| Clone Name | FLbaf165o20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC087550.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0016G17, complete sequence Length = 141041 Score = 159 bits (80), Expect = 2e-35 Identities = 170/198 (85%), Gaps = 9/198 (4%) Strand = Plus / Plus Query: 158 caggattcggcagggaccagctcaaggtccaggtggagccgccggggagcctcaagatca 217 |||| ||| ||| |||||| |||||||||||||||||| || |||||||||||| ||||| Sbjct: 28948 cagggttcagcaaggaccatctcaaggtccaggtggaggcgtcggggagcctcaggatca 29007 Query: 218 gcggcgagcgtgccgtcaa---cggcggccgccaatggtgccacttcctcaagcggttcg 274 |||||||||| |||||||| |||||||||||| ||| ||||||||||||||| |||| Sbjct: 29008 gcggcgagcgcgccgtcaacggcggcggccgccattggctccacttcctcaagcgcttcg 29067 Query: 275 acctc---cccggcgtctgcgatgccg---cggctatcaaggtccagctcgacaagggag 328 ||||| ||||||| | ||| | || |||| ||||||||||||||||||||||| | Sbjct: 29068 acctccctcccggcgccgccgacgacgcgtcggcgatcaaggtccagctcgacaagggcg 29127 Query: 329 tcctctacgtccaggtgc 346 |||||||||||||||||| Sbjct: 29128 tcctctacgtccaggtgc 29145 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 75 tcgctctcgcgtcgtggctgaagtcgacccccgcagcgaatgggtttatggggacgagtt 134 |||||| || ||| || ||||| ||||||||| |||||||||| || | || |||||||| Sbjct: 28339 tcgctcccgtgtcctgtctgaaatcgacccccacagcgaatggattcacggtgacgagtt 28398 Query: 135 cgacacgctc 144 |||||||||| Sbjct: 28399 cgacacgctc 28408 Score = 44.1 bits (22), Expect = 0.80 Identities = 46/54 (85%) Strand = Plus / Plus Query: 512 tcctgaacatcgtgctcgccgtcgtgctcctctggcttgtcgcgttcgccaaca 565 |||| ||| ||||| |||||||||| | |||||||| ||| |||||||||||| Sbjct: 29308 tcctcaacgtcgtgatcgccgtcgtcttgctctggctcgtcacgttcgccaaca 29361
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10 Length = 22685906 Score = 159 bits (80), Expect = 2e-35 Identities = 170/198 (85%), Gaps = 9/198 (4%) Strand = Plus / Plus Query: 158 caggattcggcagggaccagctcaaggtccaggtggagccgccggggagcctcaagatca 217 |||| ||| ||| |||||| |||||||||||||||||| || |||||||||||| ||||| Sbjct: 15175249 cagggttcagcaaggaccatctcaaggtccaggtggaggcgtcggggagcctcaggatca 15175308 Query: 218 gcggcgagcgtgccgtcaa---cggcggccgccaatggtgccacttcctcaagcggttcg 274 |||||||||| |||||||| |||||||||||| ||| ||||||||||||||| |||| Sbjct: 15175309 gcggcgagcgcgccgtcaacggcggcggccgccattggctccacttcctcaagcgcttcg 15175368 Query: 275 acctc---cccggcgtctgcgatgccg---cggctatcaaggtccagctcgacaagggag 328 ||||| ||||||| | ||| | || |||| ||||||||||||||||||||||| | Sbjct: 15175369 acctccctcccggcgccgccgacgacgcgtcggcgatcaaggtccagctcgacaagggcg 15175428 Query: 329 tcctctacgtccaggtgc 346 |||||||||||||||||| Sbjct: 15175429 tcctctacgtccaggtgc 15175446 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 75 tcgctctcgcgtcgtggctgaagtcgacccccgcagcgaatgggtttatggggacgagtt 134 |||||| || ||| || ||||| ||||||||| |||||||||| || | || |||||||| Sbjct: 15174640 tcgctcccgtgtcctgtctgaaatcgacccccacagcgaatggattcacggtgacgagtt 15174699 Query: 135 cgacacgctc 144 |||||||||| Sbjct: 15174700 cgacacgctc 15174709 Score = 44.1 bits (22), Expect = 0.80 Identities = 46/54 (85%) Strand = Plus / Plus Query: 512 tcctgaacatcgtgctcgccgtcgtgctcctctggcttgtcgcgttcgccaaca 565 |||| ||| ||||| |||||||||| | |||||||| ||| |||||||||||| Sbjct: 15175609 tcctcaacgtcgtgatcgccgtcgtcttgctctggctcgtcacgttcgccaaca 15175662
>gb|AC087547.2|AC087547 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0040I11, complete sequence Length = 129420 Score = 159 bits (80), Expect = 2e-35 Identities = 170/198 (85%), Gaps = 9/198 (4%) Strand = Plus / Plus Query: 158 caggattcggcagggaccagctcaaggtccaggtggagccgccggggagcctcaagatca 217 |||| ||| ||| |||||| |||||||||||||||||| || |||||||||||| ||||| Sbjct: 83862 cagggttcagcaaggaccatctcaaggtccaggtggaggcgtcggggagcctcaggatca 83921 Query: 218 gcggcgagcgtgccgtcaa---cggcggccgccaatggtgccacttcctcaagcggttcg 274 |||||||||| |||||||| |||||||||||| ||| ||||||||||||||| |||| Sbjct: 83922 gcggcgagcgcgccgtcaacggcggcggccgccattggctccacttcctcaagcgcttcg 83981 Query: 275 acctc---cccggcgtctgcgatgccg---cggctatcaaggtccagctcgacaagggag 328 ||||| ||||||| | ||| | || |||| ||||||||||||||||||||||| | Sbjct: 83982 acctccctcccggcgccgccgacgacgcgtcggcgatcaaggtccagctcgacaagggcg 84041 Query: 329 tcctctacgtccaggtgc 346 |||||||||||||||||| Sbjct: 84042 tcctctacgtccaggtgc 84059 Score = 60.0 bits (30), Expect = 1e-05 Identities = 60/70 (85%) Strand = Plus / Plus Query: 75 tcgctctcgcgtcgtggctgaagtcgacccccgcagcgaatgggtttatggggacgagtt 134 |||||| || ||| || ||||| ||||||||| |||||||||| || | || |||||||| Sbjct: 83253 tcgctcccgtgtcctgtctgaaatcgacccccacagcgaatggattcacggtgacgagtt 83312 Query: 135 cgacacgctc 144 |||||||||| Sbjct: 83313 cgacacgctc 83322 Score = 44.1 bits (22), Expect = 0.80 Identities = 46/54 (85%) Strand = Plus / Plus Query: 512 tcctgaacatcgtgctcgccgtcgtgctcctctggcttgtcgcgttcgccaaca 565 |||| ||| ||||| |||||||||| | |||||||| ||| |||||||||||| Sbjct: 84222 tcctcaacgtcgtgatcgccgtcgtcttgctctggctcgtcacgttcgccaaca 84275
>gb|AC144400.2| Lemur catta clone LBNL2-87E20, complete sequence Length = 181705 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 gcaagagatggaggcagctggg 72 |||||||||||||||||||||| Sbjct: 30189 gcaagagatggaggcagctggg 30210
>emb|AM236080.1| Rhizobium leguminosarum bv. viciae chromosome complete genome, strain 3841 Length = 5057142 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 521 tcgtgctcgccgtcgtgctcc 541 ||||||||||||||||||||| Sbjct: 3372233 tcgtgctcgccgtcgtgctcc 3372253
>ref|XM_509216.2| PREDICTED: Pan troglodytes chaperonin containing TCP1, subunit 2 (CCT2), mRNA Length = 2107 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 gttctggagcggcggccacgc 440 ||||||||||||||||||||| Sbjct: 30 gttctggagcggcggccacgc 50
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 219 cggcgagcgtgccgtcaacggcggccgcc 247 ||||||||||| |||| |||||||||||| Sbjct: 2516384 cggcgagcgtggcgtcgacggcggccgcc 2516412
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 219 cggcgagcgtgccgtcaacggcggccgcc 247 ||||||||||| |||| |||||||||||| Sbjct: 3668275 cggcgagcgtggcgtcgacggcggccgcc 3668247
>gb|AC142349.1| Pan troglodytes BAC clone RP43-9F6 from 7, complete sequence Length = 192143 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 802 tagagaaatataaaagcattt 822 ||||||||||||||||||||| Sbjct: 111256 tagagaaatataaaagcattt 111236
>gb|AC018921.22| Homo sapiens 12 BAC RP11-956E11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188666 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 gttctggagcggcggccacgc 440 ||||||||||||||||||||| Sbjct: 58574 gttctggagcggcggccacgc 58554
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 agcaagcagagcggtgggcag 585 ||||||||||||||||||||| Sbjct: 24805688 agcaagcagagcggtgggcag 24805668
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome Length = 3309401 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 ccacgcggcggcgtggcgagc 455 ||||||||||||||||||||| Sbjct: 738479 ccacgcggcggcgtggcgagc 738459
>emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete genome; segment 3/10 Length = 348475 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 435 ccacgcggcggcgtggcgagc 455 ||||||||||||||||||||| Sbjct: 42094 ccacgcggcggcgtggcgagc 42074
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 219 cggcgagcgtgccgtcaacggcggccgcc 247 ||||||||||| |||| |||||||||||| Sbjct: 3409399 cggcgagcgtggcgtcgacggcggccgcc 3409371
>emb|CR383661.10| Zebrafish DNA sequence from clone DKEY-44L21 in linkage group 20 Contains the gene for a novel protein similar to mouse and human O-acyltransferase (membrane bound) domain containing 2 (OACT2), the 5' end of the gene for a novel protein similar to rat kinase D-interacting substance of 220 kDa (RGD:619949) and a CpG island, complete sequence Length = 116874 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 25 agcaacaattggagcaagtgcaaaa 49 ||||||||||| ||||||||||||| Sbjct: 68229 agcaacaattgtagcaagtgcaaaa 68253
>gb|AC140183.2| Mus musculus BAC clone RP24-350N4 from chromosome 9, complete sequence Length = 181029 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 aagcaagagatggaggcagct 69 ||||||||||||||||||||| Sbjct: 7674 aagcaagagatggaggcagct 7694
>gb|AC019100.4| Homo sapiens BAC clone RP11-443K8 from 2, complete sequence Length = 213475 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 50 agcaagagatggaggcagctgggta 74 |||||||||| |||||||||||||| Sbjct: 141118 agcaagagattgaggcagctgggta 141094
>gb|AC025164.37| Homo sapiens 12 BAC RP11-796E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 216841 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 723 ccactttattggttgtgtatcatatttct 751 ||||||||||||||| |||||||||||| Sbjct: 70599 ccactttattggttgattatcatatttct 70571
>ref|XM_320187.2| Anopheles gambiae str. PEST ENSANGP00000023353 (ENSANGG00000020012), partial mRNA Length = 2436 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 257 acttcctcaagcggttcgacctccc 281 |||||||||||||||||||| |||| Sbjct: 458 acttcctcaagcggttcgacatccc 482
>gb|U91327.1|HSU91327 Human chromosome 12p15 BAC clone CIT987SK-99D8 complete sequence Length = 129252 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 420 gttctggagcggcggccacgc 440 ||||||||||||||||||||| Sbjct: 122651 gttctggagcggcggccacgc 122671
>gb|AC122426.5| Mus musculus BAC clone RP24-174I4 from 9, complete sequence Length = 153629 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 aagcaagagatggaggcagct 69 ||||||||||||||||||||| Sbjct: 124424 aagcaagagatggaggcagct 124444
>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140383 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 agcaagcagagcggtgggcag 585 ||||||||||||||||||||| Sbjct: 112845 agcaagcagagcggtgggcag 112825
>emb|AL732503.8| Mouse DNA sequence from clone RP23-28O9 on chromosome 4, complete sequence Length = 148526 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 751 tgcattgatgatctaaaatga 771 ||||||||||||||||||||| Sbjct: 81040 tgcattgatgatctaaaatga 81060 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 125,719,733 Number of extensions: 7463040 Number of successful extensions: 136852 Number of sequences better than 10.0: 23 Number of HSP's gapped: 136849 Number of HSP's successfully gapped: 32 Length of query: 838 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 816 Effective length of database: 18,508,616,841 Effective search space: 15103031342256 Effective search space used: 15103031342256 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)