06, full insert sequence Length = 867 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 24 cggcggcggcgagccggcgaggg 46 ||||||||||||||||||||||| Sbjct: 515 cggcggcggcgagccggcgaggg 493
>dbj|AK069868.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039O14, full insert sequence Length = 1730 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgagccggcgaggg 46 ||||||||||||||||||||||| Sbjct: 253 cggcggcggcgagccggcgaggg 275
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08, complete sequence Length = 112268 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgagccggcgaggg 46 ||||||||||||||||||||||| Sbjct: 50589 cggcggcggcgagccggcgaggg 50611
>ref|NM_001067876.1| Oryza sativa (japonica cultivar-group) Os08g0242400 (Os08g0242400) mRNA, complete cds Length = 1247 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgagccggcgagg 45 |||||||||||||||||||||| Sbjct: 281 cggcggcggcgagccggcgagg 302
>ref|NM_001063007.1| Oryza sativa (japonica cultivar-group) Os05g0587700 (Os05g0587700) mRNA, complete cds Length = 1980 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Minus Query: 22 gtcggcggcggcgagccggcga 43 |||||||||||||||||||||| Sbjct: 1372 gtcggcggcggcgagccggcga 1351
>ref|NM_001062278.1| Oryza sativa (japonica cultivar-group) Os05g0458100 (Os05g0458100) mRNA, complete cds Length = 1010 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 ggcggcggcgagccggcgaggg 46 |||||||||||||||||||||| Sbjct: 112 ggcggcggcgagccggcgaggg 133
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Minus Query: 216 gcgggaggccagcgcccttccc 237 |||||||||||||||||||||| Sbjct: 1659676 gcgggaggccagcgcccttccc 1659655
>gb|AY020002.1| Oryza sativa microsatellite MRG2327 containing (CT)X14, genomic sequence Length = 228 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 ggcggcggcgagccggcgaggg 46 |||||||||||||||||||||| Sbjct: 67 ggcggcggcgagccggcgaggg 46
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence Length = 131860 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Minus Query: 25 ggcggcggcgagccggcgaggg 46 |||||||||||||||||||||| Sbjct: 51370 ggcggcggcgagccggcgaggg 51349
>gb|AC098598.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1007_H05, complete sequence Length = 108479 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 22 gtcggcggcggcgagccggcga 43 |||||||||||||||||||||| Sbjct: 75106 gtcggcggcggcgagccggcga 75127
>gb|AC018555.5| Homo sapiens chromosome 16 clone RP11-486F10, complete sequence Length = 187844 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 607 ccccttccatctctctatatat 628 |||||||||||||||||||||| Sbjct: 102581 ccccttccatctctctatatat 102602
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Minus Query: 24 cggcggcggcgagccggcgagg 45 |||||||||||||||||||||| Sbjct: 8634137 cggcggcggcgagccggcgagg 8634116
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 ggtcggcggcggcgagccggcg 42 |||||||||||||||||||||| Sbjct: 20151964 ggtcggcggcggcgagccggcg 20151985
>dbj|AP003827.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1372_D12 Length = 179898 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 ggtcggcggcggcgagccggcg 42 |||||||||||||||||||||| Sbjct: 54352 ggtcggcggcggcgagccggcg 54373
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 462 tggcgttgtcgaacggctccgg 483 |||||||||||||||||||||| Sbjct: 3767457 tggcgttgtcgaacggctccgg 3767478
>dbj|AP005249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0087F21 Length = 187401 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Minus Query: 24 cggcggcggcgagccggcgagg 45 |||||||||||||||||||||| Sbjct: 146048 cggcggcggcgagccggcgagg 146027
>dbj|AP003930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1657_A07 Length = 125217 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 ggtcggcggcggcgagccggcg 42 |||||||||||||||||||||| Sbjct: 116567 ggtcggcggcggcgagccggcg 116588
>dbj|AK107305.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-D01, full insert sequence Length = 1247 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 24 cggcggcggcgagccggcgagg 45 |||||||||||||||||||||| Sbjct: 281 cggcggcggcgagccggcgagg 302
>dbj|AK101652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057B20, full insert sequence Length = 1011 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 ggcggcggcgagccggcgaggg 46 |||||||||||||||||||||| Sbjct: 113 ggcggcggcgagccggcgaggg 134
>dbj|AK064730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-A12, full insert sequence Length = 1982 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Minus Query: 22 gtcggcggcggcgagccggcga 43 |||||||||||||||||||||| Sbjct: 1374 gtcggcggcggcgagccggcga 1353
>dbj|AK061127.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-H01, full insert sequence Length = 981 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 ggcggcggcgagccggcgaggg 46 |||||||||||||||||||||| Sbjct: 91 ggcggcggcgagccggcgaggg 112
>dbj|AK059467.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D09, full insert sequence Length = 671 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 25 ggcggcggcgagccggcgaggg 46 |||||||||||||||||||||| Sbjct: 99 ggcggcggcgagccggcgaggg 120
>emb|AJ535050.1|OSA535050 Oryza sativa (japonica cultivar-group) pdr5 gene for PDR-like ABC transporter, exons 1-19 Length = 12922 Score = 44.1 bits (22), Expect = 0.83 Identities = 22/22 (100%) Strand = Plus / Plus Query: 21 ggtcggcggcggcgagccggcg 42 |||||||||||||||||||||| Sbjct: 104 ggtcggcggcggcgagccggcg 125
>emb|CR855143.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0113I13, complete sequence Length = 138656 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 agaggaggcggcgagccgacg 82 ||||||||||||||||||||| Sbjct: 103827 agaggaggcggcgagccgacg 103807
>dbj|AK243140.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J100031I02, full insert sequence Length = 1490 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 24 cggcggcggcgagccggcgaggggc 48 |||||||||||||||| |||||||| Sbjct: 425 cggcggcggcgagccgacgaggggc 449
>dbj|AK241545.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065176E09, full insert sequence Length = 4121 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 24 cggcggcggcgagccggcgaggggc 48 |||||||||||||||| |||||||| Sbjct: 1281 cggcggcggcgagccgacgaggggc 1305
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 22 gtcggcggcggcgagccggcg 42 ||||||||||||||||||||| Sbjct: 4294983 gtcggcggcggcgagccggcg 4294963
>ref|NM_001060345.1| Oryza sativa (japonica cultivar-group) Os04g0607600 (Os04g0607600) mRNA, complete cds Length = 2266 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 agaggaggcggcgagccgacg 82 ||||||||||||||||||||| Sbjct: 486 agaggaggcggcgagccgacg 506
>emb|AM265639.1| Bacteriophage LKA1 complete genome, specific host Pseudomonas aeruginosa Length = 41593 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 481 cggtggcgactccaaggccga 501 ||||||||||||||||||||| Sbjct: 21007 cggtggcgactccaaggccga 21027
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 gggtcggcggcggcgagccgg 40 ||||||||||||||||||||| Sbjct: 6672560 gggtcggcggcggcgagccgg 6672540
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gtcggcggcggcgagccggcg 42 ||||||||||||||||||||| Sbjct: 1339613 gtcggcggcggcgagccggcg 1339633
>gb|AC144700.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0017H17, complete sequence Length = 156331 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 24 cggcggcggcgagccggcgaggggc 48 |||||||||||||||| |||||||| Sbjct: 56661 cggcggcggcgagccgacgaggggc 56685
>gb|AC126057.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0026D16, complete sequence Length = 129166 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 gtcgcgggaggccagcgccct 233 ||||||||||||||||||||| Sbjct: 95177 gtcgcgggaggccagcgccct 95197
>gb|AC013791.9| Homo sapiens chromosome 11, clone RP11-19N21, complete sequence Length = 174569 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 360 ctccttgcttctcatcctcctcccc 384 |||||| |||||||||||||||||| Sbjct: 112405 ctccttccttctcatcctcctcccc 112429
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 21 ggtcggcggcggcgagccggc 41 ||||||||||||||||||||| Sbjct: 2671740 ggtcggcggcggcgagccggc 2671760
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 24 cggcggcggcgagccggcgaggggc 48 |||||||||||||||| |||||||| Sbjct: 21845818 cggcggcggcgagccgacgaggggc 21845842 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 gtcgcgggaggccagcgccct 233 ||||||||||||||||||||| Sbjct: 25867316 gtcgcgggaggccagcgccct 25867336
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 agaggaggcggcgagccgacg 82 ||||||||||||||||||||| Sbjct: 30772852 agaggaggcggcgagccgacg 30772832
>emb|AL356794.10| Human DNA sequence from clone RP11-551A11 on chromosome 6 Contains a ribosomal protein S3A (40S ribosomal protein S3a, v-fos transformation effector protein 1) (RPS3A)(FTE1) pseudogene, complete sequence Length = 164439 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 612 tccatctctctatatatttct 632 ||||||||||||||||||||| Sbjct: 51687 tccatctctctatatatttct 51667
>gb|AC005950.1|AC005950 Homo sapiens Chromosome 11p15.5 PAC clone pDJ754h15 containing cdk-inhibitor p57/KIP2 (CDKN1C) gene, complete sequence Length = 137932 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 360 ctccttgcttctcatcctcctcccc 384 |||||| |||||||||||||||||| Sbjct: 33531 ctccttccttctcatcctcctcccc 33507
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03, complete sequence Length = 179798 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 agaggaggcggcgagccgacg 82 ||||||||||||||||||||| Sbjct: 40274 agaggaggcggcgagccgacg 40254
>dbj|AK120889.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029F13, full insert sequence Length = 2267 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 agaggaggcggcgagccgacg 82 ||||||||||||||||||||| Sbjct: 487 agaggaggcggcgagccgacg 507
>dbj|AK109852.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F09, full insert sequence Length = 1723 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 agaggaggcggcgagccgacg 82 ||||||||||||||||||||| Sbjct: 489 agaggaggcggcgagccgacg 509
>gb|AF214673.1|AF214673 Pseudomonas aeruginosa unknown in vivo-induced protein 131-15 gene, partial cds Length = 576 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 gtcggcggcggcgagccggcg 42 ||||||||||||||||||||| Sbjct: 251 gtcggcggcggcgagccggcg 271
>emb|AJ491853.1|OSA491853 Oryza sativa (japonica cultivar-group) partial hkt7 gene for putative sodium transporter, exons 1-3 Length = 5400 Score = 42.1 bits (21), Expect = 3.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 62 agaggaggcggcgagccgacg 82 ||||||||||||||||||||| Sbjct: 960 agaggaggcggcgagccgacg 980
>gb|AC003675.1|AC003675 Human Chromosome 11p15.5 P1 - 6959, complete sequence Length = 86621 Score = 42.1 bits (21), Expect = 3.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 360 ctccttgcttctcatcctcctcccc 384 |||||| |||||||||||||||||| Sbjct: 76948 ctccttccttctcatcctcctcccc 76924 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 136,120,994 Number of extensions: 7281598 Number of successful extensions: 145117 Number of sequences better than 10.0: 72 Number of HSP's gapped: 145112 Number of HSP's successfully gapped: 81 Length of query: 871 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 849 Effective length of database: 18,508,616,841 Effective search space: 15713815698009 Effective search space used: 15713815698009 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
