ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf165k19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CT833100.1| Oryza sativa (indica cultivar-group) cDNA clone:... 127 6e-26
2ref|NM_001056051.1| Oryza sativa (japonica cultivar-group) Os03g... 127 6e-26
3ref|NM_001056050.1| Oryza sativa (japonica cultivar-group) Os03g... 127 6e-26
4gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare str... 127 6e-26
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 127 6e-26
6dbj|AK072703.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 6e-26
7dbj|AK064767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 6e-26
8dbj|AK062662.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 6e-26
9gb|DQ060243.1| Zea mays stress inducible protein coi6.1 gene, co... 92 4e-15
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.75
11dbj|AP005506.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.75
12dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.75
13emb|BX005106.5| Zebrafish DNA sequence from clone DKEY-188I13, c... 44 0.75
14gb|AC008012.8| Homo sapiens 12p13 BAC RPCI11-388F6 (Roswell Park... 42 3.0
15emb|AL139163.16| Human DNA sequence from clone RP11-523O15 on ch... 42 3.0
16emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete ... 42 3.0
17gb|AC126804.3| Mus musculus BAC clone RP23-3F1 from 9, complete ... 42 3.0 
>emb|CT833100.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105K01, full
           insert sequence
          Length = 1327
 Score =  127 bits (64), Expect = 6e-26
 Identities = 124/140 (88%), Gaps = 3/140 (2%)
 Strand = Plus / Plus

                                                                       
Query: 311 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 370
           ||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||| || 
Sbjct: 314 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 371

                                                                       
Query: 371 tcttgcctgttggttccgatcagatctgttggtgtgtgcgcgtgcgatttgggtatcgca 430
           |||||||||||||||  |||| ||||||||||| |||||| ||| |||||||| ||||||
Sbjct: 372 tcttgcctgttggttttgatcggatctgttggt-tgtgcgtgtgtgatttggggatcgca 430

                               
Query: 431 tgcggggggaagctaacctt 450
            | | |||||||||||||||
Sbjct: 431 cgtgcggggaagctaacctt 450



 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                                
Query: 231 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 283
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 234 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 286
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>ref|NM_001056051.1| Oryza sativa (japonica cultivar-group) Os03g0241300 (Os03g0241300)
           mRNA, complete cds
          Length = 2755

 Score =  127 bits (64), Expect = 6e-26
 Identities = 124/140 (88%), Gaps = 3/140 (2%)
 Strand = Plus / Plus

                                                                       
Query: 311 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 370
           ||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||| || 
Sbjct: 315 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 372

                                                                       
Query: 371 tcttgcctgttggttccgatcagatctgttggtgtgtgcgcgtgcgatttgggtatcgca 430
           |||||||||||||||  |||| ||||||||||| |||||| ||| |||||||| ||||||
Sbjct: 373 tcttgcctgttggttttgatcggatctgttggt-tgtgcgtgtgtgatttggggatcgca 431

                               
Query: 431 tgcggggggaagctaacctt 450
            | | |||||||||||||||
Sbjct: 432 cgtgcggggaagctaacctt 451



 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                                
Query: 231 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 283
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 235 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 287
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>ref|NM_001056050.1| Oryza sativa (japonica cultivar-group) Os03g0241400 (Os03g0241400)
           mRNA, complete cds
          Length = 1123

 Score =  127 bits (64), Expect = 6e-26
 Identities = 124/140 (88%), Gaps = 3/140 (2%)
 Strand = Plus / Minus

                                                                       
Query: 311 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 370
           ||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||| || 
Sbjct: 813 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 756

                                                                       
Query: 371 tcttgcctgttggttccgatcagatctgttggtgtgtgcgcgtgcgatttgggtatcgca 430
           |||||||||||||||  |||| ||||||||||| |||||| ||| |||||||| ||||||
Sbjct: 755 tcttgcctgttggttttgatcggatctgttggt-tgtgcgtgtgtgatttggggatcgca 697

                               
Query: 431 tgcggggggaagctaacctt 450
            | | |||||||||||||||
Sbjct: 696 cgtgcggggaagctaacctt 677



 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 52/53 (98%)
 Strand = Plus / Minus

                                                                
Query: 231 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 283
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 893 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 841
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>gb|AC136136.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0071C04, from chromosome 3, complete sequence
          Length = 126078

 Score =  127 bits (64), Expect = 6e-26
 Identities = 124/140 (88%), Gaps = 3/140 (2%)
 Strand = Plus / Plus

                                                                         
Query: 311   cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 370
             ||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||| || 
Sbjct: 88845 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 88902

                                                                         
Query: 371   tcttgcctgttggttccgatcagatctgttggtgtgtgcgcgtgcgatttgggtatcgca 430
             |||||||||||||||  |||| ||||||||||| |||||| ||| |||||||| ||||||
Sbjct: 88903 tcttgcctgttggttttgatcggatctgttggt-tgtgcgtgtgtgatttggggatcgca 88961

                                 
Query: 431   tgcggggggaagctaacctt 450
              | | |||||||||||||||
Sbjct: 88962 cgtgcggggaagctaacctt 88981



 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                                  
Query: 231   catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 283
             ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 88765 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 88817
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score =  127 bits (64), Expect = 6e-26
 Identities = 124/140 (88%), Gaps = 3/140 (2%)
 Strand = Plus / Plus

                                                                           
Query: 311     cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 370
               ||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||| || 
Sbjct: 7448125 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 7448182

                                                                           
Query: 371     tcttgcctgttggttccgatcagatctgttggtgtgtgcgcgtgcgatttgggtatcgca 430
               |||||||||||||||  |||| ||||||||||| |||||| ||| |||||||| ||||||
Sbjct: 7448183 tcttgcctgttggttttgatcggatctgttggt-tgtgcgtgtgtgatttggggatcgca 7448241

                                   
Query: 431     tgcggggggaagctaacctt 450
                | | |||||||||||||||
Sbjct: 7448242 cgtgcggggaagctaacctt 7448261



 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                                    
Query: 231     catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 283
               ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 7448045 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 7448097
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>dbj|AK072703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135J11, full
           insert sequence
          Length = 1125

 Score =  127 bits (64), Expect = 6e-26
 Identities = 124/140 (88%), Gaps = 3/140 (2%)
 Strand = Plus / Plus

                                                                       
Query: 311 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 370
           ||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||| || 
Sbjct: 313 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 370

                                                                       
Query: 371 tcttgcctgttggttccgatcagatctgttggtgtgtgcgcgtgcgatttgggtatcgca 430
           |||||||||||||||  |||| ||||||||||| |||||| ||| |||||||| ||||||
Sbjct: 371 tcttgcctgttggttttgatcggatctgttggt-tgtgcgtgtgtgatttggggatcgca 429

                               
Query: 431 tgcggggggaagctaacctt 450
            | | |||||||||||||||
Sbjct: 430 cgtgcggggaagctaacctt 449



 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                                
Query: 231 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 283
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 233 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 285
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>dbj|AK064767.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000A02, full
           insert sequence
          Length = 2755

 Score =  127 bits (64), Expect = 6e-26
 Identities = 124/140 (88%), Gaps = 3/140 (2%)
 Strand = Plus / Plus

                                                                       
Query: 311 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 370
           ||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||| || 
Sbjct: 316 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 373

                                                                       
Query: 371 tcttgcctgttggttccgatcagatctgttggtgtgtgcgcgtgcgatttgggtatcgca 430
           |||||||||||||||  |||| ||||||||||| |||||| ||| |||||||| ||||||
Sbjct: 374 tcttgcctgttggttttgatcggatctgttggt-tgtgcgtgtgtgatttggggatcgca 432

                               
Query: 431 tgcggggggaagctaacctt 450
            | | |||||||||||||||
Sbjct: 433 cgtgcggggaagctaacctt 452



 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                                
Query: 231 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 283
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 236 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 288
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>dbj|AK062662.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F06, full
           insert sequence
          Length = 732

 Score =  127 bits (64), Expect = 6e-26
 Identities = 124/140 (88%), Gaps = 3/140 (2%)
 Strand = Plus / Plus

                                                                       
Query: 311 cgacctctaaggtttgttgaaccatcggatttacaacacgcacgtccccggatcatgtgt 370
           ||||| |||||||||||||||||||||||||||| ||||||||||  ||||||||| || 
Sbjct: 314 cgaccactaaggtttgttgaaccatcggatttac-acacgcacgt-gccggatcatttgc 371

                                                                       
Query: 371 tcttgcctgttggttccgatcagatctgttggtgtgtgcgcgtgcgatttgggtatcgca 430
           |||||||||||||||  |||| ||||||||||| |||||| ||| |||||||| ||||||
Sbjct: 372 tcttgcctgttggttttgatcggatctgttggt-tgtgcgtgtgtgatttggggatcgca 430

                               
Query: 431 tgcggggggaagctaacctt 450
            | | |||||||||||||||
Sbjct: 431 cgtgcggggaagctaacctt 450



 Score = 97.6 bits (49), Expect = 6e-17
 Identities = 52/53 (98%)
 Strand = Plus / Plus

                                                                
Query: 231 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtgg 283
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 234 catgtcgaggtgcttcccctacccgccgccggggtacgtgcgaaacccagtgg 286
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>gb|DQ060243.1| Zea mays stress inducible protein coi6.1 gene, complete cds
          Length = 3418

 Score = 91.7 bits (46), Expect = 4e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                     
Query: 231 catgtcgaggtgcttcccctacccgccgccgggctacgtgcgaaacccagtggccgtg 288
           ||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||
Sbjct: 662 catgtcgaggtgcttcccctacccgccaccggggtacgtgcggaacccagtggccgtg 719



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 46/50 (92%), Gaps = 1/50 (2%)
 Strand = Plus / Plus

                                                             
Query: 306 ggagacgacctctaaggtttgttgaaccatcggatttacaacacgcacgt 355
           |||| ||||| ||||||||||||||||| |||||||||| ||||||||||
Sbjct: 728 ggagtcgaccgctaaggtttgttgaaccttcggatttac-acacgcacgt 776
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8
          Length = 28434780

 Score = 44.1 bits (22), Expect = 0.75
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 706     ttgctagttttggtactaaatctcag 731
               ||||||||||||||||| ||||||||
Sbjct: 2451392 ttgctagttttggtacttaatctcag 2451417
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>dbj|AP005506.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0665F09
          Length = 147102

 Score = 44.1 bits (22), Expect = 0.75
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 706   ttgctagttttggtactaaatctcag 731
             ||||||||||||||||| ||||||||
Sbjct: 13021 ttgctagttttggtacttaatctcag 13046
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>dbj|AP004381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0025F03
          Length = 138042

 Score = 44.1 bits (22), Expect = 0.75
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 706    ttgctagttttggtactaaatctcag 731
              ||||||||||||||||| ||||||||
Sbjct: 127362 ttgctagttttggtacttaatctcag 127387
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>emb|BX005106.5| Zebrafish DNA sequence from clone DKEY-188I13, complete sequence
          Length = 216863

 Score = 44.1 bits (22), Expect = 0.75
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 552    taacctgaatgcaaacatacat 573
              ||||||||||||||||||||||
Sbjct: 189362 taacctgaatgcaaacatacat 189383
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>gb|AC008012.8| Homo sapiens 12p13 BAC RPCI11-388F6 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 170200

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 542   aaattggaaataacctgaatg 562
             |||||||||||||||||||||
Sbjct: 96409 aaattggaaataacctgaatg 96429
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>emb|AL139163.16| Human DNA sequence from clone RP11-523O15 on chromosome 20 Contains
             GSSs and STSs, complete sequence
          Length = 48205

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 725   atctcagttaaaaattctcct 745
             |||||||||||||||||||||
Sbjct: 22011 atctcagttaaaaattctcct 21991
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>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 241    tgcttcccctacccgccgccg 261
              |||||||||||||||||||||
Sbjct: 161605 tgcttcccctacccgccgccg 161625
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>gb|AC126804.3| Mus musculus BAC clone RP23-3F1 from 9, complete sequence
          Length = 223991

 Score = 42.1 bits (21), Expect = 3.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    ttcccctcccctccccgtgaa 73
             |||||||||||||||||||||
Sbjct: 96697 ttcccctcccctccccgtgaa 96677


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 117,056,640
Number of extensions: 6162049
Number of successful extensions: 210885
Number of sequences better than 10.0: 17
Number of HSP's gapped: 210869
Number of HSP's successfully gapped: 26
Length of query: 788
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 766
Effective length of database: 18,508,616,841
Effective search space: 14177600500206
Effective search space used: 14177600500206
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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