ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf163i06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK121845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101I21, full insert sequence Length = 1737 Score = 424 bits (214), Expect = e-115 Identities = 445/522 (85%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 367 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 426 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 427 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 486 Query: 568 gaagtaagaataatgctgggcaagaaagatagtaggggatatgcttttgttactttcaga 627 ||||||||||| ||| || ||| | ||||| ||||||||||||||||||| ||| ||| Sbjct: 487 gaagtaagaatgatgagaggaaaggacgatagcaggggatatgcttttgttaattttaga 546 Query: 628 actaacgatctggctttgaaggccatcgagaaattgaacaatgcaactttcaagggaaag 687 ||||| | | |||| || |||| || | ||||||||||||||| | ||||||||| Sbjct: 547 actaaaggtttggcattaaaggttgtcaaagaattgaacaatgcaaaactgaagggaaag 606 Query: 688 aggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatgtacctcac 747 || ||| ||||||||||| ||||||||||||||||| ||| ||||||||||||| || Sbjct: 607 cggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatgtaccccat 666 Query: 748 agttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggagtattaaaa 807 |||||| || |||||||||||| ||| || ||| | |||| |||||| |||||||||||| Sbjct: 667 agttggacagatgatgatttcagaaaggctgtggaggaagatggtccaggagtattaaaa 726 Query: 808 gttgatctcattaagggctcacatacagatcgcaatcggggttatggtttcgttgaatac 867 | ||||||||| |||| |||| | || |||||||||||||||||||||| ||||||||| Sbjct: 727 gctgatctcatgaaggtctcaagtgcaaatcgcaatcggggttatggttttgttgaatac 786 Query: 868 tataataatgcatgcgctgagtattcaaggcagaagatgactgcgccaaatttcaaacta 927 || || ||||||| || |||||| |||||||| ||||| || | |||| ||||||||| Sbjct: 787 tacaaccatgcatgtgcagagtatgcaaggcaggagatgtcttccccaacattcaaacta 846 Query: 928 gatacaaatgctcctaatgtcagctgggcagatcctaagaat 969 ||| |||||||||||| |||||||||||||||||||||||| Sbjct: 847 gattcaaatgctcctacagtcagctgggcagatcctaagaat 888 Score = 228 bits (115), Expect = 6e-56 Identities = 220/255 (86%) Strand = Plus / Plus Query: 990 ctctacttcacaggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagg 1049 ||||||||| ||||| |||||||||||||| ||||| | |||||||||||||||||||| Sbjct: 900 ctctacttctcaggttaaatctgtatatgtgaaaaatccgcccaagaatgttactcaagc 959 Query: 1050 gcagctgaaaaagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttc 1109 |||||||||| |||||||||| ||||| |||||| ||| ||||||| || ||||| Sbjct: 960 acagctgaaaagactgtttgagcaccatggagaaattgaaaaggttgttcttcctccttc 1019 Query: 1110 aaaagatggtcatgataataggtatggttttgttcacttcaaggaccgtcacatggccat 1169 || || |||||||||||||||||||||||||||||||| |||||| | ||||||||| Sbjct: 1020 aagaggaggtcatgataataggtatggttttgttcactttaaggacaggtccatggccat 1079 Query: 1170 gaaggctgtgaagagcacagagaaatatgagcttgacggtcagctcctggactgctcact 1229 || |||| || ||| |||||||| |||||||||||| |||||| ||||||| |||||||| Sbjct: 1080 gagggctctgcagaacacagagagatatgagcttgatggtcaggtcctggattgctcact 1139 Query: 1230 tgcaaaacctcctgc 1244 ||| ||||||||||| Sbjct: 1140 tgcgaaacctcctgc 1154 Score = 101 bits (51), Expect = 1e-17 Identities = 87/99 (87%) Strand = Plus / Plus Query: 1383 acagcctctactatatgctcccggtgctcctccaggtgcagcaatggttccaatgcttct 1442 ||||||| | || |||||||| | ||||||||||| |||||||||||||||||| | | Sbjct: 1287 acagcctatgctgtatgctccaagagctcctccaggggcagcaatggttccaatgatgtt 1346 Query: 1443 accggatggccgtcttgtatatgttgtacaacagcctgg 1481 ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 1347 accggatggtcgtctcgtatatgttgtacaacagcctgg 1385
>ref|NM_001072634.1| Oryza sativa (japonica cultivar-group) Os12g0136200 (Os12g0136200) mRNA, partial cds Length = 1921 Score = 416 bits (210), Expect = e-112 Identities = 444/522 (85%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 476 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 535 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 536 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 595 Query: 568 gaagtaagaataatgctgggcaagaaagatagtaggggatatgcttttgttactttcaga 627 ||||| ||||| ||| || ||| | ||||| ||||||||||||||||||| ||| ||| Sbjct: 596 gaagtgagaatgatgagaggaaaggacgatagcaggggatatgcttttgttaattttaga 655 Query: 628 actaacgatctggctttgaaggccatcgagaaattgaacaatgcaactttcaagggaaag 687 || || | | |||| || ||||| || | ||||||||||||||| | ||||||||| Sbjct: 656 acaaaaggtttggcattaaaggctgtcaaagaattgaacaatgcaaaactgaagggaaag 715 Query: 688 aggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatgtacctcac 747 || ||| ||||||||||| ||||||||||||||||| ||| ||||||||||||| || Sbjct: 716 cggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatgtaccccat 775 Query: 748 agttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggagtattaaaa 807 |||||| || |||||||||||| ||| | ||| | ||||||||||| |||||||||||| Sbjct: 776 agttggacagatgatgatttcagaaaggttgtggaggaagttggtccaggagtattaaaa 835 Query: 808 gttgatctcattaagggctcacatacagatcgcaatcggggttatggtttcgttgaatac 867 | ||||||||| |||| |||| | || |||||||||||||||||||||| ||||||||| Sbjct: 836 gctgatctcatgaaggtctcaagtgcaaatcgcaatcggggttatggttttgttgaatac 895 Query: 868 tataataatgcatgcgctgagtattcaaggcagaagatgactgcgccaaatttcaaacta 927 || || ||||||| || |||||| |||||||| ||||| || | |||| ||||||||| Sbjct: 896 tacaaccatgcatgtgcagagtatgcaaggcaggagatgtcttccccaacattcaaacta 955 Query: 928 gatacaaatgctcctaatgtcagctgggcagatcctaagaat 969 ||| |||||||||||| |||||||||||||||||||||||| Sbjct: 956 gattcaaatgctcctacagtcagctgggcagatcctaagaat 997 Score = 252 bits (127), Expect = 4e-63 Identities = 223/255 (87%) Strand = Plus / Plus Query: 990 ctctacttcacaggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagg 1049 ||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 1009 ctctacttctcaggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagc 1068 Query: 1050 gcagctgaaaaagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttc 1109 |||||||||| ||||||||||| |||||||||||| ||| ||||||| || ||||| Sbjct: 1069 acagctgaaaaggctgtttgagcaccatggtgaaattgaaaaggttgttcttcctccttc 1128 Query: 1110 aaaagatggtcatgataataggtatggttttgttcacttcaaggaccgtcacatggccat 1169 || || |||||||||||||||||||||||||||||||| |||||| | ||||||||| Sbjct: 1129 aagaggaggtcatgataataggtatggttttgttcactttaaggacagatccatggccat 1188 Query: 1170 gaaggctgtgaagagcacagagaaatatgagcttgacggtcagctcctggactgctcact 1229 || |||| || ||| |||||||| |||||||||||| |||||| ||||||| |||||||| Sbjct: 1189 gagggctctgcagaacacagagagatatgagcttgatggtcaggtcctggattgctcact 1248 Query: 1230 tgcaaaacctcctgc 1244 ||| ||||||||||| Sbjct: 1249 tgcgaaacctcctgc 1263 Score = 109 bits (55), Expect = 4e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 1383 acagcctctactatatgctcccggtgctcctccaggtgcagcaatggttccaatgcttct 1442 ||||||| | || |||||||| | |||||||||||||||||||||||||||||| | | Sbjct: 1396 acagcctatgctgtatgctccaagagctcctccaggtgcagcaatggttccaatgatgtt 1455 Query: 1443 accggatggccgtcttgtatatgttgtacaacagcctgg 1481 ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 1456 accggatggtcgtctcgtatatgttgtacaacagcctgg 1494 Score = 48.1 bits (24), Expect = 0.13 Identities = 30/32 (93%) Strand = Plus / Plus Query: 112 ttgccttggaactttgagctcttcgagatgcc 143 |||||||||||||||||||| ||| ||||||| Sbjct: 155 ttgccttggaactttgagcttttcaagatgcc 186
>gb|AY224581.1| Oryza sativa (japonica cultivar-group) isolate 30848 putative RNA-binding protein mRNA, partial cds Length = 1428 Score = 416 bits (210), Expect = e-112 Identities = 444/522 (85%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 331 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 390 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 391 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 450 Query: 568 gaagtaagaataatgctgggcaagaaagatagtaggggatatgcttttgttactttcaga 627 ||||| ||||| ||| || ||| | ||||| ||||||||||||||||||| ||| ||| Sbjct: 451 gaagtgagaatgatgagaggaaaggacgatagcaggggatatgcttttgttaattttaga 510 Query: 628 actaacgatctggctttgaaggccatcgagaaattgaacaatgcaactttcaagggaaag 687 || || | | |||| || ||||| || | ||||||||||||||| | ||||||||| Sbjct: 511 acaaaaggtttggcattaaaggctgtcaaagaattgaacaatgcaaaactgaagggaaag 570 Query: 688 aggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatgtacctcac 747 || ||| ||||||||||| ||||||||||||||||| ||| ||||||||||||| || Sbjct: 571 cggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatgtaccccat 630 Query: 748 agttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggagtattaaaa 807 |||||| || |||||||||||| ||| | ||| | ||||||||||| |||||||||||| Sbjct: 631 agttggacagatgatgatttcagaaaggttgtggaggaagttggtccaggagtattaaaa 690 Query: 808 gttgatctcattaagggctcacatacagatcgcaatcggggttatggtttcgttgaatac 867 | ||||||||| |||| |||| | || |||||||||||||||||||||| ||||||||| Sbjct: 691 gctgatctcatgaaggtctcaagtgcaaatcgcaatcggggttatggttttgttgaatac 750 Query: 868 tataataatgcatgcgctgagtattcaaggcagaagatgactgcgccaaatttcaaacta 927 || || ||||||| || |||||| |||||||| ||||| || | |||| ||||||||| Sbjct: 751 tacaaccatgcatgtgcagagtatgcaaggcaggagatgtcttccccaacattcaaacta 810 Query: 928 gatacaaatgctcctaatgtcagctgggcagatcctaagaat 969 ||| |||||||||||| |||||||||||||||||||||||| Sbjct: 811 gattcaaatgctcctacagtcagctgggcagatcctaagaat 852 Score = 244 bits (123), Expect = 1e-60 Identities = 222/255 (87%) Strand = Plus / Plus Query: 990 ctctacttcacaggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagg 1049 ||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 864 ctctacttctcaggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagc 923 Query: 1050 gcagctgaaaaagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttc 1109 |||||||||| ||| ||||||| |||||||||||| ||| ||||||| || ||||| Sbjct: 924 acagctgaaaaggctatttgagcaccatggtgaaattgaaaaggttgttcttcctccttc 983 Query: 1110 aaaagatggtcatgataataggtatggttttgttcacttcaaggaccgtcacatggccat 1169 || || |||||||||||||||||||||||||||||||| |||||| | ||||||||| Sbjct: 984 aagaggaggtcatgataataggtatggttttgttcactttaaggacagatccatggccat 1043 Query: 1170 gaaggctgtgaagagcacagagaaatatgagcttgacggtcagctcctggactgctcact 1229 || |||| || ||| |||||||| |||||||||||| |||||| ||||||| |||||||| Sbjct: 1044 gagggctctgcagaacacagagagatatgagcttgatggtcaggtcctggattgctcact 1103 Query: 1230 tgcaaaacctcctgc 1244 ||| ||||||||||| Sbjct: 1104 tgcgaaacctcctgc 1118 Score = 109 bits (55), Expect = 4e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 1383 acagcctctactatatgctcccggtgctcctccaggtgcagcaatggttccaatgcttct 1442 ||||||| | || |||||||| | |||||||||||||||||||||||||||||| | | Sbjct: 1251 acagcctatgctgtatgctccaagagctcctccaggtgcagcaatggttccaatgatgtt 1310 Query: 1443 accggatggccgtcttgtatatgttgtacaacagcctgg 1481 ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 1311 accggatggtcgtctcgtatatgttgtacaacagcctgg 1349 Score = 44.1 bits (22), Expect = 2.0 Identities = 28/30 (93%) Strand = Plus / Plus Query: 114 gccttggaactttgagctcttcgagatgcc 143 |||||||||||||||||| ||| ||||||| Sbjct: 12 gccttggaactttgagcttttcaagatgcc 41
>dbj|AK068700.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160I09, full insert sequence Length = 2840 Score = 416 bits (210), Expect = e-112 Identities = 444/522 (85%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 1418 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 1477 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 1478 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 1537 Query: 568 gaagtaagaataatgctgggcaagaaagatagtaggggatatgcttttgttactttcaga 627 ||||| ||||| ||| || ||| | ||||| ||||||||||||||||||| ||| ||| Sbjct: 1538 gaagtgagaatgatgagaggaaaggacgatagcaggggatatgcttttgttaattttaga 1597 Query: 628 actaacgatctggctttgaaggccatcgagaaattgaacaatgcaactttcaagggaaag 687 || || | | |||| || ||||| || | ||||||||||||||| | ||||||||| Sbjct: 1598 acaaaaggtttggcattaaaggctgtcaaagaattgaacaatgcaaaactgaagggaaag 1657 Query: 688 aggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatgtacctcac 747 || ||| ||||||||||| ||||||||||||||||| ||| ||||||||||||| || Sbjct: 1658 cggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatgtaccccat 1717 Query: 748 agttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggagtattaaaa 807 |||||| || |||||||||||| ||| | ||| | ||||||||||| |||||||||||| Sbjct: 1718 agttggacagatgatgatttcagaaaggttgtggaggaagttggtccaggagtattaaaa 1777 Query: 808 gttgatctcattaagggctcacatacagatcgcaatcggggttatggtttcgttgaatac 867 | ||||||||| |||| |||| | || |||||||||||||||||||||| ||||||||| Sbjct: 1778 gctgatctcatgaaggtctcaagtgcaaatcgcaatcggggttatggttttgttgaatac 1837 Query: 868 tataataatgcatgcgctgagtattcaaggcagaagatgactgcgccaaatttcaaacta 927 || || ||||||| || |||||| |||||||| ||||| || | |||| ||||||||| Sbjct: 1838 tacaaccatgcatgtgcagagtatgcaaggcaggagatgtcttccccaacattcaaacta 1897 Query: 928 gatacaaatgctcctaatgtcagctgggcagatcctaagaat 969 ||| |||||||||||| |||||||||||||||||||||||| Sbjct: 1898 gattcaaatgctcctacagtcagctgggcagatcctaagaat 1939 Score = 252 bits (127), Expect = 4e-63 Identities = 223/255 (87%) Strand = Plus / Plus Query: 990 ctctacttcacaggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagg 1049 ||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 1951 ctctacttctcaggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagc 2010 Query: 1050 gcagctgaaaaagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttc 1109 |||||||||| ||||||||||| |||||||||||| ||| ||||||| || ||||| Sbjct: 2011 acagctgaaaaggctgtttgagcaccatggtgaaattgaaaaggttgttcttcctccttc 2070 Query: 1110 aaaagatggtcatgataataggtatggttttgttcacttcaaggaccgtcacatggccat 1169 || || |||||||||||||||||||||||||||||||| |||||| | ||||||||| Sbjct: 2071 aagaggaggtcatgataataggtatggttttgttcactttaaggacagatccatggccat 2130 Query: 1170 gaaggctgtgaagagcacagagaaatatgagcttgacggtcagctcctggactgctcact 1229 || |||| || ||| |||||||| |||||||||||| |||||| ||||||| |||||||| Sbjct: 2131 gagggctctgcagaacacagagagatatgagcttgatggtcaggtcctggattgctcact 2190 Query: 1230 tgcaaaacctcctgc 1244 ||| ||||||||||| Sbjct: 2191 tgcgaaacctcctgc 2205 Score = 109 bits (55), Expect = 4e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 1383 acagcctctactatatgctcccggtgctcctccaggtgcagcaatggttccaatgcttct 1442 ||||||| | || |||||||| | |||||||||||||||||||||||||||||| | | Sbjct: 2338 acagcctatgctgtatgctccaagagctcctccaggtgcagcaatggttccaatgatgtt 2397 Query: 1443 accggatggccgtcttgtatatgttgtacaacagcctgg 1481 ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 2398 accggatggtcgtctcgtatatgttgtacaacagcctgg 2436 Score = 52.0 bits (26), Expect = 0.008 Identities = 32/34 (94%) Strand = Plus / Plus Query: 110 agttgccttggaactttgagctcttcgagatgcc 143 |||||||||||||||||||||| ||| ||||||| Sbjct: 1095 agttgccttggaactttgagcttttcaagatgcc 1128
>dbj|AK069493.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024M07, full insert sequence Length = 1922 Score = 408 bits (206), Expect = e-110 Identities = 443/522 (84%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 477 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 536 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 537 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 596 Query: 568 gaagtaagaataatgctgggcaagaaagatagtaggggatatgcttttgttactttcaga 627 ||||| ||||| ||| || ||| | ||||| ||||||||||||||||||| ||| ||| Sbjct: 597 gaagtgagaatgatgagaggaaaggacgatagcaggggatatgcttttgttaattttaga 656 Query: 628 actaacgatctggctttgaaggccatcgagaaattgaacaatgcaactttcaagggaaag 687 | || | | |||| || ||||| || | ||||||||||||||| | ||||||||| Sbjct: 657 gcaaaaggtttggcattaaaggctgtcaaagaattgaacaatgcaaaactgaagggaaag 716 Query: 688 aggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatgtacctcac 747 || ||| ||||||||||| ||||||||||||||||| ||| ||||||||||||| || Sbjct: 717 cggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatgtaccccat 776 Query: 748 agttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggagtattaaaa 807 |||||| || |||||||||||| ||| | ||| | ||||||||||| |||||||||||| Sbjct: 777 agttggacagatgatgatttcagaaaggttgtggaggaagttggtccaggagtattaaaa 836 Query: 808 gttgatctcattaagggctcacatacagatcgcaatcggggttatggtttcgttgaatac 867 | ||||||||| |||| |||| | || |||||||||||||||||||||| ||||||||| Sbjct: 837 gctgatctcatgaaggtctcaagtgcaaatcgcaatcggggttatggttttgttgaatac 896 Query: 868 tataataatgcatgcgctgagtattcaaggcagaagatgactgcgccaaatttcaaacta 927 || || ||||||| || |||||| |||||||| ||||| || | |||| ||||||||| Sbjct: 897 tacaaccatgcatgtgcagagtatgcaaggcaggagatgtcttccccaacattcaaacta 956 Query: 928 gatacaaatgctcctaatgtcagctgggcagatcctaagaat 969 ||| |||||||||||| |||||||||||||||||||||||| Sbjct: 957 gattcaaatgctcctacagtcagctgggcagatcctaagaat 998 Score = 252 bits (127), Expect = 4e-63 Identities = 223/255 (87%) Strand = Plus / Plus Query: 990 ctctacttcacaggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagg 1049 ||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 1010 ctctacttctcaggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagc 1069 Query: 1050 gcagctgaaaaagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttc 1109 |||||||||| ||||||||||| |||||||||||| ||| ||||||| || ||||| Sbjct: 1070 acagctgaaaaggctgtttgagcaccatggtgaaattgaaaaggttgttcttcctccttc 1129 Query: 1110 aaaagatggtcatgataataggtatggttttgttcacttcaaggaccgtcacatggccat 1169 || || |||||||||||||||||||||||||||||||| |||||| | ||||||||| Sbjct: 1130 aagaggaggtcatgataataggtatggttttgttcactttaaggacagatccatggccat 1189 Query: 1170 gaaggctgtgaagagcacagagaaatatgagcttgacggtcagctcctggactgctcact 1229 || |||| || ||| |||||||| |||||||||||| |||||| ||||||| |||||||| Sbjct: 1190 gagggctctgcagaacacagagagatatgagcttgatggtcaggtcctggattgctcact 1249 Query: 1230 tgcaaaacctcctgc 1244 ||| ||||||||||| Sbjct: 1250 tgcgaaacctcctgc 1264 Score = 109 bits (55), Expect = 4e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 1383 acagcctctactatatgctcccggtgctcctccaggtgcagcaatggttccaatgcttct 1442 ||||||| | || |||||||| | |||||||||||||||||||||||||||||| | | Sbjct: 1397 acagcctatgctgtatgctccaagagctcctccaggtgcagcaatggttccaatgatgtt 1456 Query: 1443 accggatggccgtcttgtatatgttgtacaacagcctgg 1481 ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 1457 accggatggtcgtctcgtatatgttgtacaacagcctgg 1495 Score = 48.1 bits (24), Expect = 0.13 Identities = 30/32 (93%) Strand = Plus / Plus Query: 112 ttgccttggaactttgagctcttcgagatgcc 143 |||||||||||||||||||| ||| ||||||| Sbjct: 156 ttgccttggaactttgagcttttcaagatgcc 187
>dbj|AK059978.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-B08, full insert sequence Length = 1147 Score = 252 bits (127), Expect = 4e-63 Identities = 223/255 (87%) Strand = Plus / Plus Query: 990 ctctacttcacaggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagg 1049 ||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 235 ctctacttctcaggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagc 294 Query: 1050 gcagctgaaaaagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttc 1109 |||||||||| ||||||||||| |||||||||||| ||| ||||||| || ||||| Sbjct: 295 acagctgaaaaggctgtttgagcaccatggtgaaattgaaaaggttgttcttcctccttc 354 Query: 1110 aaaagatggtcatgataataggtatggttttgttcacttcaaggaccgtcacatggccat 1169 || || |||||||||||||||||||||||||||||||| |||||| | ||||||||| Sbjct: 355 aagaggaggtcatgataataggtatggttttgttcactttaaggacagatccatggccat 414 Query: 1170 gaaggctgtgaagagcacagagaaatatgagcttgacggtcagctcctggactgctcact 1229 || |||| || ||| |||||||| |||||||||||| |||||| ||||||| |||||||| Sbjct: 415 gagggctctgcagaacacagagagatatgagcttgatggtcaggtcctggattgctcact 474 Query: 1230 tgcaaaacctcctgc 1244 ||| ||||||||||| Sbjct: 475 tgcgaaacctcctgc 489 Score = 186 bits (94), Expect = 2e-43 Identities = 190/222 (85%) Strand = Plus / Plus Query: 748 agttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggagtattaaaa 807 |||||| || |||||||||||| ||| | ||| | ||||||||||| |||||||||||| Sbjct: 2 agttggacagatgatgatttcagaaaggttgtggaggaagttggtccaggagtattaaaa 61 Query: 808 gttgatctcattaagggctcacatacagatcgcaatcggggttatggtttcgttgaatac 867 | ||||||||| |||| |||| | || |||||||||||||||||||||| ||||||||| Sbjct: 62 gctgatctcatgaaggtctcaagtgcaaatcgcaatcggggttatggttttgttgaatac 121 Query: 868 tataataatgcatgcgctgagtattcaaggcagaagatgactgcgccaaatttcaaacta 927 || || ||||||| || |||||| |||||||| ||||| || | |||| ||||||||| Sbjct: 122 tacaaccatgcatgtgcagagtatgcaaggcaggagatgtcttccccaacattcaaacta 181 Query: 928 gatacaaatgctcctaatgtcagctgggcagatcctaagaat 969 ||| |||||||||||| |||||||||||||||||||||||| Sbjct: 182 gattcaaatgctcctacagtcagctgggcagatcctaagaat 223 Score = 109 bits (55), Expect = 4e-20 Identities = 88/99 (88%) Strand = Plus / Plus Query: 1383 acagcctctactatatgctcccggtgctcctccaggtgcagcaatggttccaatgcttct 1442 ||||||| | || |||||||| | |||||||||||||||||||||||||||||| | | Sbjct: 622 acagcctatgctgtatgctccaagagctcctccaggtgcagcaatggttccaatgatgtt 681 Query: 1443 accggatggccgtcttgtatatgttgtacaacagcctgg 1481 ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 682 accggatggtcgtctcgtatatgttgtacaacagcctgg 720
>ref|NM_001072237.1| Oryza sativa (japonica cultivar-group) Os11g0139500 (Os11g0139500) mRNA, partial cds Length = 4144 Score = 236 bits (119), Expect = 3e-58 Identities = 221/255 (86%) Strand = Plus / Plus Query: 990 ctctacttcacaggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagg 1049 ||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 1815 ctctacttctcaggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagc 1874 Query: 1050 gcagctgaaaaagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttc 1109 |||||||||| |||||||||| ||||| |||||| ||| ||||||| || ||||| Sbjct: 1875 acagctgaaaagactgtttgagcaccatggagaaattgaaaaggttgttcttcctccttc 1934 Query: 1110 aaaagatggtcatgataataggtatggttttgttcacttcaaggaccgtcacatggccat 1169 || || |||||||||||||||||||||||||||||||| |||||| | ||||||||| Sbjct: 1935 aagaggaggtcatgataataggtatggttttgttcactttaaggacaggtccatggccat 1994 Query: 1170 gaaggctgtgaagagcacagagaaatatgagcttgacggtcagctcctggactgctcact 1229 || |||| || ||| |||||||| |||||||||||| |||||| ||||||| |||||||| Sbjct: 1995 gagggctctgcagaacacagagagatatgagcttgatggtcaggtcctggattgctcact 2054 Query: 1230 tgcaaaacctcctgc 1244 ||| ||||||||||| Sbjct: 2055 tgcgaaacctcctgc 2069 Score = 200 bits (101), Expect = 1e-47 Identities = 164/185 (88%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 722 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 781 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 782 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 841 Query: 568 gaagtaagaataatgctgggcaagaaagatagtaggggatatgcttttgttactttcaga 627 ||||||||||| ||| || ||| | ||||| ||||||||||||||||||| ||| ||| Sbjct: 842 gaagtaagaatgatgagaggaaaggacgatagcaggggatatgcttttgttaattttaga 901 Query: 628 actaa 632 ||||| Sbjct: 902 actaa 906 Score = 133 bits (67), Expect = 3e-27 Identities = 121/139 (87%) Strand = Plus / Plus Query: 680 agggaaagaggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatg 739 |||||||| || ||| ||||||||||| ||||||||||||||||| ||| ||||||||| Sbjct: 1578 agggaaagcggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatg 1637 Query: 740 tacctcacagttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggag 799 |||| || |||||| || |||||||||||| ||| || ||| | ||||||||||| |||| Sbjct: 1638 taccccatagttggacagatgatgatttcagaaaggctgtggaggaagttggtccaggag 1697 Query: 800 tattaaaagttgatctcat 818 ||||||||| ||||||||| Sbjct: 1698 tattaaaagctgatctcat 1716 Score = 101 bits (51), Expect = 1e-17 Identities = 87/99 (87%) Strand = Plus / Plus Query: 1383 acagcctctactatatgctcccggtgctcctccaggtgcagcaatggttccaatgcttct 1442 ||||||| | || |||||||| | ||||||||||| |||||||||||||||||| | | Sbjct: 2202 acagcctatgctgtatgctccaagagctcctccaggggcagcaatggttccaatgatgtt 2261 Query: 1443 accggatggccgtcttgtatatgttgtacaacagcctgg 1481 ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 2262 accggatggtcgtctcgtatatgttgtacaacagcctgg 2300 Score = 87.7 bits (44), Expect = 1e-13 Identities = 74/84 (88%) Strand = Plus / Plus Query: 886 gagtattcaaggcagaagatgactgcgccaaatttcaaactagatacaaatgctcctaat 945 |||||| |||||||| ||||| || | |||| |||||||||||| |||||||||||| Sbjct: 1720 gagtatgcaaggcaggagatgtcttccccaacattcaaactagattcaaatgctcctaca 1779 Query: 946 gtcagctgggcagatcctaagaat 969 |||||||||||||||||||||||| Sbjct: 1780 gtcagctgggcagatcctaagaat 1803 Score = 44.1 bits (22), Expect = 2.0 Identities = 31/34 (91%) Strand = Plus / Plus Query: 110 agttgccttggaactttgagctcttcgagatgcc 143 |||||||| ||||||||||||| ||| ||||||| Sbjct: 402 agttgcctcggaactttgagcttttcaagatgcc 435
>dbj|AK120730.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003B09, full insert sequence Length = 4145 Score = 236 bits (119), Expect = 3e-58 Identities = 221/255 (86%) Strand = Plus / Plus Query: 990 ctctacttcacaggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagg 1049 ||||||||| ||||| |||||||||||||| ||||| |||||||||||||||||||||| Sbjct: 1816 ctctacttctcaggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagc 1875 Query: 1050 gcagctgaaaaagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttc 1109 |||||||||| |||||||||| ||||| |||||| ||| ||||||| || ||||| Sbjct: 1876 acagctgaaaagactgtttgagcaccatggagaaattgaaaaggttgttcttcctccttc 1935 Query: 1110 aaaagatggtcatgataataggtatggttttgttcacttcaaggaccgtcacatggccat 1169 || || |||||||||||||||||||||||||||||||| |||||| | ||||||||| Sbjct: 1936 aagaggaggtcatgataataggtatggttttgttcactttaaggacaggtccatggccat 1995 Query: 1170 gaaggctgtgaagagcacagagaaatatgagcttgacggtcagctcctggactgctcact 1229 || |||| || ||| |||||||| |||||||||||| |||||| ||||||| |||||||| Sbjct: 1996 gagggctctgcagaacacagagagatatgagcttgatggtcaggtcctggattgctcact 2055 Query: 1230 tgcaaaacctcctgc 1244 ||| ||||||||||| Sbjct: 2056 tgcgaaacctcctgc 2070 Score = 200 bits (101), Expect = 1e-47 Identities = 164/185 (88%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 723 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 782 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 783 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 842 Query: 568 gaagtaagaataatgctgggcaagaaagatagtaggggatatgcttttgttactttcaga 627 ||||||||||| ||| || ||| | ||||| ||||||||||||||||||| ||| ||| Sbjct: 843 gaagtaagaatgatgagaggaaaggacgatagcaggggatatgcttttgttaattttaga 902 Query: 628 actaa 632 ||||| Sbjct: 903 actaa 907 Score = 133 bits (67), Expect = 3e-27 Identities = 121/139 (87%) Strand = Plus / Plus Query: 680 agggaaagaggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatg 739 |||||||| || ||| ||||||||||| ||||||||||||||||| ||| ||||||||| Sbjct: 1579 agggaaagcggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatg 1638 Query: 740 tacctcacagttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggag 799 |||| || |||||| || |||||||||||| ||| || ||| | ||||||||||| |||| Sbjct: 1639 taccccatagttggacagatgatgatttcagaaaggctgtggaggaagttggtccaggag 1698 Query: 800 tattaaaagttgatctcat 818 ||||||||| ||||||||| Sbjct: 1699 tattaaaagctgatctcat 1717 Score = 101 bits (51), Expect = 1e-17 Identities = 87/99 (87%) Strand = Plus / Plus Query: 1383 acagcctctactatatgctcccggtgctcctccaggtgcagcaatggttccaatgcttct 1442 ||||||| | || |||||||| | ||||||||||| |||||||||||||||||| | | Sbjct: 2203 acagcctatgctgtatgctccaagagctcctccaggggcagcaatggttccaatgatgtt 2262 Query: 1443 accggatggccgtcttgtatatgttgtacaacagcctgg 1481 ||||||||| ||||| ||||||||||||||||||||||| Sbjct: 2263 accggatggtcgtctcgtatatgttgtacaacagcctgg 2301 Score = 87.7 bits (44), Expect = 1e-13 Identities = 74/84 (88%) Strand = Plus / Plus Query: 886 gagtattcaaggcagaagatgactgcgccaaatttcaaactagatacaaatgctcctaat 945 |||||| |||||||| ||||| || | |||| |||||||||||| |||||||||||| Sbjct: 1721 gagtatgcaaggcaggagatgtcttccccaacattcaaactagattcaaatgctcctaca 1780 Query: 946 gtcagctgggcagatcctaagaat 969 |||||||||||||||||||||||| Sbjct: 1781 gtcagctgggcagatcctaagaat 1804 Score = 44.1 bits (22), Expect = 2.0 Identities = 31/34 (91%) Strand = Plus / Plus Query: 110 agttgccttggaactttgagctcttcgagatgcc 143 |||||||| ||||||||||||| ||| ||||||| Sbjct: 403 agttgcctcggaactttgagcttttcaagatgcc 436
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 196 bits (99), Expect = 2e-46 Identities = 186/215 (86%) Strand = Plus / Plus Query: 1000 caggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagggcagctgaaa 1059 ||||| |||||||||||||| ||||| |||||||||||||||||||||| ||||||||| Sbjct: 1757409 caggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagcacagctgaaa 1757468 Query: 1060 aagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttcaaaagatggt 1119 | ||||||||||| |||||||||||| ||| ||||||| || ||||||| || ||| Sbjct: 1757469 aggctgtttgagcaccatggtgaaattgaaaaggttgttcttcctccttcaagaggaggt 1757528 Query: 1120 catgataataggtatggttttgttcacttcaaggaccgtcacatggccatgaaggctgtg 1179 ||||||||||||||||||||||||||||| |||||| | ||||||||||| |||| || Sbjct: 1757529 catgataataggtatggttttgttcactttaaggacagatccatggccatgagggctctg 1757588 Query: 1180 aagagcacagagaaatatgagcttgacggtcagct 1214 ||| |||||||| |||||||||||| ||| |||| Sbjct: 1757589 cagaacacagagagatatgagcttgatggtgagct 1757623 Score = 167 bits (84), Expect = 2e-37 Identities = 117/128 (91%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 1755998 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 1756057 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 1756058 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 1756117 Query: 568 gaagtaag 575 |||||||| Sbjct: 1756118 gaagtaag 1756125 Score = 139 bits (70), Expect = 5e-29 Identities = 118/134 (88%) Strand = Plus / Plus Query: 836 atcgcaatcggggttatggtttcgttgaatactataataatgcatgcgctgagtattcaa 895 |||||||||||||||||||||| ||||||||||| || ||||||| || |||||| ||| Sbjct: 1757155 atcgcaatcggggttatggttttgttgaatactacaaccatgcatgtgcagagtatgcaa 1757214 Query: 896 ggcagaagatgactgcgccaaatttcaaactagatacaaatgctcctaatgtcagctggg 955 ||||| ||||| || | |||| |||||||||||| |||||||||||| |||||||||| Sbjct: 1757215 ggcaggagatgtcttccccaacattcaaactagattcaaatgctcctacagtcagctggg 1757274 Query: 956 cagatcctaagaat 969 |||||||||||||| Sbjct: 1757275 cagatcctaagaat 1757288 Score = 127 bits (64), Expect = 2e-25 Identities = 124/144 (86%) Strand = Plus / Plus Query: 680 agggaaagaggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatg 739 |||||||| || ||| ||||||||||| ||||||||||||||||| ||| ||||||||| Sbjct: 1756921 agggaaagcggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatg 1756980 Query: 740 tacctcacagttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggag 799 |||| || |||||| || |||||||||||| ||| | ||| | ||||||||||| |||| Sbjct: 1756981 taccccatagttggacagatgatgatttcagaaaggttgtggaggaagttggtccaggag 1757040 Query: 800 tattaaaagttgatctcattaagg 823 ||||||||| ||||||||| |||| Sbjct: 1757041 tattaaaagctgatctcatgaagg 1757064 Score = 83.8 bits (42), Expect = 2e-12 Identities = 57/62 (91%) Strand = Plus / Plus Query: 1408 gctcctccaggtgcagcaatggttccaatgcttctaccggatggccgtcttgtatatgtt 1467 |||||||||||||||||||||||||||||| | |||||||||| ||||| ||||||||| Sbjct: 1758042 gctcctccaggtgcagcaatggttccaatgatgttaccggatggtcgtctcgtatatgtt 1758101 Query: 1468 gt 1469 || Sbjct: 1758102 gt 1758103 Score = 52.0 bits (26), Expect = 0.008 Identities = 32/34 (94%) Strand = Plus / Plus Query: 110 agttgccttggaactttgagctcttcgagatgcc 143 |||||||||||||||||||||| ||| ||||||| Sbjct: 1755675 agttgccttggaactttgagcttttcaagatgcc 1755708 Score = 52.0 bits (26), Expect = 0.008 Identities = 35/38 (92%) Strand = Plus / Plus Query: 1207 ggtcagctcctggactgctcacttgcaaaacctcctgc 1244 |||||| ||||||| ||||||||||| ||||||||||| Sbjct: 1757737 ggtcaggtcctggattgctcacttgcgaaacctcctgc 1757774 Score = 46.1 bits (23), Expect = 0.51 Identities = 32/35 (91%) Strand = Plus / Plus Query: 595 gatagtaggggatatgcttttgttactttcagaac 629 ||||| ||||||||||||||||||| ||| ||||| Sbjct: 1756227 gatagcaggggatatgcttttgttaattttagaac 1756261 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1782 catgcaactatgccacatcatca 1804 ||||||||||||||||||||||| Sbjct: 13745757 catgcaactatgccacatcatca 13745735 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 3185868 tcttcttcctcctcctcctct 3185848 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 19116457 ctcttcttcctcctcctcctc 19116437 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 21250347 tcttcttcctcctcctcctct 21250327 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 24495487 ctcttcttcctcctcctcctc 24495507
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 196 bits (99), Expect = 2e-46 Identities = 186/215 (86%) Strand = Plus / Minus Query: 1000 caggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagggcagctgaaa 1059 ||||| |||||||||||||| ||||| |||||||||||||||||||||| ||||||||| Sbjct: 83074 caggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagcacagctgaaa 83015 Query: 1060 aagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttcaaaagatggt 1119 | ||||||||||| |||||||||||| ||| ||||||| || ||||||| || ||| Sbjct: 83014 aggctgtttgagcaccatggtgaaattgaaaaggttgttcttcctccttcaagaggaggt 82955 Query: 1120 catgataataggtatggttttgttcacttcaaggaccgtcacatggccatgaaggctgtg 1179 ||||||||||||||||||||||||||||| |||||| | ||||||||||| |||| || Sbjct: 82954 catgataataggtatggttttgttcactttaaggacagatccatggccatgagggctctg 82895 Query: 1180 aagagcacagagaaatatgagcttgacggtcagct 1214 ||| |||||||| |||||||||||| ||| |||| Sbjct: 82894 cagaacacagagagatatgagcttgatggtgagct 82860 Score = 167 bits (84), Expect = 2e-37 Identities = 117/128 (91%) Strand = Plus / Minus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 84485 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 84426 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 84425 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 84366 Query: 568 gaagtaag 575 |||||||| Sbjct: 84365 gaagtaag 84358 Score = 139 bits (70), Expect = 5e-29 Identities = 118/134 (88%) Strand = Plus / Minus Query: 836 atcgcaatcggggttatggtttcgttgaatactataataatgcatgcgctgagtattcaa 895 |||||||||||||||||||||| ||||||||||| || ||||||| || |||||| ||| Sbjct: 83328 atcgcaatcggggttatggttttgttgaatactacaaccatgcatgtgcagagtatgcaa 83269 Query: 896 ggcagaagatgactgcgccaaatttcaaactagatacaaatgctcctaatgtcagctggg 955 ||||| ||||| || | |||| |||||||||||| |||||||||||| |||||||||| Sbjct: 83268 ggcaggagatgtcttccccaacattcaaactagattcaaatgctcctacagtcagctggg 83209 Query: 956 cagatcctaagaat 969 |||||||||||||| Sbjct: 83208 cagatcctaagaat 83195 Score = 127 bits (64), Expect = 2e-25 Identities = 124/144 (86%) Strand = Plus / Minus Query: 680 agggaaagaggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatg 739 |||||||| || ||| ||||||||||| ||||||||||||||||| ||| ||||||||| Sbjct: 83562 agggaaagcggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatg 83503 Query: 740 tacctcacagttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggag 799 |||| || |||||| || |||||||||||| ||| | ||| | ||||||||||| |||| Sbjct: 83502 taccccatagttggacagatgatgatttcagaaaggttgtggaggaagttggtccaggag 83443 Query: 800 tattaaaagttgatctcattaagg 823 ||||||||| ||||||||| |||| Sbjct: 83442 tattaaaagctgatctcatgaagg 83419 Score = 83.8 bits (42), Expect = 2e-12 Identities = 57/62 (91%) Strand = Plus / Minus Query: 1408 gctcctccaggtgcagcaatggttccaatgcttctaccggatggccgtcttgtatatgtt 1467 |||||||||||||||||||||||||||||| | |||||||||| ||||| ||||||||| Sbjct: 82441 gctcctccaggtgcagcaatggttccaatgatgttaccggatggtcgtctcgtatatgtt 82382 Query: 1468 gt 1469 || Sbjct: 82381 gt 82380 Score = 52.0 bits (26), Expect = 0.008 Identities = 35/38 (92%) Strand = Plus / Minus Query: 1207 ggtcagctcctggactgctcacttgcaaaacctcctgc 1244 |||||| ||||||| ||||||||||| ||||||||||| Sbjct: 82746 ggtcaggtcctggattgctcacttgcgaaacctcctgc 82709 Score = 52.0 bits (26), Expect = 0.008 Identities = 32/34 (94%) Strand = Plus / Minus Query: 110 agttgccttggaactttgagctcttcgagatgcc 143 |||||||||||||||||||||| ||| ||||||| Sbjct: 84808 agttgccttggaactttgagcttttcaagatgcc 84775 Score = 46.1 bits (23), Expect = 0.51 Identities = 32/35 (91%) Strand = Plus / Minus Query: 595 gatagtaggggatatgcttttgttactttcagaac 629 ||||| ||||||||||||||||||| ||| ||||| Sbjct: 84256 gatagcaggggatatgcttttgttaattttagaac 84222
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 196 bits (99), Expect = 2e-46 Identities = 186/215 (86%) Strand = Plus / Minus Query: 1000 caggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagggcagctgaaa 1059 ||||| |||||||||||||| ||||| |||||||||||||||||||||| ||||||||| Sbjct: 9512 caggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagcacagctgaaa 9453 Query: 1060 aagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttcaaaagatggt 1119 | ||||||||||| |||||||||||| ||| ||||||| || ||||||| || ||| Sbjct: 9452 aggctgtttgagcaccatggtgaaattgaaaaggttgttcttcctccttcaagaggaggt 9393 Query: 1120 catgataataggtatggttttgttcacttcaaggaccgtcacatggccatgaaggctgtg 1179 ||||||||||||||||||||||||||||| |||||| | ||||||||||| |||| || Sbjct: 9392 catgataataggtatggttttgttcactttaaggacagatccatggccatgagggctctg 9333 Query: 1180 aagagcacagagaaatatgagcttgacggtcagct 1214 ||| |||||||| |||||||||||| ||| |||| Sbjct: 9332 cagaacacagagagatatgagcttgatggtgagct 9298 Score = 167 bits (84), Expect = 2e-37 Identities = 117/128 (91%) Strand = Plus / Minus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 10923 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 10864 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 10863 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 10804 Query: 568 gaagtaag 575 |||||||| Sbjct: 10803 gaagtaag 10796 Score = 139 bits (70), Expect = 5e-29 Identities = 118/134 (88%) Strand = Plus / Minus Query: 836 atcgcaatcggggttatggtttcgttgaatactataataatgcatgcgctgagtattcaa 895 |||||||||||||||||||||| ||||||||||| || ||||||| || |||||| ||| Sbjct: 9766 atcgcaatcggggttatggttttgttgaatactacaaccatgcatgtgcagagtatgcaa 9707 Query: 896 ggcagaagatgactgcgccaaatttcaaactagatacaaatgctcctaatgtcagctggg 955 ||||| ||||| || | |||| |||||||||||| |||||||||||| |||||||||| Sbjct: 9706 ggcaggagatgtcttccccaacattcaaactagattcaaatgctcctacagtcagctggg 9647 Query: 956 cagatcctaagaat 969 |||||||||||||| Sbjct: 9646 cagatcctaagaat 9633 Score = 127 bits (64), Expect = 2e-25 Identities = 124/144 (86%) Strand = Plus / Minus Query: 680 agggaaagaggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatg 739 |||||||| || ||| ||||||||||| ||||||||||||||||| ||| ||||||||| Sbjct: 10000 agggaaagcggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatg 9941 Query: 740 tacctcacagttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggag 799 |||| || |||||| || |||||||||||| ||| | ||| | ||||||||||| |||| Sbjct: 9940 taccccatagttggacagatgatgatttcagaaaggttgtggaggaagttggtccaggag 9881 Query: 800 tattaaaagttgatctcattaagg 823 ||||||||| ||||||||| |||| Sbjct: 9880 tattaaaagctgatctcatgaagg 9857 Score = 83.8 bits (42), Expect = 2e-12 Identities = 57/62 (91%) Strand = Plus / Minus Query: 1408 gctcctccaggtgcagcaatggttccaatgcttctaccggatggccgtcttgtatatgtt 1467 |||||||||||||||||||||||||||||| | |||||||||| ||||| ||||||||| Sbjct: 8879 gctcctccaggtgcagcaatggttccaatgatgttaccggatggtcgtctcgtatatgtt 8820 Query: 1468 gt 1469 || Sbjct: 8819 gt 8818 Score = 52.0 bits (26), Expect = 0.008 Identities = 35/38 (92%) Strand = Plus / Minus Query: 1207 ggtcagctcctggactgctcacttgcaaaacctcctgc 1244 |||||| ||||||| ||||||||||| ||||||||||| Sbjct: 9184 ggtcaggtcctggattgctcacttgcgaaacctcctgc 9147 Score = 52.0 bits (26), Expect = 0.008 Identities = 32/34 (94%) Strand = Plus / Minus Query: 110 agttgccttggaactttgagctcttcgagatgcc 143 |||||||||||||||||||||| ||| ||||||| Sbjct: 11246 agttgccttggaactttgagcttttcaagatgcc 11213 Score = 46.1 bits (23), Expect = 0.51 Identities = 32/35 (91%) Strand = Plus / Minus Query: 595 gatagtaggggatatgcttttgttactttcagaac 629 ||||| ||||||||||||||||||| ||| ||||| Sbjct: 10694 gatagcaggggatatgcttttgttaattttagaac 10660
>gb|AY108870.1| Zea mays PCO113432 mRNA sequence Length = 661 Score = 184 bits (93), Expect = 9e-43 Identities = 297/365 (81%) Strand = Plus / Plus Query: 606 atatgcttttgttactttcagaactaacgatctggctttgaaggccatcgagaaattgaa 665 |||||||||| ||| |||||||||||| || ||||||| ||||||||| | || |||| Sbjct: 242 atatgcttttattaatttcagaactaaagagatggctttaaaggccatccaaaagttgag 301 Query: 666 caatgcaactttcaagggaaagaggctaaaagtttcttcctcccaggctaagaacaagct 725 |||| | | |||||||| | | |||||||||| ||||| ||||||||||| | ||| Sbjct: 302 caataaagacctaaagggaaaaaagataaaagtttcatcctctcaggctaagaataggct 361 Query: 726 gtttgttggaaatgtacctcacagttggtcacatgatgatttcacaaaagcagtgaaaga 785 ||| |||| |||||||| || |||| ||| ||||||||||| || |||||| |||| Sbjct: 362 ttttattgggaatgtaccccatgattggacacctgatgatttcaaaaccgcagtggaaga 421 Query: 786 agttggtcctggagtattaaaagttgatctcattaagggctcacatacagatcgcaatcg 845 ||||||||||||||| ||||||||||||||||| |||| || ||| ||||||| Sbjct: 422 agttggtcctggagttttaaaagttgatctcatgaaggcaccaggctcaggtcgcaataa 481 Query: 846 gggttatggtttcgttgaatactataataatgcatgcgctgagtattcaaggcagaagat 905 ||||||||| || |||||||||| || | ||||| || |||||| | | ||||||||| Sbjct: 482 gggttatggctttattgaatactacaaccaggcatgtgcagagtatgctaagcagaagat 541 Query: 906 gactgcgccaaatttcaaactagatacaaatgctcctaatgtcagctgggcagatcctaa 965 | || | ||| | ||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct: 542 gtctactccagaattcaaactagatacaaatgctcctactgtcagctgggcagatcataa 601 Query: 966 gaatg 970 ||||| Sbjct: 602 gaatg 606 Score = 91.7 bits (46), Expect = 1e-14 Identities = 88/102 (86%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| | Sbjct: 87 aagcatgctgagcttcttgctcttcctcctcatggagctgaagtttatgttggggggctt 146 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaa 549 ||| |||| ||||||||||| |||||| |||||| |||| Sbjct: 147 tcctctgatgtatcttctgaagatctcaaacaactatttgaa 188 Score = 60.0 bits (30), Expect = 3e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 991 tctacttcacaggtcaaatctgtatatgtcaaaaacct 1028 |||||||||||||| |||||| |||||||||||||||| Sbjct: 621 tctacttcacaggttaaatctctatatgtcaaaaacct 658
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 180 bits (91), Expect = 1e-41 Identities = 184/215 (85%) Strand = Plus / Plus Query: 1000 caggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagggcagctgaaa 1059 ||||| |||||||||||||| ||||| |||||||||||||||||||||| ||||||||| Sbjct: 35248 caggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagcacagctgaaa 35307 Query: 1060 aagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttcaaaagatggt 1119 | |||||||||| ||||| |||||| ||| ||||||| || ||||||| || ||| Sbjct: 35308 agactgtttgagcaccatggagaaattgaaaaggttgttcttcctccttcaagaggaggt 35367 Query: 1120 catgataataggtatggttttgttcacttcaaggaccgtcacatggccatgaaggctgtg 1179 ||||||||||||||||||||||||||||| |||||| | ||||||||||| |||| || Sbjct: 35368 catgataataggtatggttttgttcactttaaggacaggtccatggccatgagggctctg 35427 Query: 1180 aagagcacagagaaatatgagcttgacggtcagct 1214 ||| |||||||| |||||||||||| ||| |||| Sbjct: 35428 cagaacacagagagatatgagcttgatggtgagct 35462 Score = 167 bits (84), Expect = 2e-37 Identities = 117/128 (91%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 33824 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 33883 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 33884 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 33943 Query: 568 gaagtaag 575 |||||||| Sbjct: 33944 gaagtaag 33951 Score = 139 bits (70), Expect = 5e-29 Identities = 118/134 (88%) Strand = Plus / Plus Query: 836 atcgcaatcggggttatggtttcgttgaatactataataatgcatgcgctgagtattcaa 895 |||||||||||||||||||||| ||||||||||| || ||||||| || |||||| ||| Sbjct: 34996 atcgcaatcggggttatggttttgttgaatactacaaccatgcatgtgcagagtatgcaa 35055 Query: 896 ggcagaagatgactgcgccaaatttcaaactagatacaaatgctcctaatgtcagctggg 955 ||||| ||||| || | |||| |||||||||||| |||||||||||| |||||||||| Sbjct: 35056 ggcaggagatgtcttccccaacattcaaactagattcaaatgctcctacagtcagctggg 35115 Query: 956 cagatcctaagaat 969 |||||||||||||| Sbjct: 35116 cagatcctaagaat 35129 Score = 135 bits (68), Expect = 7e-28 Identities = 125/144 (86%) Strand = Plus / Plus Query: 680 agggaaagaggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatg 739 |||||||| || ||| ||||||||||| ||||||||||||||||| ||| ||||||||| Sbjct: 34762 agggaaagcggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatg 34821 Query: 740 tacctcacagttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggag 799 |||| || |||||| || |||||||||||| ||| || ||| | ||||||||||| |||| Sbjct: 34822 taccccatagttggacagatgatgatttcagaaaggctgtggaggaagttggtccaggag 34881 Query: 800 tattaaaagttgatctcattaagg 823 ||||||||| ||||||||| |||| Sbjct: 34882 tattaaaagctgatctcatgaagg 34905 Score = 75.8 bits (38), Expect = 6e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 1408 gctcctccaggtgcagcaatggttccaatgcttctaccggatggccgtcttgtatatgtt 1467 ||||||||||| |||||||||||||||||| | |||||||||| ||||| ||||||||| Sbjct: 35848 gctcctccaggggcagcaatggttccaatgatgttaccggatggtcgtctcgtatatgtt 35907 Query: 1468 gt 1469 || Sbjct: 35908 gt 35909 Score = 52.0 bits (26), Expect = 0.008 Identities = 35/38 (92%) Strand = Plus / Plus Query: 595 gatagtaggggatatgcttttgttactttcagaactaa 632 ||||| ||||||||||||||||||| ||| |||||||| Sbjct: 34053 gatagcaggggatatgcttttgttaattttagaactaa 34090 Score = 52.0 bits (26), Expect = 0.008 Identities = 35/38 (92%) Strand = Plus / Plus Query: 1207 ggtcagctcctggactgctcacttgcaaaacctcctgc 1244 |||||| ||||||| ||||||||||| ||||||||||| Sbjct: 35543 ggtcaggtcctggattgctcacttgcgaaacctcctgc 35580 Score = 44.1 bits (22), Expect = 2.0 Identities = 31/34 (91%) Strand = Plus / Plus Query: 110 agttgccttggaactttgagctcttcgagatgcc 143 |||||||| ||||||||||||| ||| ||||||| Sbjct: 33504 agttgcctcggaactttgagcttttcaagatgcc 33537
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 180 bits (91), Expect = 1e-41 Identities = 184/215 (85%) Strand = Plus / Plus Query: 1000 caggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagggcagctgaaa 1059 ||||| |||||||||||||| ||||| |||||||||||||||||||||| ||||||||| Sbjct: 1817418 caggttaaatctgtatatgtgaaaaatctgcccaagaatgttactcaagcacagctgaaa 1817477 Query: 1060 aagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttcaaaagatggt 1119 | |||||||||| ||||| |||||| ||| ||||||| || ||||||| || ||| Sbjct: 1817478 agactgtttgagcaccatggagaaattgaaaaggttgttcttcctccttcaagaggaggt 1817537 Query: 1120 catgataataggtatggttttgttcacttcaaggaccgtcacatggccatgaaggctgtg 1179 ||||||||||||||||||||||||||||| |||||| | ||||||||||| |||| || Sbjct: 1817538 catgataataggtatggttttgttcactttaaggacaggtccatggccatgagggctctg 1817597 Query: 1180 aagagcacagagaaatatgagcttgacggtcagct 1214 ||| |||||||| |||||||||||| ||| |||| Sbjct: 1817598 cagaacacagagagatatgagcttgatggtgagct 1817632 Score = 167 bits (84), Expect = 2e-37 Identities = 117/128 (91%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct: 1815994 aagcatgctgagcttcttgctcttcctccccatggttctgaagtatatgttggaggcatc 1816053 Query: 508 tccagcgatgcatcttctgaaggtctcaagaaactatgtgaaccaattggcgaagttgtg 567 ||||| |||| ||||||||||| ||| |||| ||||||||||||| |||| ||||||||| Sbjct: 1816054 tccagtgatgtatcttctgaagatctgaagagactatgtgaaccagttggagaagttgtg 1816113 Query: 568 gaagtaag 575 |||||||| Sbjct: 1816114 gaagtaag 1816121 Score = 139 bits (70), Expect = 5e-29 Identities = 118/134 (88%) Strand = Plus / Plus Query: 836 atcgcaatcggggttatggtttcgttgaatactataataatgcatgcgctgagtattcaa 895 |||||||||||||||||||||| ||||||||||| || ||||||| || |||||| ||| Sbjct: 1817166 atcgcaatcggggttatggttttgttgaatactacaaccatgcatgtgcagagtatgcaa 1817225 Query: 896 ggcagaagatgactgcgccaaatttcaaactagatacaaatgctcctaatgtcagctggg 955 ||||| ||||| || | |||| |||||||||||| |||||||||||| |||||||||| Sbjct: 1817226 ggcaggagatgtcttccccaacattcaaactagattcaaatgctcctacagtcagctggg 1817285 Query: 956 cagatcctaagaat 969 |||||||||||||| Sbjct: 1817286 cagatcctaagaat 1817299 Score = 135 bits (68), Expect = 7e-28 Identities = 125/144 (86%) Strand = Plus / Plus Query: 680 agggaaagaggctaaaagtttcttcctcccaggctaagaacaagctgtttgttggaaatg 739 |||||||| || ||| ||||||||||| ||||||||||||||||| ||| ||||||||| Sbjct: 1816932 agggaaagcggataagggtttcttcctcgcaggctaagaacaagctttttattggaaatg 1816991 Query: 740 tacctcacagttggtcacatgatgatttcacaaaagcagtgaaagaagttggtcctggag 799 |||| || |||||| || |||||||||||| ||| || ||| | ||||||||||| |||| Sbjct: 1816992 taccccatagttggacagatgatgatttcagaaaggctgtggaggaagttggtccaggag 1817051 Query: 800 tattaaaagttgatctcattaagg 823 ||||||||| ||||||||| |||| Sbjct: 1817052 tattaaaagctgatctcatgaagg 1817075 Score = 75.8 bits (38), Expect = 6e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 1408 gctcctccaggtgcagcaatggttccaatgcttctaccggatggccgtcttgtatatgtt 1467 ||||||||||| |||||||||||||||||| | |||||||||| ||||| ||||||||| Sbjct: 1818018 gctcctccaggggcagcaatggttccaatgatgttaccggatggtcgtctcgtatatgtt 1818077 Query: 1468 gt 1469 || Sbjct: 1818078 gt 1818079 Score = 52.0 bits (26), Expect = 0.008 Identities = 35/38 (92%) Strand = Plus / Plus Query: 595 gatagtaggggatatgcttttgttactttcagaactaa 632 ||||| ||||||||||||||||||| ||| |||||||| Sbjct: 1816223 gatagcaggggatatgcttttgttaattttagaactaa 1816260 Score = 52.0 bits (26), Expect = 0.008 Identities = 35/38 (92%) Strand = Plus / Plus Query: 1207 ggtcagctcctggactgctcacttgcaaaacctcctgc 1244 |||||| ||||||| ||||||||||| ||||||||||| Sbjct: 1817713 ggtcaggtcctggattgctcacttgcgaaacctcctgc 1817750 Score = 44.1 bits (22), Expect = 2.0 Identities = 31/34 (91%) Strand = Plus / Plus Query: 110 agttgccttggaactttgagctcttcgagatgcc 143 |||||||| ||||||||||||| ||| ||||||| Sbjct: 1815674 agttgcctcggaactttgagcttttcaagatgcc 1815707 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 26567223 ctcttcttcctcctcctcctct 26567244 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 25921916 ctcttcttcctcctcctcctc 25921896 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 25925247 ctcttcttcctcctcctcctc 25925227
>gb|BT018426.1| Zea mays clone EL01N0362D09.d mRNA sequence Length = 1545 Score = 107 bits (54), Expect = 2e-19 Identities = 212/262 (80%), Gaps = 2/262 (0%) Strand = Plus / Plus Query: 990 ctctacttcacaggtcaaatctgtatatgtcaaaaacctgcccaagaatgttactcaagg 1049 ||||||| ||||||| ||||| ||||||| ||||||||||||||| ||||||||||| Sbjct: 557 ctctactgcacaggttaaatcactatatgtaaaaaacctgcccaaggctgttactcaaga 616 Query: 1050 gcagctgaaaaagctgtttgagcgtcatggtgaaattataaaaattgttctccccccttc 1109 || |||||||| || ||||||| | ||| ||| ||| ||| ||||| | || ||| | Sbjct: 617 acaactgaaaaaactatttgagcaccttggagaagttacaaaggttgttattcctcctgc 676 Query: 1110 aaaagatggtcatgataataggtatggttttgttcacttcaaggaccgtcacatggccat 1169 ||||| ||||||||| ||| | |||||||||||||||||||| || || |||||| || Sbjct: 677 aaaagctggtcatgaaaatcgatatggttttgttcacttcaaagaacgatccatggctat 736 Query: 1170 gaaggctgt-gaagagcacagagaaatatgagcttgacggtcagctcctggactgctcac 1228 ||||||| | ||||| ||| |||| || || ||||||||||| || |||| || |||| Sbjct: 737 gaaggctctggaaga-cactgagagattcgaacttgacggtcaccttttggattgttcac 795 Query: 1229 ttgcaaaacctcctgccgataa 1250 ||||||| |||| ||| ||||| Sbjct: 796 ttgcaaagcctcttgctgataa 817 Score = 89.7 bits (45), Expect = 4e-14 Identities = 54/57 (94%) Strand = Plus / Plus Query: 451 catgctgaacttcttgctcttcctcctcatggatctgaagtatatgttgggggcatc 507 |||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct: 30 catgatgaacttcttgctcttcctcctcatggatccgaagtttatgttgggggcatc 86 Score = 77.8 bits (39), Expect = 1e-10 Identities = 51/55 (92%) Strand = Plus / Plus Query: 919 ttcaaactagatacaaatgctcctaatgtcagctgggcagatcctaagaatggtg 973 ||||||||||||| |||||| ||||||||||| ||||||||| |||||||||||| Sbjct: 492 ttcaaactagataaaaatgcccctaatgtcagttgggcagatactaagaatggtg 546 Score = 69.9 bits (35), Expect = 3e-08 Identities = 95/115 (82%) Strand = Plus / Plus Query: 607 tatgcttttgttactttcagaactaacgatctggctttgaaggccatcgagaaattgaac 666 ||||| ||||| | |||||||||||| || ||||||| ||||||||| |||| |||||| Sbjct: 180 tatgcctttgtcaatttcagaactaaagagctggcttcaaaggccatccagaagttgaac 239 Query: 667 aatgcaactttcaagggaaagaggctaaaagtttcttcctcccaggctaagaaca 721 ||| | | | |||||||||| | ||| |||||||||||| |||||||| |||| Sbjct: 240 aataaagatctaaagggaaagaagataagagtttcttcctcacaggctaaaaaca 294 Score = 56.0 bits (28), Expect = 5e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 1396 tatgctcccggtgctcctccaggtgcagcaatggttccaatgcttctaccggatggccgt 1455 |||| ||| ||||||||||||||| | ||||| | |||||| ||||||| ||||| ||| Sbjct: 1008 tatgttccaggtgctcctccaggttcgacaatgatcccaatggttctaccagatggtcgt 1067 Query: 1456 cttgtata 1463 |||||||| Sbjct: 1068 cttgtata 1075
>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence Length = 124050 Score = 79.8 bits (40), Expect = 4e-11 Identities = 61/68 (89%) Strand = Plus / Plus Query: 1761 ccactatctatttttcctcttcatgcaactatgccacatcatcaagtcatgcatgtagtc 1820 |||||| ||| ||||||| |||||||||| ||| ||||||||||||||||||||| |||| Sbjct: 110472 ccactagctaattttcctattcatgcaacaatggcacatcatcaagtcatgcatggagtc 110531 Query: 1821 atgagtta 1828 || ||||| Sbjct: 110532 ataagtta 110539
>dbj|AP004939.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17M09, TM0105, complete sequence Length = 127990 Score = 63.9 bits (32), Expect = 2e-06 Identities = 41/44 (93%) Strand = Plus / Plus Query: 448 aagcatgctgaacttcttgctcttcctcctcatggatctgaagt 491 ||||||| |||||||||||| |||||||||||||| |||||||| Sbjct: 71452 aagcatgatgaacttcttgcccttcctcctcatggttctgaagt 71495
>gb|AC144389.22| Medicago truncatula clone mth2-25e14, complete sequence Length = 127170 Score = 58.0 bits (29), Expect = 1e-04 Identities = 44/49 (89%) Strand = Plus / Plus Query: 443 gagagaagcatgctgaacttcttgctcttcctcctcatggatctgaagt 491 |||||||||||| |||||||||| | | |||||||||||| |||||||| Sbjct: 112155 gagagaagcatgatgaacttctttcccgtcctcctcatgggtctgaagt 112203
>gb|AC150443.2| Medicago truncatula chromosome 7 BAC clone mth2-71o19, complete sequence Length = 132097 Score = 58.0 bits (29), Expect = 1e-04 Identities = 44/49 (89%) Strand = Plus / Plus Query: 443 gagagaagcatgctgaacttcttgctcttcctcctcatggatctgaagt 491 |||||||||||| |||||||||| | | |||||||||||| |||||||| Sbjct: 6302 gagagaagcatgatgaacttctttcccgtcctcctcatgggtctgaagt 6350
>emb|BX826993.1|CNS0A37N Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB84ZD12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 504 Score = 58.0 bits (29), Expect = 1e-04 Identities = 50/57 (87%) Strand = Plus / Plus Query: 1425 aatggttccaatgcttctaccggatggccgtcttgtatatgttgtacaacagcctgg 1481 |||||||||||||||||| ||||||||||| ||| |||||| | ||||||||||| Sbjct: 107 aatggttccaatgcttcttccggatggccgagttggctatgttctgcaacagcctgg 163
>gb|AY205594.1| Pavo cristatus Sox8 (sox8) mRNA, partial cds Length = 734 Score = 56.0 bits (28), Expect = 5e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 1576 ggcggcagcggtggcggtggaggcagtggtgg 1607 ||||||||| |||||||||||||||||||||| Sbjct: 359 ggcggcagctgtggcggtggaggcagtggtgg 328
>gb|AY205593.1| Anas platyrhynchos Sox8 (sox8) mRNA, partial cds Length = 734 Score = 56.0 bits (28), Expect = 5e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 1576 ggcggcagcggtggcggtggaggcagtggtgg 1607 ||||||||| |||||||||||||||||||||| Sbjct: 359 ggcggcagctgtggcggtggaggcagtggtgg 328
>ref|NM_204731.1| Gallus gallus SRY (sex determining region Y)-box 8 (SOX8), mRNA gb|AF228664.1|AF228664 Gallus gallus SOX8 transcription factor (SOX8) mRNA, complete cds Length = 1650 Score = 56.0 bits (28), Expect = 5e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 1576 ggcggcagcggtggcggtggaggcagtggtgg 1607 ||||||||| |||||||||||||||||||||| Sbjct: 1194 ggcggcagctgtggcggtggaggcagtggtgg 1163
>gb|AY112159.1| Zea mays CL12347_2 mRNA sequence Length = 670 Score = 56.0 bits (28), Expect = 5e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 1396 tatgctcccggtgctcctccaggtgcagcaatggttccaatgcttctaccggatggccgt 1455 |||||||| |||||| |||||||| || ||||| | |||||| | ||||| || |||||| Sbjct: 491 tatgctccaggtgcttctccaggttcaacaatgatcccaatggtcctaccagacggccgt 432 Query: 1456 cttgtata 1463 |||||||| Sbjct: 431 cttgtata 424
>gb|AY112121.1| Zea mays CL12347_1 mRNA sequence Length = 677 Score = 56.0 bits (28), Expect = 5e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 1396 tatgctcccggtgctcctccaggtgcagcaatggttccaatgcttctaccggatggccgt 1455 |||||||| ||||||||||| || || ||||| | |||||| | ||||| ||||||||| Sbjct: 533 tatgctccaggtgctcctcccggctcaacaatgatcccaatggtcctaccagatggccgt 474 Query: 1456 cttgtata 1463 |||||||| Sbjct: 473 cttgtata 466
>emb|CT829346.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI013I18, full insert sequence Length = 680 Score = 52.0 bits (26), Expect = 0.008 Identities = 32/34 (94%) Strand = Plus / Plus Query: 110 agttgccttggaactttgagctcttcgagatgcc 143 |||||||||||||||||||||| ||| ||||||| Sbjct: 398 agttgccttggaactttgagcttttcaagatgcc 431
>ref|XM_001178980.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC583244 (LOC583244), mRNA Length = 3089 Score = 50.1 bits (25), Expect = 0.032 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1575 tggcggcagcggtggcggtggaggcagtggtgg 1607 ||||||| |||| |||||||||||||||||||| Sbjct: 672 tggcggccgcggcggcggtggaggcagtggtgg 704
>ref|XM_783164.2| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC583244 (LOC583244), mRNA Length = 3089 Score = 50.1 bits (25), Expect = 0.032 Identities = 31/33 (93%) Strand = Plus / Plus Query: 1575 tggcggcagcggtggcggtggaggcagtggtgg 1607 ||||||| |||| |||||||||||||||||||| Sbjct: 672 tggcggccgcggcggcggtggaggcagtggtgg 704
>ref|XM_396843.3| PREDICTED: Apis mellifera similar to CG32542-PA (LOC413399), mRNA Length = 5463 Score = 50.1 bits (25), Expect = 0.032 Identities = 28/29 (96%) Strand = Plus / Plus Query: 1576 ggcggcagcggtggcggtggaggcagtgg 1604 |||||| |||||||||||||||||||||| Sbjct: 100 ggcggcggcggtggcggtggaggcagtgg 128
>dbj|AK227578.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-18-C02 Length = 2065 Score = 50.1 bits (25), Expect = 0.032 Identities = 49/57 (85%) Strand = Plus / Plus Query: 1425 aatggttccaatgcttctaccggatggccgtcttgtatatgttgtacaacagcctgg 1481 |||||||||||||||||| || |||||||| ||| |||||| | ||||||||||| Sbjct: 1630 aatggttccaatgcttcttcccgatggccgagttggctatgttctgcaacagcctgg 1686
>ref|XM_001084972.1| PREDICTED: Macaca mulatta kinesin family member 3C, transcript variant 4 (KIF3C), mRNA Length = 5386 Score = 50.1 bits (25), Expect = 0.032 Identities = 28/29 (96%) Strand = Plus / Plus Query: 1579 ggcagcggtggcggtggaggcagtggtgg 1607 ||||| ||||||||||||||||||||||| Sbjct: 1428 ggcagtggtggcggtggaggcagtggtgg 1456
>ref|NM_116309.2| Arabidopsis thaliana RNA binding / nucleic acid binding (AT4G00830) mRNA, complete cds Length = 2267 Score = 50.1 bits (25), Expect = 0.032 Identities = 49/57 (85%) Strand = Plus / Plus Query: 1425 aatggttccaatgcttctaccggatggccgtcttgtatatgttgtacaacagcctgg 1481 |||||||||||||||||| || |||||||| ||| |||||| | ||||||||||| Sbjct: 1442 aatggttccaatgcttcttcccgatggccgagttggctatgttctgcaacagcctgg 1498
>ref|NM_001036489.1| Arabidopsis thaliana RNA binding / nucleic acid binding (AT4G00830) mRNA, complete cds Length = 2455 Score = 50.1 bits (25), Expect = 0.032 Identities = 49/57 (85%) Strand = Plus / Plus Query: 1425 aatggttccaatgcttctaccggatggccgtcttgtatatgttgtacaacagcctgg 1481 |||||||||||||||||| || |||||||| ||| |||||| | ||||||||||| Sbjct: 1630 aatggttccaatgcttcttcccgatggccgagttggctatgttctgcaacagcctgg 1686
>gb|AY113171.1| Arabidopsis thaliana AT4g00830/A_TM018A10_14 mRNA, complete cds Length = 1488 Score = 50.1 bits (25), Expect = 0.032 Identities = 49/57 (85%) Strand = Plus / Plus Query: 1425 aatggttccaatgcttctaccggatggccgtcttgtatatgttgtacaacagcctgg 1481 |||||||||||||||||| || |||||||| ||| |||||| | ||||||||||| Sbjct: 1296 aatggttccaatgcttcttcccgatggccgagttggctatgttctgcaacagcctgg 1352
>gb|AF367357.1| Arabidopsis thaliana AT4g00830/A_TM018A10_14 mRNA, complete cds Length = 1838 Score = 50.1 bits (25), Expect = 0.032 Identities = 49/57 (85%) Strand = Plus / Plus Query: 1425 aatggttccaatgcttctaccggatggccgtcttgtatatgttgtacaacagcctgg 1481 |||||||||||||||||| || |||||||| ||| |||||| | ||||||||||| Sbjct: 1441 aatggttccaatgcttcttcccgatggccgagttggctatgttctgcaacagcctgg 1497
>dbj|AP007297.1| Lotus japonicus genomic DNA, clone:LjT02G13, TM0489a, complete sequence Length = 72531 Score = 50.1 bits (25), Expect = 0.032 Identities = 31/33 (93%) Strand = Plus / Minus Query: 1575 tggcggcagcggtggcggtggaggcagtggtgg 1607 |||||||||||||||||||| ||| |||||||| Sbjct: 6646 tggcggcagcggtggcggtgaaggtagtggtgg 6614
>emb|AL691481.15| Mouse DNA sequence from clone RP23-173C3 on chromosome 4 Contains a non-neuron enolase 1 alpha (Eno1) pseudogene, a mitochondrial H+ transporting ATP synthase F0 complex subunit d (Atp5h) pseudogene and a CpG island, complete sequence Length = 230127 Score = 50.1 bits (25), Expect = 0.032 Identities = 25/25 (100%) Strand = Plus / Minus Query: 4 cctgctcttcttcctcctcctcctc 28 ||||||||||||||||||||||||| Sbjct: 216692 cctgctcttcttcctcctcctcctc 216668
>emb|CR860317.1| Pongo pygmaeus mRNA; cDNA DKFZp459A044 (from clone DKFZp459A044) Length = 4905 Score = 50.1 bits (25), Expect = 0.032 Identities = 28/29 (96%) Strand = Plus / Plus Query: 1579 ggcagcggtggcggtggaggcagtggtgg 1607 ||||| ||||||||||||||||||||||| Sbjct: 944 ggcagtggtggcggtggaggcagtggtgg 972
>emb|BX827625.1|CNS0A4H2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS87ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 654 Score = 50.1 bits (25), Expect = 0.032 Identities = 49/57 (85%) Strand = Plus / Plus Query: 1425 aatggttccaatgcttctaccggatggccgtcttgtatatgttgtacaacagcctgg 1481 |||||||||||||||||| || |||||||| ||| |||||| | ||||||||||| Sbjct: 194 aatggttccaatgcttcttcccgatggccgagttggctatgttctgcaacagcctgg 250
>ref|XM_001067133.1| PREDICTED: Rattus norvegicus hypothetical protein LOC688487 (LOC688487), mRNA Length = 753 Score = 48.1 bits (24), Expect = 0.13 Identities = 27/28 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctcta 30 |||| ||||||||||||||||||||||| Sbjct: 341 ccctcctcttcttcctcctcctcctcta 314
>ref|XM_868620.1| PREDICTED: Bos taurus hypothetical protein LOC616570 (LOC616570), mRNA Length = 969 Score = 48.1 bits (24), Expect = 0.13 Identities = 24/24 (100%) Strand = Plus / Minus Query: 5 ctgctcttcttcctcctcctcctc 28 |||||||||||||||||||||||| Sbjct: 426 ctgctcttcttcctcctcctcctc 403
>gb|BT013793.1| Lycopersicon esculentum clone 132713F, mRNA sequence Length = 1837 Score = 48.1 bits (24), Expect = 0.13 Identities = 36/40 (90%) Strand = Plus / Plus Query: 449 agcatgctgaacttcttgctcttcctcctcatggatctga 488 |||||||||||||||| ||||| ||||| ||||| ||||| Sbjct: 421 agcatgctgaacttctagctctccctccacatgggtctga 460
>gb|AC114919.5| Mus musculus BAC clone RP23-102A8 from 18, complete sequence Length = 185198 Score = 48.1 bits (24), Expect = 0.13 Identities = 24/24 (100%) Strand = Plus / Plus Query: 5 ctgctcttcttcctcctcctcctc 28 |||||||||||||||||||||||| Sbjct: 39702 ctgctcttcttcctcctcctcctc 39725
>gb|AC117600.9| Mus musculus chromosome 1, clone RP23-449C20, complete sequence Length = 195848 Score = 48.1 bits (24), Expect = 0.13 Identities = 24/24 (100%) Strand = Plus / Minus Query: 6 tgctcttcttcctcctcctcctct 29 |||||||||||||||||||||||| Sbjct: 142337 tgctcttcttcctcctcctcctct 142314 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 142317 ctcttcttcctcctcctcctc 142297
>emb|AL162425.15| Human DNA sequence from clone RP11-523L1 on chromosome 9 Contains the TNC gene for tenascin C (hexabrachion) (TN, HXB) and a novel gene, complete sequence Length = 177728 Score = 48.1 bits (24), Expect = 0.13 Identities = 24/24 (100%) Strand = Plus / Minus Query: 4 cctgctcttcttcctcctcctcct 27 |||||||||||||||||||||||| Sbjct: 109739 cctgctcttcttcctcctcctcct 109716
>gb|DQ022213.1| Danio rerio PD2-like protein mRNA, complete cds Length = 1629 Score = 48.1 bits (24), Expect = 0.13 Identities = 27/28 (96%) Strand = Plus / Minus Query: 2 gccctgctcttcttcctcctcctcctct 29 ||||| |||||||||||||||||||||| Sbjct: 1539 gccctcctcttcttcctcctcctcctct 1512
>gb|AY206872.1| Bonasa bonasia sox8 mRNA, partial cds Length = 731 Score = 48.1 bits (24), Expect = 0.13 Identities = 30/32 (93%) Strand = Plus / Minus Query: 1576 ggcggcagcggtggcggtggaggcagtggtgg 1607 ||||||||| |||||||||||||| ||||||| Sbjct: 359 ggcggcagctgtggcggtggaggcggtggtgg 328
>gb|AY205595.1| Alectoris chukar Sox8 mRNA, partial cds Length = 733 Score = 48.1 bits (24), Expect = 0.13 Identities = 30/32 (93%) Strand = Plus / Minus Query: 1576 ggcggcagcggtggcggtggaggcagtggtgg 1607 ||||||||| |||||||||||||| ||||||| Sbjct: 359 ggcggcagctgtggcggtggaggcggtggtgg 328
>emb|AL606744.30| Mouse DNA sequence from clone RP23-267O21 on chromosome 3, complete sequence Length = 185867 Score = 48.1 bits (24), Expect = 0.13 Identities = 24/24 (100%) Strand = Plus / Minus Query: 5 ctgctcttcttcctcctcctcctc 28 |||||||||||||||||||||||| Sbjct: 132072 ctgctcttcttcctcctcctcctc 132049
>gb|AC109143.19| Mus musculus chromosome 1, clone RP23-105D15, complete sequence Length = 211924 Score = 48.1 bits (24), Expect = 0.13 Identities = 24/24 (100%) Strand = Plus / Plus Query: 6 tgctcttcttcctcctcctcctct 29 |||||||||||||||||||||||| Sbjct: 208858 tgctcttcttcctcctcctcctct 208881 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 208878 ctcttcttcctcctcctcctc 208898
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 48.1 bits (24), Expect = 0.13 Identities = 24/24 (100%) Strand = Plus / Plus Query: 2 gccctgctcttcttcctcctcctc 25 |||||||||||||||||||||||| Sbjct: 1787 gccctgctcttcttcctcctcctc 1810 Score = 48.1 bits (24), Expect = 0.13 Identities = 24/24 (100%) Strand = Plus / Minus Query: 2 gccctgctcttcttcctcctcctc 25 |||||||||||||||||||||||| Sbjct: 56410 gccctgctcttcttcctcctcctc 56387
>gb|AC122382.4| Mus musculus BAC clone RP23-479D11 from 13, complete sequence Length = 190429 Score = 48.1 bits (24), Expect = 0.13 Identities = 24/24 (100%) Strand = Plus / Plus Query: 5 ctgctcttcttcctcctcctcctc 28 |||||||||||||||||||||||| Sbjct: 20200 ctgctcttcttcctcctcctcctc 20223
>emb|AJ245427.1|BLA245427 Branchiostoma lanceolatum mRNA for intermediate filament protein X1 (gene x1) Length = 1605 Score = 48.1 bits (24), Expect = 0.13 Identities = 30/32 (93%) Strand = Plus / Plus Query: 1576 ggcggcagcggtggcggtggaggcagtggtgg 1607 |||||| ||||||||||||||||| ||||||| Sbjct: 1212 ggcggcggcggtggcggtggaggcggtggtgg 1243
>ref|XM_425518.2| PREDICTED: Gallus gallus similar to atrophin-1 (LOC427946), mRNA Length = 4482 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctc 25 ||||||||||||||||||||||| Sbjct: 871 ccctgctcttcttcctcctcctc 893
>ref|XM_001149303.1| PREDICTED: Pan troglodytes kinesin family member 3C, transcript variant 4 (KIF3C), mRNA Length = 5385 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 1434 ggtggcggtggaggcagtggtgg 1456
>ref|XM_001149168.1| PREDICTED: Pan troglodytes kinesin family member 3C, transcript variant 2 (KIF3C), mRNA Length = 5361 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 1404 ggtggcggtggaggcagtggtgg 1426
>ref|XM_001149366.1| PREDICTED: Pan troglodytes kinesin family member 3C, transcript variant 5 (KIF3C), mRNA Length = 5391 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 1434 ggtggcggtggaggcagtggtgg 1456
>ref|XM_001149230.1| PREDICTED: Pan troglodytes kinesin family member 3C, transcript variant 3 (KIF3C), mRNA Length = 5348 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 1434 ggtggcggtggaggcagtggtgg 1456
>ref|XM_001169858.1| PREDICTED: Pan troglodytes cell division cycle associated 8, transcript variant 1 (CDCA8), mRNA Length = 2340 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 2 gccctgctcttcttcctcctcctcctc 28 ||||| ||||||||||||||||||||| Sbjct: 1581 gccctcctcttcttcctcctcctcctc 1607
>ref|XM_001169882.1| PREDICTED: Pan troglodytes cell division cycle associated 8, transcript variant 2 (CDCA8), mRNA Length = 2427 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 2 gccctgctcttcttcctcctcctcctc 28 ||||| ||||||||||||||||||||| Sbjct: 1668 gccctcctcttcttcctcctcctcctc 1694
>ref|XM_513327.2| PREDICTED: Pan troglodytes cell division cycle associated 8, transcript variant 3 (CDCA8), mRNA Length = 2330 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 2 gccctgctcttcttcctcctcctcctc 28 ||||| ||||||||||||||||||||| Sbjct: 1571 gccctcctcttcttcctcctcctcctc 1597
>ref|XM_001056908.1| PREDICTED: Rattus norvegicus similar to cofactor required for Sp1 transcriptional activation, subunit 2, 150kDa (predicted) (RGD1560170_predicted), mRNA Length = 7018 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1579 ggcagcggtggcggtggaggcag 1601 ||||||||||||||||||||||| Sbjct: 333 ggcagcggtggcggtggaggcag 355
>ref|XM_228713.4| PREDICTED: Rattus norvegicus similar to cofactor required for Sp1 transcriptional activation, subunit 2, 150kDa (predicted) (RGD1560170_predicted), mRNA Length = 7018 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1579 ggcagcggtggcggtggaggcag 1601 ||||||||||||||||||||||| Sbjct: 333 ggcagcggtggcggtggaggcag 355
>ref|XM_001072254.1| PREDICTED: Rattus norvegicus podocalyxin-like 2 (predicted) (Podxl2_predicted), mRNA Length = 2001 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctct 29 ||||||||||||||||||||||| Sbjct: 541 gctcttcttcctcctcctcctct 519
>ref|XM_216209.4| PREDICTED: Rattus norvegicus podocalyxin-like 2 (predicted) (Podxl2_predicted), mRNA Length = 2022 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctct 29 ||||||||||||||||||||||| Sbjct: 562 gctcttcttcctcctcctcctct 540
>ref|XM_001073700.1| PREDICTED: Rattus norvegicus hypothetical protein LOC686351 (LOC686351), mRNA Length = 708 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 296 ccctcctcttcttcctcctcctcctct 270
>ref|XM_001081194.1| PREDICTED: Rattus norvegicus centromere autoantigen B (predicted) (Cenpb_predicted), mRNA Length = 2927 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 1339 ccctcctcttcttcctcctcctcctct 1313 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1316 ctcttcttcctcctcctcctct 1295
>ref|XM_342521.3| PREDICTED: Rattus norvegicus centromere autoantigen B (predicted) (Cenpb_predicted), mRNA Length = 2905 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 1317 ccctcctcttcttcctcctcctcctct 1291 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1294 ctcttcttcctcctcctcctct 1273
>ref|XR_012314.1| PREDICTED: Macaca mulatta similar to WD repeat domain 52 (LOC710894), mRNA Length = 5230 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctct 29 ||||||||||||||||||||||| Sbjct: 1669 gctcttcttcctcctcctcctct 1647
>emb|CR382299.29| Zebrafish DNA sequence from clone DKEY-9I13 in linkage group 2, complete sequence Length = 129662 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 2 gccctgctcttcttcctcctcctcctc 28 ||||| ||||||||||||||||||||| Sbjct: 8063 gccctcctcttcttcctcctcctcctc 8037
>ref|XR_001626.1| PREDICTED: Mus musculus similar to CG12750-PA (LOC545432), misc RNA Length = 3310 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctcta 30 ||||||||||||||||||||||| Sbjct: 1539 ctcttcttcctcctcctcctcta 1517
>gb|DQ483949.1| Gymnogyps californianus contig 115G genomic sequence Length = 666 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 6 tgctcttcttcctcctcctcctc 28 ||||||||||||||||||||||| Sbjct: 561 tgctcttcttcctcctcctcctc 539
>gb|AC158553.13| Mus musculus chromosome 8, clone RP23-349E13, complete sequence Length = 213309 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 140111 cccttctcttcttcctcctcctcctct 140137
>gb|AC167972.3| Mus musculus BAC clone RP24-73H24 from chromosome 13, complete sequence Length = 224330 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 55750 ccctcctcttcttcctcctcctcctct 55724
>gb|AC168314.2| Mus musculus BAC clone RP24-229J18 from chromosome 8, complete sequence Length = 191850 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 66212 ccctcctcttcttcctcctcctcctct 66238
>gb|AC122528.3| Mus musculus BAC clone RP24-506F15 from chromosome 9, complete sequence Length = 142071 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1482 ggcacagcaacattttgcttccc 1504 ||||||||||||||||||||||| Sbjct: 108677 ggcacagcaacattttgcttccc 108699
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 7 gctcttcttcctcctcctcctct 29 ||||||||||||||||||||||| Sbjct: 2055433 gctcttcttcctcctcctcctct 2055455 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 2055452 ctcttcttcctcctcctcctct 2055473 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 2055470 ctcttcttcctcctcctcctct 2055491
>ref|NM_002254.5| Homo sapiens kinesin family member 3C (KIF3C), mRNA Length = 5401 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 1434 ggtggcggtggaggcagtggtgg 1456
>gb|AC145760.3| Microcebus murinus clone CH257-514K9, complete sequence Length = 271789 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctcta 30 ||||||||||||||||||||||| Sbjct: 104496 ctcttcttcctcctcctcctcta 104474
>gb|AC131081.7| Mus musculus chromosome 10, clone RP23-438J1, complete sequence Length = 214060 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 116232 ccctcctcttcttcctcctcctcctct 116206 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 81139 ctcttcttcctcctcctcctct 81118
>gb|AC129567.8| Mus musculus chromosome 8, clone RP23-50L10, complete sequence Length = 228046 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 2 gccctgctcttcttcctcctcctcctc 28 ||||| ||||||||||||||||||||| Sbjct: 171634 gcccttctcttcttcctcctcctcctc 171660
>gb|AC121537.9| Mus musculus chromosome 8, clone RP24-394O10, complete sequence Length = 218348 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 119652 ccctcctcttcttcctcctcctcctct 119626
>gb|AC138108.3| Mus musculus BAC clone RP24-497M9 from chromosome 10, complete sequence Length = 135541 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 3492 ccctcctcttcttcctcctcctcctct 3518 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 38585 ctcttcttcctcctcctcctct 38606
>gb|AC139245.4| Mus musculus BAC clone RP23-309N16 from chromosome 8, complete sequence Length = 202789 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 168976 cccttctcttcttcctcctcctcctct 168950
>gb|AC122913.4| Mus musculus BAC clone RP23-25J21 from 3, complete sequence Length = 205216 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||||||| |||||||||||||||||| Sbjct: 138126 ccctgctcctcttcctcctcctcctct 138152
>gb|AC124194.3| Mus musculus BAC clone RP23-277L21 from 2, complete sequence Length = 181676 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 4 cctgctcttcttcctcctcctcc 26 ||||||||||||||||||||||| Sbjct: 44302 cctgctcttcttcctcctcctcc 44324
>ref|XM_546993.2| PREDICTED: Canis familiaris similar to zinc finger protein 316 (LOC489875), mRNA Length = 3015 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctcta 30 ||||||||||||||||||||||| Sbjct: 147 ctcttcttcctcctcctcctcta 125
>gb|BC016254.1| Mus musculus RIKEN cDNA 2010004A03 gene, mRNA (cDNA clone MGC:28891 IMAGE:4912097), complete cds Length = 1726 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 262 cccttctcttcttcctcctcctcctct 288
>gb|AC092857.17| Rattus norvegicus clone rp32-362k5, complete sequence Length = 143406 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctcta 30 ||||||||||||||||||||||| Sbjct: 31628 ctcttcttcctcctcctcctcta 31650 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 31578 ctcttcttcctcctcctcctct 31599
>gb|AC154683.2| Mus musculus BAC clone RP23-142O4 from chromosome 14, complete sequence Length = 219067 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 48591 ccctcctcttcttcctcctcctcctct 48565
>gb|AC141480.4| Mus musculus BAC clone RP23-210I6 from chromosome 3, complete sequence Length = 209458 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 128838 ccctcctcttcttcctcctcctcctct 128864
>gb|AC164548.3| Mus musculus BAC clone RP24-243A3 from chromosome 9, complete sequence Length = 165415 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1482 ggcacagcaacattttgcttccc 1504 ||||||||||||||||||||||| Sbjct: 23286 ggcacagcaacattttgcttccc 23308
>gb|AC157373.3| Medicago truncatula chromosome 7 BAC clone mth2-108g9, complete sequence Length = 95326 Score = 46.1 bits (23), Expect = 0.51 Identities = 50/59 (84%) Strand = Plus / Plus Query: 1012 gtatatgtcaaaaacctgcccaagaatgttactcaagggcagctgaaaaagctgtttga 1070 |||||||| || ||||| ||||||||||| ||| ||| |||| |||| ||||| ||||| Sbjct: 28722 gtatatgtgaagaaccttcccaagaatgtgactaaagagcagttgaagaagctttttga 28780
>gb|AC154413.3| Mus musculus BAC clone RP24-230J5 from chromosome 13, complete sequence Length = 174730 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 28195 ccctcctcttcttcctcctcctcctct 28221
>dbj|AK163145.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:A730035K02 product:unclassifiable, full insert sequence Length = 2337 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 1282 ccctcctcttcttcctcctcctcctct 1308
>gb|AC093267.2| Homo sapiens chromosome 5 clone RP11-280F11, complete sequence Length = 170999 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctcta 30 ||||||||||||||||||||||| Sbjct: 115399 ctcttcttcctcctcctcctcta 115377
>ref|NM_029646.1| Mus musculus RIKEN cDNA 2010004A03 gene (2010004A03Rik), mRNA dbj|AK008082.1| Mus musculus adult male small intestine cDNA, RIKEN full-length enriched library, clone:2010004A03 product:hypothetical protein, full insert sequence Length = 1796 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 231 cccttctcttcttcctcctcctcctct 257
>gb|AC104658.6| Homo sapiens BAC clone RP11-593M6 from 4, complete sequence Length = 140028 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 6 tgctcttcttcctcctcctcctc 28 ||||||||||||||||||||||| Sbjct: 5036 tgctcttcttcctcctcctcctc 5014
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 7 gctcttcttcctcctcctcctct 29 ||||||||||||||||||||||| Sbjct: 1873032 gctcttcttcctcctcctcctct 1873054 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 2744263 ctcttcttcctcctcctcctct 2744284 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctc 28 |||||||||||||| ||||||||||| Sbjct: 26252512 ccctgctcttcttcttcctcctcctc 26252487 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 35576042 ctcttcttcctcctcctcctct 35576021 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 4650904 tcttcttcctcctcctcctct 4650924 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 18928372 ctcttcttcctcctcctcctc 18928352 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 21496509 tcttcttcctcctcctcctct 21496529 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 26252503 tcttcttcctcctcctcctct 26252483
>gb|AC068303.10| Homo sapiens 3 BAC RP11-324H4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172695 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctc 25 ||||||||||||||||||||||| Sbjct: 13007 ccctgctcttcttcctcctcctc 13029
>emb|BX571741.1|HSM806626 Homo sapiens mRNA; cDNA DKFZp686G1646 (from clone DKFZp686G1646) Length = 5402 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 1398 ggtggcggtggaggcagtggtgg 1420
>gb|AC155724.8| Mus musculus 6 BAC RP24-132K20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 196715 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 100260 cccttctcttcttcctcctcctcctct 100286
>emb|AJ002223.1|HSJ002223 Homo sapiens kinesin-like protein 3C (Kif3C), exon 1 Length = 1825 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 1056 ggtggcggtggaggcagtggtgg 1078
>emb|AL646042.14| Mouse DNA sequence from clone RP23-70A15 on chromosome 11 Contains the 5' end of the Ulk2 gene for Unc-51 like kinase 2 (C. elegans), two novel genes (A530017D24Rik, D630015H07), the Akap10 gene for A kinase (PRKA) anchor protein 10, the 5' end of the gene for a novel protein similar to human sperm antigen HCMOGT-1 (B230396K10Rik) and three CpG islands, complete sequence Length = 159693 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 8656 ccctcctcttcttcctcctcctcctct 8630
>gb|BC092406.1| Homo sapiens kinesin family member 3C, mRNA (cDNA clone MGC:102751 IMAGE:6504352), complete cds Length = 4128 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 1359 ggtggcggtggaggcagtggtgg 1381
>gb|AC013449.8| Homo sapiens BAC clone RP11-558C24 from 2, complete sequence Length = 120997 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 51687 ggtggcggtggaggcagtggtgg 51665
>gb|AC108463.3| Homo sapiens BAC clone RP11-181E10 from 2, complete sequence Length = 63525 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctct 29 ||||||||||||||||||||||| Sbjct: 37027 gctcttcttcctcctcctcctct 37005
>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0081C13 Length = 144624 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 7 gctcttcttcctcctcctcctct 29 ||||||||||||||||||||||| Sbjct: 12593 gctcttcttcctcctcctcctct 12615
>dbj|AP004799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0585B01 Length = 133231 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 7 gctcttcttcctcctcctcctct 29 ||||||||||||||||||||||| Sbjct: 109676 gctcttcttcctcctcctcctct 109698
>ref|XM_569854.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNC07030) partial mRNA Length = 4859 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctct 29 ||||||||||||||||||||||| Sbjct: 2724 gctcttcttcctcctcctcctct 2702 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 2687 ctcttcttcctcctcctcctct 2666 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 2705 ctcttcttcctcctcctcctct 2684
>emb|BX296527.6| Zebrafish DNA sequence from clone DKEYP-32C3 in linkage group 2, complete sequence Length = 185706 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 2 gccctgctcttcttcctcctcctcctc 28 ||||| ||||||||||||||||||||| Sbjct: 82030 gccctcctcttcttcctcctcctcctc 82056
>emb|AL772256.15| Mouse DNA sequence from clone RP23-141N19 on chromosome 2, complete sequence Length = 191321 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctcta 30 ||||||||||||||||||||||| Sbjct: 135609 ctcttcttcctcctcctcctcta 135587 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 123989 ctcttcttcctcctcctcctct 123968 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 129799 ctcttcttcctcctcctcctct 129778 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 141419 ctcttcttcctcctcctcctct 141398 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 147229 ctcttcttcctcctcctcctct 147208 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 153039 ctcttcttcctcctcctcctct 153018 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 158849 ctcttcttcctcctcctcctct 158828
>gb|BC042486.1| Homo sapiens kinesin family member 3C, mRNA (cDNA clone MGC:9147 IMAGE:3866587), complete cds Length = 4150 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 1360 ggtggcggtggaggcagtggtgg 1382
>emb|AL935071.4|CNS08CCN Oryza sativa chromosome 12, . BAC OSJNBb0016C24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 87778 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1782 catgcaactatgccacatcatca 1804 ||||||||||||||||||||||| Sbjct: 9063 catgcaactatgccacatcatca 9041
>emb|AL713910.2|CNS07YQB Oryza sativa chromosome 12, . BAC OSJNBa0042B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145118 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1782 catgcaactatgccacatcatca 1804 ||||||||||||||||||||||| Sbjct: 79358 catgcaactatgccacatcatca 79336
>emb|AL929153.11| Mouse DNA sequence from clone RP23-55C8 on chromosome 2, complete sequence Length = 116887 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 4 cctgctcttcttcctcctcctcc 26 ||||||||||||||||||||||| Sbjct: 19551 cctgctcttcttcctcctcctcc 19529
>gb|AC144798.4| Mus musculus BAC clone RP24-364A24 from 14, complete sequence Length = 159766 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 110962 ccctcctcttcttcctcctcctcctct 110936
>dbj|AP005136.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-715F3, complete sequence Length = 174547 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctcta 30 ||||||||||||||||||||||| Sbjct: 54364 ctcttcttcctcctcctcctcta 54342
>emb|BX927101.19| Zebrafish DNA sequence from clone CH211-120F16 in linkage group 2, complete sequence Length = 162145 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Minus Query: 2 gccctgctcttcttcctcctcctcctc 28 ||||| ||||||||||||||||||||| Sbjct: 11423 gccctcctcttcttcctcctcctcctc 11397
>gb|AF035621.1|AF035621 Homo sapiens kinesin-related protein (KIF3C) mRNA, complete cds Length = 4913 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 970 ggtggcggtggaggcagtggtgg 992
>gb|AC132945.3| Mus musculus BAC clone RP24-321A15 from 8, complete sequence Length = 230047 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 225585 cccttctcttcttcctcctcctcctct 225611
>gb|AC141871.2| Mus musculus BAC clone RP24-394A13 from 8, complete sequence Length = 164114 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 125661 ccctcctcttcttcctcctcctcctct 125687
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 1782 catgcaactatgccacatcatca 1804 ||||||||||||||||||||||| Sbjct: 61416 catgcaactatgccacatcatca 61394
>gb|AF018164.1|AF018164 Homo sapiens kinesin-like protein 3C (KIF3C) mRNA, complete cds Length = 3732 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 1585 ggtggcggtggaggcagtggtgg 1607 ||||||||||||||||||||||| Sbjct: 968 ggtggcggtggaggcagtggtgg 990
>emb|AL772137.8| Mouse DNA sequence from clone RP23-229A22 on chromosome 4, complete sequence Length = 165975 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 148078 ccctcctcttcttcctcctcctcctct 148104
>emb|AL831723.8| Mouse DNA sequence from clone RP23-100C7 on chromosome 4, complete sequence Length = 171424 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctcta 30 ||||||||||||||||||||||| Sbjct: 137269 ctcttcttcctcctcctcctcta 137247 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 137218 ctcttcttcctcctcctcctct 137197 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 35434 tcttcttcctcctcctcctct 35414 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 137200 ctcttcttcctcctcctcctc 137180 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 137332 ctcttcttcctcctcctcctc 137312
>emb|AL671335.12| Mouse DNA sequence from clone RP23-130J1 on chromosome X, complete sequence Length = 175336 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 9 tcttcttcctcctcctcctctag 31 ||||||||||||||||||||||| Sbjct: 40356 tcttcttcctcctcctcctctag 40378
>emb|AL672019.7| Mouse DNA sequence from clone RP23-33P21 on chromosome X, complete sequence Length = 192874 Score = 46.1 bits (23), Expect = 0.51 Identities = 23/23 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctcta 30 ||||||||||||||||||||||| Sbjct: 116628 ctcttcttcctcctcctcctcta 116650
>emb|AL691472.6| Mouse DNA sequence from clone RP23-217C12 on chromosome 2, complete sequence Length = 212364 Score = 46.1 bits (23), Expect = 0.51 Identities = 26/27 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctct 29 |||| |||||||||||||||||||||| Sbjct: 40653 ccctcctcttcttcctcctcctcctct 40679
>gb|BC127728.1| Homo sapiens cysteine-rich hydrophobic domain 1, mRNA (cDNA clone MGC:157831 IMAGE:40127525), complete cds Length = 799 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 228 ctcttcttcctcctcctcctct 207
>gb|BC127727.1| Homo sapiens cDNA clone MGC:157830 IMAGE:40127524, complete cds Length = 739 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 228 ctcttcttcctcctcctcctct 207
>ref|XM_001232934.1| PREDICTED: Gallus gallus splicing factor 3a, subunit 3, 60kDa (SF3A3), mRNA Length = 1744 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 5 ctgctcttcttcctcctcctcc 26 |||||||||||||||||||||| Sbjct: 1113 ctgctcttcttcctcctcctcc 1092
>ref|XM_418546.2| PREDICTED: Gallus gallus similar to PAXIP1 protein (LOC420441), mRNA Length = 3780 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1119 ctcttcttcctcctcctcctct 1098
>ref|XM_841151.1| Trypanosoma brucei TREU927 hypothetical protein, conserved (Tb927_7.6210) mRNA, complete cds Length = 786 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1577 gcggcagcggtggcggtggagg 1598 |||||||||||||||||||||| Sbjct: 509 gcggcagcggtggcggtggagg 530
>ref|XR_026185.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC586079 (LOC586079), mRNA Length = 1668 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 4 cctgctcttcttcctcctcctcctct 29 |||||||||| ||||||||||||||| Sbjct: 1459 cctgctcttcctcctcctcctcctct 1434
>ref|XM_001188354.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC591134 (LOC591134), mRNA Length = 5129 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctc 28 |||| ||||||||||||||||||||| Sbjct: 250 ccctcctcttcttcctcctcctcctc 225
>ref|XM_001191890.1| PREDICTED: Strongylocentrotus purpuratus similar to Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) (LOC580362), partial mRNA Length = 1621 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 4 cctgctcttcttcctcctcctcctct 29 |||||||||| ||||||||||||||| Sbjct: 1412 cctgctcttcctcctcctcctcctct 1387
>ref|XR_025844.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC586079 (LOC586079), mRNA Length = 1668 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 4 cctgctcttcttcctcctcctcctct 29 |||||||||| ||||||||||||||| Sbjct: 1459 cctgctcttcctcctcctcctcctct 1434
>ref|XM_795524.2| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC590730 (LOC590730), mRNA Length = 1014 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctcta 30 |||||||||||||||||||||| Sbjct: 410 tcttcttcctcctcctcctcta 389
>ref|XM_790714.2| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC591134 (LOC591134), mRNA Length = 5129 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctc 28 |||| ||||||||||||||||||||| Sbjct: 250 ccctcctcttcttcctcctcctcctc 225
>ref|XM_780425.2| PREDICTED: Strongylocentrotus purpuratus similar to Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae) (LOC580362), partial mRNA Length = 1621 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 4 cctgctcttcttcctcctcctcctct 29 |||||||||| ||||||||||||||| Sbjct: 1412 cctgctcttcctcctcctcctcctct 1387
>dbj|AK239127.1| Sus scrofa mRNA, clone:THY010065E03, expressed in thymus Length = 1937 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1771 ctcttcttcctcctcctcctct 1750
>dbj|AK234726.1| Sus scrofa mRNA, clone:OVRM10011C12, expressed in ovary Length = 2307 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 2141 ctcttcttcctcctcctcctct 2120
>ref|NM_001048087.1| Canis familiaris bromodomain containing 2 (BRD2), mRNA Length = 4715 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 3194 ctcttcttcctcctcctcctct 3173
>ref|NM_001063053.1| Oryza sativa (japonica cultivar-group) Os05g0596000 (Os05g0596000) mRNA, complete cds Length = 2012 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1670 ctcttcttcctcctcctcctct 1691
>ref|NM_001055127.1| Oryza sativa (japonica cultivar-group) Os02g0827300 (Os02g0827300) mRNA, complete cds Length = 2036 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1289 ctcttcttcctcctcctcctct 1268
>ref|NM_001051814.1| Oryza sativa (japonica cultivar-group) Os01g0928800 (Os01g0928800) mRNA, complete cds Length = 2371 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 363 ctcttcttcctcctcctcctct 384
>ref|NM_032408.2| Homo sapiens bromodomain adjacent to zinc finger domain, 1B (BAZ1B), mRNA Length = 6096 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 4149 ctcttcttcctcctcctcctct 4128 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 4166 tcttcttcctcctcctcctct 4146
>ref|NM_001079189.1| Xenopus tropicalis B-cell CLL/lymphoma 11A (bcl11a), mRNA gb|BC123944.1| Xenopus tropicalis B-cell CLL/lymphoma 11A, mRNA (cDNA clone MGC:146233 IMAGE:7688113), complete cds Length = 3112 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1513 ctcttcttcctcctcctcctct 1492
>ref|XR_023905.1| PREDICTED: Pan troglodytes similar to MYST histone acetyltransferase (monocytic leukemia) 4 (LOC450534), mRNA Length = 8574 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 3646 ctcttcttcctcctcctcctct 3625
>ref|XM_001153232.1| PREDICTED: Pan troglodytes short stature homeobox 2, transcript variant 2 (SHOX2), mRNA Length = 3526 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 248 ctcttcttcctcctcctcctct 269
>ref|XM_001157802.1| PREDICTED: Pan troglodytes WD repeat domain 52, transcript variant 1 (WDR52), mRNA Length = 4684 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctc 28 |||||||||||||||||||||| Sbjct: 2674 gctcttcttcctcctcctcctc 2653
>ref|XM_001157853.1| PREDICTED: Pan troglodytes WD repeat domain 52, transcript variant 2 (WDR52), mRNA Length = 4280 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctc 28 |||||||||||||||||||||| Sbjct: 2270 gctcttcttcctcctcctcctc 2249
>ref|NM_001045210.1| Danio rerio similar to DNA-repair protein complementing XP-C cells (Xeroderma pigmentosum group C complementing protein) (p125) (LOC571051), mRNA Length = 3062 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1515 ctcttcttcctcctcctcctct 1494
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 13487848 ctcttcttcctcctcctcctct 13487869 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1652 acaacaacagcagcagtcgca 1672 ||||||||||||||||||||| Sbjct: 18443218 acaacaacagcagcagtcgca 18443198
>gb|AC136174.2| Rattus norvegicus BAC CH230-413G15 () complete sequence Length = 188567 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 66425 ctcttcttcctcctcctcctct 66404 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 111681 ctcttcttcctcctcctcctc 111701
>gb|AC096474.12| Rattus norvegicus Pia BAC CH230-53O4 () complete sequence Length = 242701 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 27765 ctcttcttcctcctcctcctct 27744 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 44220 ctcttcttcctcctcctcctc 44200
>gb|AC118839.5| Rattus norvegicus BAC CH230-232J22 () complete sequence Length = 216952 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 117800 ctcttcttcctcctcctcctct 117779
>gb|AC101221.12| Mus musculus chromosome 13, clone RP23-96E4, complete sequence Length = 258269 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 45706 ctcttcttcctcctcctcctct 45685 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 45724 ctcttcttcctcctcctcctct 45703 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 45795 ctcttcttcctcctcctcctct 45774 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 45813 ctcttcttcctcctcctcctct 45792 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 45632 ctcttcttcctcctcctcctc 45612
>gb|BC113553.1| Homo sapiens WD repeat domain 52, mRNA (cDNA clone MGC:142113 IMAGE:8322605), complete cds Length = 3025 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctc 28 |||||||||||||||||||||| Sbjct: 2238 gctcttcttcctcctcctcctc 2217
>gb|AC188094.1| Pongo pygmaeus abelii chromosome UNK clone CH276-15H12, complete sequence Length = 205234 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 40680 ctcttcttcctcctcctcctct 40701
>gb|AC160104.3| Mus musculus BAC clone RP24-330A11 from chromosome 9, complete sequence Length = 223686 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 168585 ctcttcttcctcctcctcctct 168564
>ref|XM_001079429.1| PREDICTED: Rattus norvegicus hypothetical protein LOC691734 (LOC691734), mRNA Length = 501 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 4 cctgctcttcttcctcctcctc 25 |||||||||||||||||||||| Sbjct: 304 cctgctcttcttcctcctcctc 283
>ref|XM_001069969.1| PREDICTED: Rattus norvegicus hypothetical protein LOC689202 (LOC689202), mRNA Length = 414 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 237 ctcttcttcctcctcctcctct 216 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 255 ctcttcttcctcctcctcctct 234
>gb|AC186355.3| Gallus gallus BAC clone CH261-114D2 from chromosome z, complete sequence Length = 157890 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 18960 ctcttcttcctcctcctcctct 18939
>gb|AC185328.3| Pan troglodytes BAC clone CH251-94O22 from chromosome unknown, complete sequence Length = 186078 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 57048 ctcttcttcctcctcctcctct 57069
>ref|XR_006129.1| PREDICTED: Rattus norvegicus hypothetical protein LOC685198 (LOC685198), mRNA Length = 554 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 374 ctcttcttcctcctcctcctct 353
>ref|XM_001058845.1| PREDICTED: Rattus norvegicus hypothetical protein LOC680783 (LOC680783), mRNA Length = 1332 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 720 ctcttcttcctcctcctcctct 699 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 882 ctcttcttcctcctcctcctct 861
>ref|XM_001057439.1| PREDICTED: Rattus norvegicus hypothetical protein LOC681565 (LOC681565), mRNA Length = 510 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 168 ctcttcttcctcctcctcctct 147
>ref|XR_008994.1| PREDICTED: Rattus norvegicus hypothetical protein LOC686637 (LOC686637), mRNA Length = 306 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 189 ctcttcttcctcctcctcctct 168
>ref|XM_001065305.1| PREDICTED: Rattus norvegicus hypothetical protein LOC685797 (LOC685797), mRNA Length = 507 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 243 ctcttcttcctcctcctcctct 222 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 285 ctcttcttcctcctcctcctct 264
>ref|XM_001078464.1| PREDICTED: Rattus norvegicus hypothetical protein LOC687416 (LOC687416), mRNA Length = 390 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 213 ctcttcttcctcctcctcctct 192 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 231 ctcttcttcctcctcctcctct 210
>ref|XM_001057372.1| PREDICTED: Rattus norvegicus Eph receptor A6 (predicted) (Epha6_predicted), mRNA Length = 4209 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 476 ctcttcttcctcctcctcctct 455
>ref|XM_221595.4| PREDICTED: Rattus norvegicus Eph receptor A6 (predicted) (Epha6_predicted), mRNA Length = 3704 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 476 ctcttcttcctcctcctcctct 455
>ref|XM_001081580.1| PREDICTED: Rattus norvegicus hypothetical protein LOC688234 (LOC688234), mRNA Length = 390 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 204 ctcttcttcctcctcctcctct 183
>ref|XM_001075322.1| PREDICTED: Rattus norvegicus zinc finger protein 692 (predicted) (Zfp692_predicted), mRNA Length = 2439 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 800 ctcttcttcctcctcctcctct 779
>ref|XM_220455.4| PREDICTED: Rattus norvegicus zinc finger protein 692 (predicted) (Zfp692_predicted), mRNA Length = 2439 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 800 ctcttcttcctcctcctcctct 779
>ref|XM_001075237.1| PREDICTED: Rattus norvegicus similar to prolyl-4-hydroxylase-alpha NE2 CG9720-PA (predicted) (RGD1311848_predicted), mRNA Length = 1924 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1570 cgccatggcggcagcggtggcg 1591 |||||||||||||||||||||| Sbjct: 147 cgccatggcggcagcggtggcg 168
>ref|XM_001062509.1| PREDICTED: Rattus norvegicus hypothetical protein LOC682657 (LOC682657), mRNA Length = 1476 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 126 ctcttcttcctcctcctcctct 147
>ref|XM_217285.4| PREDICTED: Rattus norvegicus similar to prolyl-4-hydroxylase-alpha NE2 CG9720-PA (predicted) (RGD1311848_predicted), mRNA Length = 1924 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1570 cgccatggcggcagcggtggcg 1591 |||||||||||||||||||||| Sbjct: 147 cgccatggcggcagcggtggcg 168
>ref|XM_001054777.1| PREDICTED: Rattus norvegicus hypothetical protein LOC679866 (LOC679866), mRNA Length = 798 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 231 ctcttcttcctcctcctcctct 210
>ref|XR_007673.1| PREDICTED: Rattus norvegicus similar to Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific transplantation 84 kDa antigen) (TSTA) (LOC366329), mRNA Length = 2217 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1986 ctcttcttcctcctcctcctct 1965
>ref|XM_001079034.1| PREDICTED: Rattus norvegicus hypothetical protein LOC691615 (LOC691615), mRNA Length = 1035 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 tgctcttcttcctcctcctcct 27 |||||||||||||||||||||| Sbjct: 35 tgctcttcttcctcctcctcct 14
>ref|XM_001073666.1| PREDICTED: Rattus norvegicus hypothetical protein LOC686346 (LOC686346), mRNA Length = 321 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 96 ctcttcttcctcctcctcctct 75
>ref|XM_001076698.1| PREDICTED: Rattus norvegicus hypothetical protein LOC691057 (LOC691057), mRNA Length = 321 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 96 ctcttcttcctcctcctcctct 75
>ref|XM_001070353.1| PREDICTED: Rattus norvegicus hypothetical protein LOC689306 (LOC689306), mRNA Length = 378 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 243 ctcttcttcctcctcctcctct 222 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 330 ctcttcttcctcctcctcctc 310
>ref|XR_005563.1| PREDICTED: Rattus norvegicus hypothetical protein LOC679741 (LOC679741), mRNA Length = 638 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 491 ctcttcttcctcctcctcctct 470
>ref|XM_001074194.1| PREDICTED: Rattus norvegicus similar to zinc finger protein 218 (LOC686456), mRNA Length = 3875 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 95 ctcttcttcctcctcctcctct 74
>ref|XR_008663.1| PREDICTED: Rattus norvegicus hypothetical protein LOC684308 (LOC684308), mRNA Length = 429 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 210 ctcttcttcctcctcctcctct 189
>ref|XM_001058971.1| PREDICTED: Rattus norvegicus hypothetical protein LOC680807 (LOC680807), mRNA Length = 987 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 906 ctcttcttcctcctcctcctct 885
>ref|XR_007041.1| PREDICTED: Rattus norvegicus hypothetical protein LOC691240 (LOC691240), mRNA Length = 429 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 210 ctcttcttcctcctcctcctct 189
>ref|XM_001078517.1| PREDICTED: Rattus norvegicus hypothetical protein LOC687429 (LOC687429), mRNA Length = 615 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 363 ctcttcttcctcctcctcctct 342
>ref|XM_001068158.1| PREDICTED: Rattus norvegicus hypothetical protein LOC683945 (LOC683945), mRNA Length = 537 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 360 ctcttcttcctcctcctcctct 339 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 158 tcttcttcctcctcctcctct 138 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 204 ctcttcttcctcctcctcctc 184 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 272 tcttcttcctcctcctcctct 252 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 296 tcttcttcctcctcctcctct 276 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 473 tcttcttcctcctcctcctct 453
>ref|XM_001059535.1| PREDICTED: Rattus norvegicus hypothetical protein LOC680935 (LOC680935), mRNA Length = 351 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 336 ctcttcttcctcctcctcctct 315 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 215 tcttcttcctcctcctcctct 195
>ref|XM_001077190.1| PREDICTED: Rattus norvegicus hypothetical protein LOC691198 (LOC691198), mRNA Length = 561 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 384 ctcttcttcctcctcctcctct 363 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 146 tcttcttcctcctcctcctct 126 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 192 ctcttcttcctcctcctcctc 172 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 260 tcttcttcctcctcctcctct 240 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 284 tcttcttcctcctcctcctct 264 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 342 ctcttcttcctcctcctcctc 322 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 497 tcttcttcctcctcctcctct 477
>emb|CU013445.1| Homo sapiens RANGAP1, mRNA (cDNA clone IMAGE:100000414), complete cds, without stop codon, in Gateway system Length = 1795 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctc 28 |||||||||||||||||||||| Sbjct: 1211 gctcttcttcctcctcctcctc 1190
>emb|CU013157.1| Homo sapiens RANGAP1, mRNA (cDNA clone IMAGE:100000510), complete cds, with stop codon, in Gateway system Length = 1798 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctc 28 |||||||||||||||||||||| Sbjct: 1211 gctcttcttcctcctcctcctc 1190
>emb|CR382284.14| Zebrafish DNA sequence from clone DKEY-95H16 in linkage group 8, complete sequence Length = 205882 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 167002 ctcttcttcctcctcctcctct 167023
>ref|XM_001088267.1| PREDICTED: Macaca mulatta similar to potassium voltage-gated channel, shaker-related subfamily, member 4 (LOC697565), mRNA Length = 4174 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctc 28 |||| ||||||||||||||||||||| Sbjct: 1645 ccctcctcttcttcctcctcctcctc 1620
>ref|XM_001082107.1| PREDICTED: Macaca mulatta similar to F-box only protein 3 isoform 2, transcript variant 1 (LOC693281), mRNA Length = 5822 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 4688 ctcttcttcctcctcctcctct 4667
>ref|XM_001082483.1| PREDICTED: Macaca mulatta similar to F-box only protein 3 isoform 2, transcript variant 4 (LOC693281), mRNA Length = 7526 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 6392 ctcttcttcctcctcctcctct 6371
>ref|XM_001082360.1| PREDICTED: Macaca mulatta similar to F-box only protein 3 isoform 2, transcript variant 3 (LOC693281), mRNA Length = 2476 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1342 ctcttcttcctcctcctcctct 1321
>ref|XM_001084236.1| PREDICTED: Macaca mulatta hypothetical protein LOC695600 (LOC695600), mRNA Length = 255 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 144 ctcttcttcctcctcctcctct 123
>emb|CT571271.12| Mouse DNA sequence from clone RP23-334M10 on chromosome 9, complete sequence Length = 176303 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1570 cgccatggcggcagcggtggcg 1591 |||||||||||||||||||||| Sbjct: 25784 cgccatggcggcagcggtggcg 25763
>ref|XM_979314.1| PREDICTED: Mus musculus Alstrom syndrome 1 homolog (human) (Alms1), mRNA Length = 7593 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctctagct 33 ||||||||||||||||||||| |||| Sbjct: 57 ctcttcttcctcctcctcctccagct 32
>ref|XM_981667.1| PREDICTED: Mus musculus similar to CAGL79 (LOC381742), mRNA Length = 2919 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1776 ctcttcttcctcctcctcctct 1797
>ref|XM_355727.4| PREDICTED: Mus musculus similar to CAGL79 (LOC381742), mRNA Length = 2919 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1776 ctcttcttcctcctcctcctct 1797
>ref|XR_003985.1| PREDICTED: Mus musculus similar to CG12750-PA (LOC672753), mRNA Length = 3310 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1539 ctcttcttcctcctcctcctct 1518
>ref|XR_002143.1| PREDICTED: Mus musculus similar to CG12750-PA (LOC668119), mRNA Length = 3310 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1539 ctcttcttcctcctcctcctct 1518
>ref|XR_002141.1| PREDICTED: Mus musculus similar to CG12750-PA (LOC668115), mRNA Length = 3310 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1539 ctcttcttcctcctcctcctct 1518
>ref|XR_002140.1| PREDICTED: Mus musculus similar to CG12750-PA (LOC668113), mRNA Length = 3310 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1539 ctcttcttcctcctcctcctct 1518
>ref|XR_002138.1| PREDICTED: Mus musculus similar to CG12750-PA (LOC668107), mRNA Length = 3310 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1539 ctcttcttcctcctcctcctct 1518
>ref|XR_002136.1| PREDICTED: Mus musculus similar to CG12750-PA (LOC668100), mRNA Length = 3310 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1539 ctcttcttcctcctcctcctct 1518
>ref|XR_002134.1| PREDICTED: Mus musculus similar to CG12750-PA (LOC668096), mRNA Length = 3310 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1539 ctcttcttcctcctcctcctct 1518
>ref|XR_004883.1| PREDICTED: Mus musculus similar to CG12750-PA (LOC676142), mRNA Length = 3325 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1554 ctcttcttcctcctcctcctct 1533
>gb|DQ483822.1| Gymnogyps californianus contig 245F genomic sequence Length = 535 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 4 cctgctcttcttcctcctcctcctct 29 |||||| ||||||||||||||||||| Sbjct: 239 cctgcttttcttcctcctcctcctct 264
>gb|DQ483787.1| Gymnogyps californianus contig 210F genomic sequence Length = 536 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 4 cctgctcttcttcctcctcctcctct 29 |||||| ||||||||||||||||||| Sbjct: 300 cctgcttttcttcctcctcctcctct 275
>gb|DQ483554.1| Gymnogyps californianus contig 113D genomic sequence Length = 578 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 4 cctgctcttcttcctcctcctcctct 29 |||||| ||||||||||||||||||| Sbjct: 298 cctgcttttcttcctcctcctcctct 273
>gb|DQ483501.1| Gymnogyps californianus contig 60D genomic sequence Length = 834 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 tgctcttcttcctcctcctcct 27 |||||||||||||||||||||| Sbjct: 790 tgctcttcttcctcctcctcct 769
>gb|DQ484036.1| Gymnogyps californianus contig 202G microsatellite sequence Length = 1544 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 4 cctgctcttcttcctcctcctcctct 29 |||||| ||||||||||||||||||| Sbjct: 695 cctgcttttcttcctcctcctcctct 720
>gb|DQ483845.1| Gymnogyps californianus contig 11G genomic sequence Length = 653 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 4 cctgctcttcttcctcctcctcctct 29 |||||| ||||||||||||||||||| Sbjct: 391 cctgcttttcttcctcctcctcctct 366
>emb|CT030142.10| Mouse DNA sequence from clone RP23-422H22 on chromosome 12, complete sequence Length = 203796 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 118411 ctcttcttcctcctcctcctct 118390 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 176835 ctcttcttcctcctcctcctc 176815
>gb|AC171907.2| Capitella capitata clone JGIBGZA-5J2, complete sequence Length = 33193 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 4 cctgctcttcttcctcctcctcctct 29 ||||||| |||||||||||||||||| Sbjct: 5054 cctgctcctcttcctcctcctcctct 5079
>ref|NM_001039840.1| Homo sapiens cysteine-rich hydrophobic domain 1 (CHIC1), mRNA Length = 4158 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 257 ctcttcttcctcctcctcctct 236
>ref|XM_369075.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00169.4) partial mRNA Length = 1137 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1044 ctcttcttcctcctcctcctct 1023
>gb|AC167240.5| Mus musculus BAC clone RP24-548A13 from chromosome 7, complete sequence Length = 218177 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctc 28 |||| ||||||||||||||||||||| Sbjct: 175567 ccctcctcttcttcctcctcctcctc 175592
>gb|AC166773.7| Mus musculus chromosome 7, clone RP24-303J15, complete sequence Length = 193859 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 86333 ctcttcttcctcctcctcctct 86354
>gb|BC101582.1| Homo sapiens WD repeat domain 52, mRNA (cDNA clone MGC:126631 IMAGE:8069088), complete cds Length = 3024 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctc 28 |||||||||||||||||||||| Sbjct: 2237 gctcttcttcctcctcctcctc 2216
>gb|AC154102.15| Mus musculus chromosome 8, clone RP24-186O14, complete sequence Length = 171510 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 155197 ctcttcttcctcctcctcctct 155218
>ref|NM_003033.2| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 1 (ST3GAL1), transcript variant 1, mRNA Length = 2911 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctc 28 |||||||||||||||||||||| Sbjct: 100 gctcttcttcctcctcctcctc 79
>ref|NM_173344.1| Homo sapiens ST3 beta-galactoside alpha-2,3-sialyltransferase 1 (ST3GAL1), transcript variant 2, mRNA Length = 2708 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 gctcttcttcctcctcctcctc 28 |||||||||||||||||||||| Sbjct: 100 gctcttcttcctcctcctcctc 79
>gb|AC131975.28| Mus musculus chromosome 17, clone RP24-146B4, complete sequence Length = 175318 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 30682 ctcttcttcctcctcctcctct 30661
>gb|AC115871.8| Mus musculus chromosome 5, clone RP24-343A12, complete sequence Length = 175928 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctc 28 |||| ||||||||||||||||||||| Sbjct: 6108 ccctcctcttcttcctcctcctcctc 6133
>ref|XM_640523.1| Dictyostelium discoideum AX4 BEACH domain-containing protein (lvsB) mRNA, complete cds Length = 10902 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 756 acatgatgatttcacaaaagca 777 |||||||||||||||||||||| Sbjct: 108 acatgatgatttcacaaaagca 129
>gb|BC019218.1| Mus musculus expressed sequence AA408296, mRNA (cDNA clone MGC:29267 IMAGE:5065857), complete cds Length = 2640 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 370 ctcttcttcctcctcctcctct 349
>ref|XM_637602.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0169078) mRNA, complete cds Length = 3492 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 9 tcttcttcctcctcctcctcta 30 |||||||||||||||||||||| Sbjct: 607 tcttcttcctcctcctcctcta 628
>gb|AC122789.8| Mus musculus chromosome 5, clone RP24-258A20, complete sequence Length = 182866 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 53513 ctcttcttcctcctcctcctct 53534
>gb|AC151736.6| Mus musculus BAC clone RP23-9L16 from chromosome 8, complete sequence Length = 239812 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 62629 ctcttcttcctcctcctcctct 62608 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 157086 ctcttcttcctcctcctcctc 157066
>gb|AC163672.4| Mus musculus BAC clone RP23-23B15 from chromosome 3, complete sequence Length = 190599 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 58426 ctcttcttcctcctcctcctct 58447
>gb|AC166836.3| Mus musculus BAC clone RP23-17O23 from chromosome 10, complete sequence Length = 202804 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 87355 ctcttcttcctcctcctcctct 87376
>gb|AC155825.2| Mus musculus BAC clone RP23-54D15 from chromosome 16, complete sequence Length = 192183 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 tcttcttcctcctcctcctcta 30 |||||||||||||||||||||| Sbjct: 17597 tcttcttcctcctcctcctcta 17576
>gb|AC163703.4| Mus musculus BAC clone RP23-359B23 from chromosome 8, complete sequence Length = 219082 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 73334 ctcttcttcctcctcctcctct 73355
>gb|AC163104.2| Mus musculus BAC clone RP23-332A4 from chromosome 6, complete sequence Length = 195179 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctc 28 |||||||| ||||||||||||||||| Sbjct: 45317 ccctgctcctcttcctcctcctcctc 45342 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 9 tcttcttcctcctcctcctct 29 ||||||||||||||||||||| Sbjct: 149087 tcttcttcctcctcctcctct 149107 Score = 42.1 bits (21), Expect = 7.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctc 28 ||||||||||||||||||||| Sbjct: 149104 ctcttcttcctcctcctcctc 149124
>gb|AC166169.2| Mus musculus BAC clone RP23-193F7 from chromosome 14, complete sequence Length = 235897 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 217054 ctcttcttcctcctcctcctct 217033
>gb|AC108914.8| Mus musculus chromosome 1, clone RP23-435E15, complete sequence Length = 212494 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 gctcttcttcctcctcctcctc 28 |||||||||||||||||||||| Sbjct: 18888 gctcttcttcctcctcctcctc 18909
>gb|AC165329.8| Mus musculus chromosome 3, clone wi1-298L18, complete sequence Length = 40686 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 1457 ctcttcttcctcctcctcctct 1478
>gb|AC116792.17| Mus musculus chromosome 6, clone RP24-304O23, complete sequence Length = 155145 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 3 ccctgctcttcttcctcctcctcctc 28 |||| ||||||||||||||||||||| Sbjct: 84518 ccctcctcttcttcctcctcctcctc 84543
>gb|AC113536.10| Mus musculus chromosome 17, clone RP23-77L13, complete sequence Length = 153863 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 ccctgctcttcttcctcctcctcctc 28 |||| ||||||||||||||||||||| Sbjct: 55185 ccctcctcttcttcctcctcctcctc 55160
>gb|AC107757.15| Mus musculus chromosome 15, clone RP23-207L14, complete sequence Length = 208483 Score = 44.1 bits (22), Expect = 2.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ctcttcttcctcctcctcctct 29 |||||||||||||||||||||| Sbjct: 92823 ctcttcttcctcctcctcctct 92802
>gb|BC065971.1| Danio rerio zgc:55876, mRNA (cDNA clone MGC:77420 IMAGE:6970367), complete cds Length = 2100 Score = 44.1 bits (22), Expect = 2.0 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1577 gcggcagcggtggcggtggaggcagt 1602 |||||||||||||||| ||||||||| Sbjct: 431 gcggcagcggtggcgggggaggcagt 456 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 392,244,521 Number of extensions: 23145580 Number of successful extensions: 311364 Number of sequences better than 10.0: 3227 Number of HSP's gapped: 311299 Number of HSP's successfully gapped: 3711 Length of query: 2071 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 2048 Effective length of database: 18,503,978,556 Effective search space: 37896148082688 Effective search space used: 37896148082688 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 15 (30.2 bits)
