| Clone Name | FLbaf168p04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CR962131.2| Medicago truncatula chromosome 5 clone mth2-69b10, COMPLETE SEQUENCE Length = 115407 Score = 48.1 bits (24), Expect = 0.053 Identities = 24/24 (100%) Strand = Plus / Plus Query: 447 tggtggtgacggcggtggtgcggt 470 |||||||||||||||||||||||| Sbjct: 96040 tggtggtgacggcggtggtgcggt 96063
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 48.1 bits (24), Expect = 0.053 Identities = 33/36 (91%) Strand = Plus / Plus Query: 184 cctcaacgtcaccatcgccgccgacaatgccagcca 219 ||||||| ||||||||||||||||||| ||||||| Sbjct: 1131459 cctcaacctcaccatcgccgccgacaaccccagcca 1131494 Score = 48.1 bits (24), Expect = 0.053 Identities = 33/36 (91%) Strand = Plus / Plus Query: 184 cctcaacgtcaccatcgccgccgacaatgccagcca 219 ||||||| ||||||||||||||||||| ||||||| Sbjct: 1144779 cctcaacctcaccatcgccgccgacaaccccagcca 1144814
>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0660D08 Length = 146915 Score = 48.1 bits (24), Expect = 0.053 Identities = 33/36 (91%) Strand = Plus / Plus Query: 184 cctcaacgtcaccatcgccgccgacaatgccagcca 219 ||||||| ||||||||||||||||||| ||||||| Sbjct: 107682 cctcaacctcaccatcgccgccgacaaccccagcca 107717 Score = 48.1 bits (24), Expect = 0.053 Identities = 33/36 (91%) Strand = Plus / Plus Query: 184 cctcaacgtcaccatcgccgccgacaatgccagcca 219 ||||||| ||||||||||||||||||| ||||||| Sbjct: 121002 cctcaacctcaccatcgccgccgacaaccccagcca 121037
>gb|AC185983.3| Pan troglodytes BAC clone CH251-483E15 from chromosome 1, complete sequence Length = 177643 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 109281 gaccgggttcacggtggtggtga 109259
>gb|AC186035.3| Pan troglodytes BAC clone CH251-638I11 from chromosome 4, complete sequence Length = 202186 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 60412 gaccgggttcacggtggtggtga 60434
>gb|AC185976.2| Pan troglodytes BAC clone CH251-558J11 from chromosome 4, complete sequence Length = 174061 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 88053 gaccgggttcacggtggtggtga 88075
>gb|AC186042.3| Pan troglodytes BAC clone CH251-493O10 from chromosome 1, complete sequence Length = 174022 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 84059 gaccgggttcacggtggtggtga 84037
>gb|AC183760.2| Pan troglodytes BAC clone CH251-730F16 from chromosome 4, complete sequence Length = 179960 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 115099 gaccgggttcacggtggtggtga 115077
>gb|AC185984.2| Pan troglodytes BAC clone CH251-446C10 from chromosome 1, complete sequence Length = 146175 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 90745 gaccgggttcacggtggtggtga 90723
>gb|AC140546.12| Medicago truncatula clone mth2-35l19, complete sequence Length = 106962 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 447 tggtggtgacggcggtggtgcgg 469 ||||||||||||||||||||||| Sbjct: 53389 tggtggtgacggcggtggtgcgg 53367
>gb|AC182391.3| Pan troglodytes BAC clone CH251-510H16 from chromosome 1, complete sequence Length = 188995 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 125596 gaccgggttcacggtggtggtga 125574
>gb|AC146018.3| Pan troglodytes BAC clone RP43-135A21 from 7, complete sequence Length = 177841 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 147905 gaccgggttcacggtggtggtga 147883
>gb|AC103968.11| Homo sapiens chromosome 15, clone RP11-719C20, complete sequence Length = 162470 Score = 46.1 bits (23), Expect = 0.21 Identities = 26/27 (96%) Strand = Plus / Minus Query: 813 aatatatttgtgaagctggtttgaagt 839 ||||||||||| ||||||||||||||| Sbjct: 124367 aatatatttgtaaagctggtttgaagt 124341
>gb|AC110079.3| Homo sapiens BAC clone RP11-384K6 from 4, complete sequence Length = 167099 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 30866 gaccgggttcacggtggtggtga 30888
>emb|AL606534.15| Human DNA sequence from clone RP11-261C10 on chromosome 1 Contains four novel genes, the 5' end of a novel gene and the 3' end of the gene for KARP-1-binding protein (KAB), complete sequence Length = 183541 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 88139 gaccgggttcacggtggtggtga 88117
>gb|AC093752.2| Homo sapiens BAC clone RP11-33B1 from 4, complete sequence Length = 130879 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Minus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 28298 gaccgggttcacggtggtggtga 28276
>gb|AC005627.2|AC005627 Homo sapiens PAC clone RP4-577P23 from 1, complete sequence Length = 137304 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 433 gaccgggttcacggtggtggtga 455 ||||||||||||||||||||||| Sbjct: 27393 gaccgggttcacggtggtggtga 27415
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 46.1 bits (23), Expect = 0.21 Identities = 23/23 (100%) Strand = Plus / Plus Query: 311 tacgccgcgccgccgacggacga 333 ||||||||||||||||||||||| Sbjct: 1958163 tacgccgcgccgccgacggacga 1958185
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 444 cggtggtggtgacggcggtggtgcgg 469 ||||||||||| |||||||||||||| Sbjct: 12545823 cggtggtggtgccggcggtggtgcgg 12545848
>emb|CT573213.2| Frankia alni str. ACN14A chromosome, complete sequence Length = 7497934 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 444 cggtggtggtgacggcggtggtgcgg 469 ||||||||| |||||||||||||||| Sbjct: 3298362 cggtggtggggacggcggtggtgcgg 3298387
>ref|NM_167330.2| Drosophila melanogaster tomosyn CG17762-RD, transcript variant D (tomosyn), mRNA Length = 5421 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 444 cggtggtggtgacggcggtggtgcgg 469 ||||||||||| |||||||||||||| Sbjct: 4272 cggtggtggtgccggcggtggtgcgg 4297
>ref|NM_167329.2| Drosophila melanogaster tomosyn CG17762-RC, transcript variant C (tomosyn), mRNA Length = 5421 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 444 cggtggtggtgacggcggtggtgcgg 469 ||||||||||| |||||||||||||| Sbjct: 4272 cggtggtggtgccggcggtggtgcgg 4297
>ref|NM_167328.2| Drosophila melanogaster tomosyn CG17762-RA, transcript variant A (tomosyn), mRNA Length = 4530 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 444 cggtggtggtgacggcggtggtgcgg 469 ||||||||||| |||||||||||||| Sbjct: 3381 cggtggtggtgccggcggtggtgcgg 3406
>ref|NM_132591.3| Drosophila melanogaster tomosyn CG17762-RB, transcript variant B (tomosyn), mRNA Length = 4326 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 444 cggtggtggtgacggcggtggtgcgg 469 ||||||||||| |||||||||||||| Sbjct: 3177 cggtggtggtgccggcggtggtgcgg 3202
>gb|AC023741.4| Drosophila melanogaster X BAC RP98-23O9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 160440 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 444 cggtggtggtgacggcggtggtgcgg 469 ||||||||||| |||||||||||||| Sbjct: 10714 cggtggtggtgccggcggtggtgcgg 10739
>gb|AC023681.5| Drosophila melanogaster X BAC RP98-39P3 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 153733 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Minus Query: 444 cggtggtggtgacggcggtggtgcgg 469 ||||||||||| |||||||||||||| Sbjct: 31786 cggtggtggtgccggcggtggtgcgg 31761
>ref|NM_001030749.1| Gallus gallus ELK3, ETS-domain protein (SRF accessory protein 2) (ELK3), mRNA emb|AJ719357.1| Gallus gallus mRNA for hypothetical protein, clone 1j13 Length = 2961 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Minus Query: 523 ccacgtctccttcccggcagaaggat 548 |||||||||||||||| ||||||||| Sbjct: 2191 ccacgtctccttcccgacagaaggat 2166
>gb|BT003569.1| Drosophila melanogaster LD44990 full insert cDNA Length = 2399 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Plus Query: 444 cggtggtggtgacggcggtggtgcgg 469 ||||||||||| |||||||||||||| Sbjct: 1232 cggtggtggtgccggcggtggtgcgg 1257
>emb|CR407103.1| Gallus gallus finished cDNA, clone ChEST751j4 Length = 1344 Score = 44.1 bits (22), Expect = 0.82 Identities = 25/26 (96%) Strand = Plus / Minus Query: 523 ccacgtctccttcccggcagaaggat 548 |||||||||||||||| ||||||||| Sbjct: 576 ccacgtctccttcccgacagaaggat 551
>gb|CP000463.1| Rhodopseudomonas palustris BisA53, complete genome Length = 5505494 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 499 ctacgacatcaaggcctcctgcacc 523 ||||||||||||||||||| ||||| Sbjct: 4695492 ctacgacatcaaggcctccggcacc 4695468
>gb|AC163221.5| Mus musculus chromosome 19, clone RP23-376A6, complete sequence Length = 188739 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 443 acggtggtggtgacggcggtggtgc 467 |||||||||||| |||||||||||| Sbjct: 125751 acggtggtggtggcggcggtggtgc 125727
>gb|CP000384.1| Mycobacterium sp. MCS, complete genome Length = 5705448 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 185 ctcaacgtcaccatcgccgccgaca 209 ||||||||||||| ||||||||||| Sbjct: 4792479 ctcaacgtcaccaacgccgccgaca 4792503
>gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11, complete sequence Length = 146677 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 445 ggtggtggtgacggcggtggtgcgg 469 |||||||||||||||| |||||||| Sbjct: 66605 ggtggtggtgacggcgctggtgcgg 66581
>gb|AC129295.4| Mus musculus BAC clone RP24-560M23 from chromosome 1, complete sequence Length = 121538 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 683 tttcatttccccagatgtttg 703 ||||||||||||||||||||| Sbjct: 63613 tttcatttccccagatgtttg 63593
>gb|AC099774.6| Oryza sativa chromosome 10 BAC OSJNBa0073L20 genomic sequence, complete sequence Length = 147651 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 443 acggtggtggtgacggcggtggtgc 467 |||||||||||||| |||||||||| Sbjct: 76943 acggtggtggtgacagcggtggtgc 76967
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 499 ctacgacatcaaggcctcctgcacc 523 ||||||||||||||||||| ||||| Sbjct: 4727229 ctacgacatcaaggcctccggcacc 4727205
>gb|AC090486.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0093I09, from Chromosome 10, complete sequence Length = 172434 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 443 acggtggtggtgacggcggtggtgc 467 |||||||||||||| |||||||||| Sbjct: 167399 acggtggtggtgacagcggtggtgc 167423
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 443 acggtggtggtgacggcggtggtgc 467 |||||||||||||| |||||||||| Sbjct: 8686302 acggtggtggtgacagcggtggtgc 8686326
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 445 ggtggtggtgacggcggtggtgcgg 469 |||||||||||||||| |||||||| Sbjct: 9294660 ggtggtggtgacggcgctggtgcgg 9294636
>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16 Length = 345012 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 499 ctacgacatcaaggcctcctgcacc 523 ||||||||||||||||||| ||||| Sbjct: 13571 ctacgacatcaaggcctccggcacc 13547
>gb|AC157660.2| Mus musculus BAC clone RP23-263I16 from chromosome 1, complete sequence Length = 192026 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 683 tttcatttccccagatgtttg 703 ||||||||||||||||||||| Sbjct: 36439 tttcatttccccagatgtttg 36459
>dbj|AB016885.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K19M22 Length = 77758 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 632 aatctcgtttcttgatcttca 652 ||||||||||||||||||||| Sbjct: 45330 aatctcgtttcttgatcttca 45310
>emb|AJ890364.1| Emiliania huxleyi virus 86 isolate EhV86 Length = 407339 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 444 cggtggtggtgacggcggtgg 464 ||||||||||||||||||||| Sbjct: 128308 cggtggtggtgacggcggtgg 128288
>gb|AC136730.9| Mus musculus chromosome 19, clone RP23-76E22, complete sequence Length = 146616 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 443 acggtggtggtgacggcggtggtgc 467 |||||||||||| |||||||||||| Sbjct: 61256 acggtggtggtggcggcggtggtgc 61232 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 129,748,364 Number of extensions: 6806797 Number of successful extensions: 151740 Number of sequences better than 10.0: 44 Number of HSP's gapped: 151740 Number of HSP's successfully gapped: 46 Length of query: 862 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 840 Effective length of database: 18,508,616,841 Effective search space: 15547238146440 Effective search space used: 15547238146440 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)