ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf165o20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome... 159 2e-35
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 159 2e-35
3gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) ch... 159 2e-35
4gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence 44 0.80
5emb|AM236080.1| Rhizobium leguminosarum bv. viciae chromosome co... 42 3.2
6ref|XM_509216.2| PREDICTED: Pan troglodytes chaperonin containin... 42 3.2
7gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 3.2
8gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 42 3.2
9gb|AC142349.1| Pan troglodytes BAC clone RP43-9F6 from 7, comple... 42 3.2
10gb|AC018921.22| Homo sapiens 12 BAC RP11-956E11 (Roswell Park Ca... 42 3.2
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 3.2
12dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 42 3.2
13emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS finger... 42 3.2
14emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 42 3.2
15emb|CR383661.10| Zebrafish DNA sequence from clone DKEY-44L21 in... 42 3.2
16gb|AC140183.2| Mus musculus BAC clone RP24-350N4 from chromosome... 42 3.2
17gb|AC019100.4| Homo sapiens BAC clone RP11-443K8 from 2, complet... 42 3.2
18gb|AC025164.37| Homo sapiens 12 BAC RP11-796E2 (Roswell Park Can... 42 3.2
19ref|XM_320187.2| Anopheles gambiae str. PEST ENSANGP00000023353 ... 42 3.2
20gb|U91327.1|HSU91327 Human chromosome 12p15 BAC clone CIT987SK-9... 42 3.2
21gb|AC122426.5| Mus musculus BAC clone RP24-174I4 from 9, complet... 42 3.2
22emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa... 42 3.2
23emb|AL732503.8| Mouse DNA sequence from clone RP23-28O9 on chrom... 42 3.2

>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17,
             complete sequence
          Length = 141041
 Score =  159 bits (80), Expect = 2e-35
 Identities = 170/198 (85%), Gaps = 9/198 (4%)
 Strand = Plus / Plus

                                                                         
Query: 158   caggattcggcagggaccagctcaaggtccaggtggagccgccggggagcctcaagatca 217
             |||| ||| ||| |||||| |||||||||||||||||| || |||||||||||| |||||
Sbjct: 28948 cagggttcagcaaggaccatctcaaggtccaggtggaggcgtcggggagcctcaggatca 29007

                                                                         
Query: 218   gcggcgagcgtgccgtcaa---cggcggccgccaatggtgccacttcctcaagcggttcg 274
             |||||||||| ||||||||   |||||||||||| |||  ||||||||||||||| ||||
Sbjct: 29008 gcggcgagcgcgccgtcaacggcggcggccgccattggctccacttcctcaagcgcttcg 29067

                                                                         
Query: 275   acctc---cccggcgtctgcgatgccg---cggctatcaaggtccagctcgacaagggag 328
             |||||   ||||||| |  ||| | ||   |||| ||||||||||||||||||||||| |
Sbjct: 29068 acctccctcccggcgccgccgacgacgcgtcggcgatcaaggtccagctcgacaagggcg 29127

                               
Query: 329   tcctctacgtccaggtgc 346
             ||||||||||||||||||
Sbjct: 29128 tcctctacgtccaggtgc 29145



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                         
Query: 75    tcgctctcgcgtcgtggctgaagtcgacccccgcagcgaatgggtttatggggacgagtt 134
             |||||| || ||| || ||||| ||||||||| |||||||||| || | || ||||||||
Sbjct: 28339 tcgctcccgtgtcctgtctgaaatcgacccccacagcgaatggattcacggtgacgagtt 28398

                       
Query: 135   cgacacgctc 144
             ||||||||||
Sbjct: 28399 cgacacgctc 28408



 Score = 44.1 bits (22), Expect = 0.80
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 512   tcctgaacatcgtgctcgccgtcgtgctcctctggcttgtcgcgttcgccaaca 565
             |||| ||| ||||| ||||||||||  | |||||||| ||| ||||||||||||
Sbjct: 29308 tcctcaacgtcgtgatcgccgtcgtcttgctctggctcgtcacgttcgccaaca 29361



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score =  159 bits (80), Expect = 2e-35
 Identities = 170/198 (85%), Gaps = 9/198 (4%)
 Strand = Plus / Plus

                                                                            
Query: 158      caggattcggcagggaccagctcaaggtccaggtggagccgccggggagcctcaagatca 217
                |||| ||| ||| |||||| |||||||||||||||||| || |||||||||||| |||||
Sbjct: 15175249 cagggttcagcaaggaccatctcaaggtccaggtggaggcgtcggggagcctcaggatca 15175308

                                                                            
Query: 218      gcggcgagcgtgccgtcaa---cggcggccgccaatggtgccacttcctcaagcggttcg 274
                |||||||||| ||||||||   |||||||||||| |||  ||||||||||||||| ||||
Sbjct: 15175309 gcggcgagcgcgccgtcaacggcggcggccgccattggctccacttcctcaagcgcttcg 15175368

                                                                            
Query: 275      acctc---cccggcgtctgcgatgccg---cggctatcaaggtccagctcgacaagggag 328
                |||||   ||||||| |  ||| | ||   |||| ||||||||||||||||||||||| |
Sbjct: 15175369 acctccctcccggcgccgccgacgacgcgtcggcgatcaaggtccagctcgacaagggcg 15175428

                                  
Query: 329      tcctctacgtccaggtgc 346
                ||||||||||||||||||
Sbjct: 15175429 tcctctacgtccaggtgc 15175446



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                            
Query: 75       tcgctctcgcgtcgtggctgaagtcgacccccgcagcgaatgggtttatggggacgagtt 134
                |||||| || ||| || ||||| ||||||||| |||||||||| || | || ||||||||
Sbjct: 15174640 tcgctcccgtgtcctgtctgaaatcgacccccacagcgaatggattcacggtgacgagtt 15174699

                          
Query: 135      cgacacgctc 144
                ||||||||||
Sbjct: 15174700 cgacacgctc 15174709



 Score = 44.1 bits (22), Expect = 0.80
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                      
Query: 512      tcctgaacatcgtgctcgccgtcgtgctcctctggcttgtcgcgttcgccaaca 565
                |||| ||| ||||| ||||||||||  | |||||||| ||| ||||||||||||
Sbjct: 15175609 tcctcaacgtcgtgatcgccgtcgtcttgctctggctcgtcacgttcgccaaca 15175662



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>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11,
             complete sequence
          Length = 129420

 Score =  159 bits (80), Expect = 2e-35
 Identities = 170/198 (85%), Gaps = 9/198 (4%)
 Strand = Plus / Plus

                                                                         
Query: 158   caggattcggcagggaccagctcaaggtccaggtggagccgccggggagcctcaagatca 217
             |||| ||| ||| |||||| |||||||||||||||||| || |||||||||||| |||||
Sbjct: 83862 cagggttcagcaaggaccatctcaaggtccaggtggaggcgtcggggagcctcaggatca 83921

                                                                         
Query: 218   gcggcgagcgtgccgtcaa---cggcggccgccaatggtgccacttcctcaagcggttcg 274
             |||||||||| ||||||||   |||||||||||| |||  ||||||||||||||| ||||
Sbjct: 83922 gcggcgagcgcgccgtcaacggcggcggccgccattggctccacttcctcaagcgcttcg 83981

                                                                         
Query: 275   acctc---cccggcgtctgcgatgccg---cggctatcaaggtccagctcgacaagggag 328
             |||||   ||||||| |  ||| | ||   |||| ||||||||||||||||||||||| |
Sbjct: 83982 acctccctcccggcgccgccgacgacgcgtcggcgatcaaggtccagctcgacaagggcg 84041

                               
Query: 329   tcctctacgtccaggtgc 346
             ||||||||||||||||||
Sbjct: 84042 tcctctacgtccaggtgc 84059



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                         
Query: 75    tcgctctcgcgtcgtggctgaagtcgacccccgcagcgaatgggtttatggggacgagtt 134
             |||||| || ||| || ||||| ||||||||| |||||||||| || | || ||||||||
Sbjct: 83253 tcgctcccgtgtcctgtctgaaatcgacccccacagcgaatggattcacggtgacgagtt 83312

                       
Query: 135   cgacacgctc 144
             ||||||||||
Sbjct: 83313 cgacacgctc 83322



 Score = 44.1 bits (22), Expect = 0.80
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                   
Query: 512   tcctgaacatcgtgctcgccgtcgtgctcctctggcttgtcgcgttcgccaaca 565
             |||| ||| ||||| ||||||||||  | |||||||| ||| ||||||||||||
Sbjct: 84222 tcctcaacgtcgtgatcgccgtcgtcttgctctggctcgtcacgttcgccaaca 84275



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>gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence
          Length = 181705

 Score = 44.1 bits (22), Expect = 0.80
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 51    gcaagagatggaggcagctggg 72
             ||||||||||||||||||||||
Sbjct: 30189 gcaagagatggaggcagctggg 30210



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>emb|AM236080.1| Rhizobium leguminosarum bv. viciae chromosome complete genome, strain 3841
          Length = 5057142

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 521     tcgtgctcgccgtcgtgctcc 541
               |||||||||||||||||||||
Sbjct: 3372233 tcgtgctcgccgtcgtgctcc 3372253



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>ref|XM_509216.2| PREDICTED: Pan troglodytes chaperonin containing TCP1, subunit 2
           (CCT2), mRNA
          Length = 2107

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 420 gttctggagcggcggccacgc 440
           |||||||||||||||||||||
Sbjct: 30  gttctggagcggcggccacgc 50



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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 219     cggcgagcgtgccgtcaacggcggccgcc 247
               ||||||||||| |||| ||||||||||||
Sbjct: 2516384 cggcgagcgtggcgtcgacggcggccgcc 2516412



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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 219     cggcgagcgtgccgtcaacggcggccgcc 247
               ||||||||||| |||| ||||||||||||
Sbjct: 3668275 cggcgagcgtggcgtcgacggcggccgcc 3668247



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>gb|AC142349.1| Pan troglodytes BAC clone RP43-9F6 from 7, complete sequence
          Length = 192143

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 802    tagagaaatataaaagcattt 822
              |||||||||||||||||||||
Sbjct: 111256 tagagaaatataaaagcattt 111236



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>gb|AC018921.22| Homo sapiens 12 BAC RP11-956E11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 188666

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 420   gttctggagcggcggccacgc 440
             |||||||||||||||||||||
Sbjct: 58574 gttctggagcggcggccacgc 58554



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12
          Length = 27566993

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 565      agcaagcagagcggtgggcag 585
                |||||||||||||||||||||
Sbjct: 24805688 agcaagcagagcggtgggcag 24805668



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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 435    ccacgcggcggcgtggcgagc 455
              |||||||||||||||||||||
Sbjct: 738479 ccacgcggcggcgtggcgagc 738459



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>emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 3/10
          Length = 348475

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 435   ccacgcggcggcgtggcgagc 455
             |||||||||||||||||||||
Sbjct: 42094 ccacgcggcggcgtggcgagc 42074



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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 219     cggcgagcgtgccgtcaacggcggccgcc 247
               ||||||||||| |||| ||||||||||||
Sbjct: 3409399 cggcgagcgtggcgtcgacggcggccgcc 3409371



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>emb|CR383661.10| Zebrafish DNA sequence from clone DKEY-44L21 in linkage group 20
             Contains the gene for a novel protein similar to mouse and
             human O-acyltransferase (membrane bound) domain containing
             2 (OACT2), the 5' end of the gene for a novel protein
             similar to rat kinase D-interacting substance of 220 kDa
             (RGD:619949) and a CpG island, complete sequence
          Length = 116874

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 25    agcaacaattggagcaagtgcaaaa 49
             ||||||||||| |||||||||||||
Sbjct: 68229 agcaacaattgtagcaagtgcaaaa 68253



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>gb|AC140183.2| Mus musculus BAC clone RP24-350N4 from chromosome 9, complete
            sequence
          Length = 181029

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 49   aagcaagagatggaggcagct 69
            |||||||||||||||||||||
Sbjct: 7674 aagcaagagatggaggcagct 7694



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>gb|AC019100.4| Homo sapiens BAC clone RP11-443K8 from 2, complete sequence
          Length = 213475

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 50     agcaagagatggaggcagctgggta 74
              |||||||||| ||||||||||||||
Sbjct: 141118 agcaagagattgaggcagctgggta 141094



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>gb|AC025164.37| Homo sapiens 12 BAC RP11-796E2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 216841

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 723   ccactttattggttgtgtatcatatttct 751
             |||||||||||||||  ||||||||||||
Sbjct: 70599 ccactttattggttgattatcatatttct 70571



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>ref|XM_320187.2| Anopheles gambiae str. PEST ENSANGP00000023353
           (ENSANGG00000020012), partial mRNA
          Length = 2436

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 257 acttcctcaagcggttcgacctccc 281
           |||||||||||||||||||| ||||
Sbjct: 458 acttcctcaagcggttcgacatccc 482



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>gb|U91327.1|HSU91327 Human chromosome 12p15 BAC clone CIT987SK-99D8 complete sequence
          Length = 129252

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 420    gttctggagcggcggccacgc 440
              |||||||||||||||||||||
Sbjct: 122651 gttctggagcggcggccacgc 122671



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>gb|AC122426.5| Mus musculus BAC clone RP24-174I4 from 9, complete sequence
          Length = 153629

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 49     aagcaagagatggaggcagct 69
              |||||||||||||||||||||
Sbjct: 124424 aagcaagagatggaggcagct 124444



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>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 140383

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 565    agcaagcagagcggtgggcag 585
              |||||||||||||||||||||
Sbjct: 112845 agcaagcagagcggtgggcag 112825



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>emb|AL732503.8| Mouse DNA sequence from clone RP23-28O9 on chromosome 4, complete
             sequence
          Length = 148526

 Score = 42.1 bits (21), Expect = 3.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 751   tgcattgatgatctaaaatga 771
             |||||||||||||||||||||
Sbjct: 81040 tgcattgatgatctaaaatga 81060


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 125,719,733
Number of extensions: 7463040
Number of successful extensions: 136852
Number of sequences better than 10.0: 23
Number of HSP's gapped: 136849
Number of HSP's successfully gapped: 32
Length of query: 838
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 816
Effective length of database: 18,508,616,841
Effective search space: 15103031342256
Effective search space used: 15103031342256
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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