ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf163c14 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT829903.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN077M24, full insert sequence Length = 569 Score = 246 bits (124), Expect = 1e-61 Identities = 187/208 (89%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 126 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 185 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 186 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 245 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| ||||||| ||||||||| || ||||||||||||| |||||||||||| || ||||| Sbjct: 246 ggcctctccatcctcgtccactccatcatctacttcgcgctcatcgccatcttcctcctc 305 Query: 362 gccgtcaacgtccacgtctacatcggct 389 ||||||||||||||| | ||| |||||| Sbjct: 306 gccgtcaacgtccacatgtacctcggct 333
>ref|NM_001074468.1| Oryza sativa (japonica cultivar-group) Os11g0496500 (Os11g0496500) mRNA, complete cds Length = 562 Score = 246 bits (124), Expect = 1e-61 Identities = 187/208 (89%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 103 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 162 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 163 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 222 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| ||||||| ||||||||| || ||||||||||||| |||||||||||| || ||||| Sbjct: 223 ggcctctccatcctcgtccactccatcatctacttcgcgctcatcgccatcttcctcctc 282 Query: 362 gccgtcaacgtccacgtctacatcggct 389 ||||||||||||||| | ||| |||||| Sbjct: 283 gccgtcaacgtccacatgtacctcggct 310
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 246 bits (124), Expect = 1e-61 Identities = 187/208 (89%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 99087 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 99146 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 99147 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 99206 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| ||||||| ||||||||| || ||||||||||||| |||||||||||| || ||||| Sbjct: 99207 ggcctctccatcctcgtccactccatcatctacttcgcgctcatcgccatcttcctcctc 99266 Query: 362 gccgtcaacgtccacgtctacatcggct 389 ||||||||||||||| | ||| |||||| Sbjct: 99267 gccgtcaacgtccacatgtacctcggct 99294
>gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018F17, complete sequence Length = 104291 Score = 246 bits (124), Expect = 1e-61 Identities = 187/208 (89%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 5387 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 5446 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 5447 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 5506 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| ||||||| ||||||||| || ||||||||||||| |||||||||||| || ||||| Sbjct: 5507 ggcctctccatcctcgtccactccatcatctacttcgcgctcatcgccatcttcctcctc 5566 Query: 362 gccgtcaacgtccacgtctacatcggct 389 ||||||||||||||| | ||| |||||| Sbjct: 5567 gccgtcaacgtccacatgtacctcggct 5594
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 246 bits (124), Expect = 1e-61 Identities = 187/208 (89%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 17031431 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 17031490 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 17031491 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 17031550 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| ||||||| ||||||||| || ||||||||||||| |||||||||||| || ||||| Sbjct: 17031551 ggcctctccatcctcgtccactccatcatctacttcgcgctcatcgccatcttcctcctc 17031610 Query: 362 gccgtcaacgtccacgtctacatcggct 389 ||||||||||||||| | ||| |||||| Sbjct: 17031611 gccgtcaacgtccacatgtacctcggct 17031638
>dbj|AK062973.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E07, full insert sequence Length = 562 Score = 246 bits (124), Expect = 1e-61 Identities = 187/208 (89%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| |||||||||||| ||||||||||| |||||||| || ||||||||| Sbjct: 103 atggcggattgggggccggtgttcatagggctggtgctgttcatcctgctgtcgccgggg 162 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| |||||||||| || ||||| ||||| ||||||||||||||||||||||||||| Sbjct: 163 ctgctgttccagatcccggggaaggggaggatcgtggagttcggcaacttccagaccagc 222 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| ||||||| ||||||||| || ||||||||||||| |||||||||||| || ||||| Sbjct: 223 ggcctctccatcctcgtccactccatcatctacttcgcgctcatcgccatcttcctcctc 282 Query: 362 gccgtcaacgtccacgtctacatcggct 389 ||||||||||||||| | ||| |||||| Sbjct: 283 gccgtcaacgtccacatgtacctcggct 310
>gb|AY108687.1| Zea mays PCO149432 mRNA sequence Length = 666 Score = 238 bits (120), Expect = 2e-59 Identities = 189/212 (89%) Strand = Plus / Plus Query: 178 cggcatggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgcc 237 ||||||||||||||||| ||||||| | ||||||||||||||||||||||| ||||| || Sbjct: 151 cggcatggcggactgggggccggtgctgatcgggctggtgctcttcatcctgctctcccc 210 Query: 238 ggggctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagac 297 ||| ||||| |||||||||||||||||||| |||| | |||||||||||||||||||| Sbjct: 211 gggcctgctcttccagatccccggcaagggccggatcatcgagttcggcaacttccagac 270 Query: 298 cagcggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcat 357 ||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||| || | Sbjct: 271 cagcggcctctccatcctcatccacgccgtcatctacttcgccctcctcgccatcttcct 330 Query: 358 cctcgccgtcaacgtccacgtctacatcggct 389 |||||||||| ||||||| | ||| |||||| Sbjct: 331 cctcgccgtcggcgtccacatttacctcggct 362
>gb|DQ244330.1| Zea mays clone 4934 mRNA sequence Length = 539 Score = 167 bits (84), Expect = 7e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 188 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 247 |||||||||||||||||| || |||||||||||||||||| || |||||||| |||||| Sbjct: 167 gactgggcgccggtgttcgtctcgctggtgctcttcatcctgctgtcgccgggcctgctg 226 Query: 248 ctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagcggcatc 307 ||||||| || |||||| || |||| | ||||||||||||||||||||||||| |||| Sbjct: 227 ttccagatgccgggcaagtgccggatcatcgagttcggcaacttccagaccagcgccatc 286 Query: 308 tccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctcgccgtc 367 ||||| |||||||||||| || ||| |||||||||| ||||||| || || |||||||| Sbjct: 287 tccatcctcgtccacgccatcctcttcttcgccctcgccgccatcttcctcgtcgccgtc 346
>emb|CT829898.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI014N17, full insert sequence Length = 513 Score = 109 bits (55), Expect = 1e-20 Identities = 118/139 (84%) Strand = Plus / Plus Query: 214 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 273 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 149 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 208 Query: 274 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatcta 333 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| || || ||| Sbjct: 209 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccacaccatcctctt 268 Query: 334 cttcgccctcatcgccatc 352 |||||||||| ||||||| Sbjct: 269 cttcgccctcgacgccatc 287
>ref|NM_001060928.1| Oryza sativa (japonica cultivar-group) Os05g0103300 (Os05g0103300) mRNA, complete cds Length = 682 Score = 109 bits (55), Expect = 1e-20 Identities = 118/139 (84%) Strand = Plus / Plus Query: 214 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 273 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 151 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 210 Query: 274 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatcta 333 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| || || ||| Sbjct: 211 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccacaccatcctctt 270 Query: 334 cttcgccctcatcgccatc 352 |||||||||| ||||||| Sbjct: 271 cttcgccctcgacgccatc 289
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 109 bits (55), Expect = 1e-20 Identities = 118/139 (84%) Strand = Plus / Plus Query: 214 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 273 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 158575 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 158634 Query: 274 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatcta 333 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| || || ||| Sbjct: 158635 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccacaccatcctctt 158694 Query: 334 cttcgccctcatcgccatc 352 |||||||||| ||||||| Sbjct: 158695 cttcgccctcgacgccatc 158713 Score = 69.9 bits (35), Expect = 1e-08 Identities = 128/159 (80%) Strand = Plus / Plus Query: 188 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 247 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 162130 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 162189 Query: 248 ctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagcggcatc 307 ||||| ||||||| | | | | || |||||||||||| | || ||||||| ||| Sbjct: 162190 atccagctccccgggaggcaccacttcgtcgagttcggcaacctgcacaccagcgccatg 162249 Query: 308 tccatactcgtccacgccgtcatctacttcgccctcatc 346 ||||| |||||||| || |||||||||||||||||||| Sbjct: 162250 tccatcgtcgtccactccatcatctacttcgccctcatc 162288
>dbj|AK062996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-G10, full insert sequence Length = 517 Score = 109 bits (55), Expect = 1e-20 Identities = 118/139 (84%) Strand = Plus / Plus Query: 214 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 273 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 149 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 208 Query: 274 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatcta 333 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| || || ||| Sbjct: 209 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccacaccatcctctt 268 Query: 334 cttcgccctcatcgccatc 352 |||||||||| ||||||| Sbjct: 269 cttcgccctcgacgccatc 287
>gb|AC084818.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668H12, complete sequence Length = 160603 Score = 109 bits (55), Expect = 1e-20 Identities = 118/139 (84%) Strand = Plus / Plus Query: 214 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 273 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 40759 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 40818 Query: 274 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatcta 333 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| || || ||| Sbjct: 40819 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccacaccatcctctt 40878 Query: 334 cttcgccctcatcgccatc 352 |||||||||| ||||||| Sbjct: 40879 cttcgccctcgacgccatc 40897 Score = 69.9 bits (35), Expect = 1e-08 Identities = 128/159 (80%) Strand = Plus / Plus Query: 188 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 247 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 44314 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 44373 Query: 248 ctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagcggcatc 307 ||||| ||||||| | | | | || |||||||||||| | || ||||||| ||| Sbjct: 44374 atccagctccccgggaggcaccacttcgtcgagttcggcaacctgcacaccagcgccatg 44433 Query: 308 tccatactcgtccacgccgtcatctacttcgccctcatc 346 ||||| |||||||| || |||||||||||||||||||| Sbjct: 44434 tccatcgtcgtccactccatcatctacttcgccctcatc 44472
>dbj|AK071540.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101E05, full insert sequence Length = 683 Score = 105 bits (53), Expect = 2e-19 Identities = 110/129 (85%) Strand = Plus / Plus Query: 214 ggtgctcttcatcctcctctcgccggggctgctgctccagatccccggcaagggcaggat 273 |||||| |||||||| || ||||||||||| ||| ||||||| || |||||| ||||| | Sbjct: 152 ggtgctgttcatcctgctgtcgccggggcttctgttccagataccaggcaagtgcaggtt 211 Query: 274 ggtggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatcta 333 | | ||||||||||| ||||||||||||| | ||||||| ||||||||| || || ||| Sbjct: 212 gatcgagttcggcaagttccagaccagcgtcgtctccatcctcgtccacaccatcctctt 271 Query: 334 cttcgccct 342 ||||||||| Sbjct: 272 cttcgccct 280
>emb|CT833862.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA031G18, full insert sequence Length = 497 Score = 81.8 bits (41), Expect = 3e-12 Identities = 161/201 (80%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 89 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 148 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 149 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 208 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| || || | ||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 209 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatcttcctcatc 268 Query: 362 gccgtcaacgtccacgtctac 382 ||| || ||||||| ||||| Sbjct: 269 gccatcggcgtccacatctac 289
>ref|NM_001053460.1| Oryza sativa (japonica cultivar-group) Os02g0508100 (Os02g0508100) mRNA, complete cds Length = 536 Score = 81.8 bits (41), Expect = 3e-12 Identities = 161/201 (80%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 110 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 169 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 170 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 229 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| || || | ||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 230 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatcttcctcatc 289 Query: 362 gccgtcaacgtccacgtctac 382 ||| || ||||||| ||||| Sbjct: 290 gccatcggcgtccacatctac 310
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 81.8 bits (41), Expect = 3e-12 Identities = 161/201 (80%) Strand = Plus / Minus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 18245747 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 18245688 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 18245687 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 18245628 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| || || | ||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 18245627 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatcttcctcatc 18245568 Query: 362 gccgtcaacgtccacgtctac 382 ||| || ||||||| ||||| Sbjct: 18245567 gccatcggcgtccacatctac 18245547 Score = 63.9 bits (32), Expect = 8e-07 Identities = 164/208 (78%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 ||||||||||||||||||||| | | ||| ||||||| ||| | || |||||||||||| Sbjct: 18311316 atggcggactgggcgccggtggtggtgggggtggtgctgttcgtgctgctctcgccgggg 18311375 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| | || ||||||||| | | | || || ||||||| ||||| |||| | Sbjct: 18311376 ctgctggtggagctccccggcacgcaccgccacgtcgacttcggcagcttccgcaccaac 18311435 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 |||| |||| |||||||| || |||||| ||||||| | |||||||||||| |||| Sbjct: 18311436 ggcaaggccatcttcgtccacaccctcatcttcttcgccgccttcgccatcctcaccctc 18311495 Query: 362 gccgtcaacgtccacgtctacatcggct 389 ||| || || ||||| |||||| ||||| Sbjct: 18311496 gccctccacctccacatctacaccggct 18311523 Score = 58.0 bits (29), Expect = 5e-05 Identities = 118/145 (81%), Gaps = 2/145 (1%) Strand = Plus / Plus Query: 221 ttcatcctcctctcgccggggctgctgctccagatccccggcaagggc-aggatggtgga 279 |||||||| || ||||||||||| ||| ||||| | || ||| ||| | ||| ||||||| Sbjct: 18281686 ttcatcctgctgtcgccggggcttctgttccaggtgcc-ggcgaggacgagggtggtgga 18281744 Query: 280 gttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctacttcgc 339 |||||||||| | ||||||||| ||||| | ||||||||||||||| ||| ||||| Sbjct: 18281745 gttcggcaacatgtgcaccagcggcgtctccgtcctcgtccacgccgtcttcttcttcgt 18281804 Query: 340 cctcatcgccatcctcatcctcgcc 364 |||| || || ||||| || ||||| Sbjct: 18281805 cctcttcaccgtcctcgtcgtcgcc 18281829
>dbj|AP005841.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0052M16 Length = 145423 Score = 81.8 bits (41), Expect = 3e-12 Identities = 161/201 (80%) Strand = Plus / Minus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 46960 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 46901 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 46900 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 46841 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| || || | ||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 46840 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatcttcctcatc 46781 Query: 362 gccgtcaacgtccacgtctac 382 ||| || ||||||| ||||| Sbjct: 46780 gccatcggcgtccacatctac 46760 Score = 63.9 bits (32), Expect = 8e-07 Identities = 164/208 (78%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 ||||||||||||||||||||| | | ||| ||||||| ||| | || |||||||||||| Sbjct: 112529 atggcggactgggcgccggtggtggtgggggtggtgctgttcgtgctgctctcgccgggg 112588 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| | || ||||||||| | | | || || ||||||| ||||| |||| | Sbjct: 112589 ctgctggtggagctccccggcacgcaccgccacgtcgacttcggcagcttccgcaccaac 112648 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 |||| |||| |||||||| || |||||| ||||||| | |||||||||||| |||| Sbjct: 112649 ggcaaggccatcttcgtccacaccctcatcttcttcgccgccttcgccatcctcaccctc 112708 Query: 362 gccgtcaacgtccacgtctacatcggct 389 ||| || || ||||| |||||| ||||| Sbjct: 112709 gccctccacctccacatctacaccggct 112736 Score = 58.0 bits (29), Expect = 5e-05 Identities = 118/145 (81%), Gaps = 2/145 (1%) Strand = Plus / Plus Query: 221 ttcatcctcctctcgccggggctgctgctccagatccccggcaagggc-aggatggtgga 279 |||||||| || ||||||||||| ||| ||||| | || ||| ||| | ||| ||||||| Sbjct: 82899 ttcatcctgctgtcgccggggcttctgttccaggtgcc-ggcgaggacgagggtggtgga 82957 Query: 280 gttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctacttcgc 339 |||||||||| | ||||||||| ||||| | ||||||||||||||| ||| ||||| Sbjct: 82958 gttcggcaacatgtgcaccagcggcgtctccgtcctcgtccacgccgtcttcttcttcgt 83017 Query: 340 cctcatcgccatcctcatcctcgcc 364 |||| || || ||||| || ||||| Sbjct: 83018 cctcttcaccgtcctcgtcgtcgcc 83042
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0047E05 Length = 184323 Score = 81.8 bits (41), Expect = 3e-12 Identities = 161/201 (80%) Strand = Plus / Minus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 169148 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 169089 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 169088 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 169029 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| || || | ||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 169028 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatcttcctcatc 168969 Query: 362 gccgtcaacgtccacgtctac 382 ||| || ||||||| ||||| Sbjct: 168968 gccatcggcgtccacatctac 168948
>dbj|AK121771.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033092F10, full insert sequence Length = 538 Score = 81.8 bits (41), Expect = 3e-12 Identities = 161/201 (80%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 112 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 171 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 172 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 231 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| || || | ||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 232 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatcttcctcatc 291 Query: 362 gccgtcaacgtccacgtctac 382 ||| || ||||||| ||||| Sbjct: 292 gccatcggcgtccacatctac 312
>dbj|AK063931.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D03, full insert sequence Length = 530 Score = 81.8 bits (41), Expect = 3e-12 Identities = 161/201 (80%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 |||||||| |||| ||||||| | |||| | |||||| ||| | || ||| |||||||| Sbjct: 88 atggcggattgggggccggtggtgatcgcgacggtgctgttcgtgctgctcacgccgggg 147 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| ||||| | || | | ||| |||| |||| ||||||| | | || |||||| Sbjct: 148 ctgctgttccagctgccggcgcacggccggatcgtgggcttcggcaccatgcacaccagc 207 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 ||| || || | ||||||||||||||||||||||||||||||||| ||||| || || || Sbjct: 208 ggcgtcgccgtcctcgtccacgccgtcatctacttcgccctcatcaccatcttcctcatc 267 Query: 362 gccgtcaacgtccacgtctac 382 ||| || ||||||| ||||| Sbjct: 268 gccatcggcgtccacatctac 288
>gb|DQ245659.1| Zea mays clone 18877 mRNA sequence Length = 587 Score = 77.8 bits (39), Expect = 5e-11 Identities = 75/87 (86%) Strand = Plus / Plus Query: 296 accagcggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctc 355 |||||||||||| |||| ||||||||||||||| |||||||||| |||||| ||||| || Sbjct: 293 accagcggcatcgccatcctcgtccacgccgtcctctacttcgcgctcatcaccatcttc 352 Query: 356 atcctcgccgtcaacgtccacgtctac 382 || ||||| || ||||||| ||||| Sbjct: 353 ctcatcgccatcggcgtccacatctac 379
>ref|NM_001060929.1| Oryza sativa (japonica cultivar-group) Os05g0103400 (Os05g0103400) mRNA, complete cds Length = 637 Score = 69.9 bits (35), Expect = 1e-08 Identities = 128/159 (80%) Strand = Plus / Plus Query: 188 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 247 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 185 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 244 Query: 248 ctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagcggcatc 307 ||||| ||||||| | | | | || |||||||||||| | || ||||||| ||| Sbjct: 245 atccagctccccgggaggcaccacttcgtcgagttcggcaacctgcacaccagcgccatg 304 Query: 308 tccatactcgtccacgccgtcatctacttcgccctcatc 346 ||||| |||||||| || |||||||||||||||||||| Sbjct: 305 tccatcgtcgtccactccatcatctacttcgccctcatc 343
>ref|NM_001051772.1| Oryza sativa (japonica cultivar-group) Os01g0923200 (Os01g0923200) mRNA, complete cds Length = 524 Score = 69.9 bits (35), Expect = 1e-08 Identities = 121/147 (82%), Gaps = 2/147 (1%) Strand = Plus / Plus Query: 233 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 291 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 148 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 206 Query: 292 ccagaccagcggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccat 351 ||||||| |||| |||| ||||||||||||||||||| |||| |||| || |||| Sbjct: 207 ggcaaccagcgccatcgccatcctcgtccacgccgtcatcttcttctgcctcctcaccat 266 Query: 352 cctcatcctcgccgtcaacgtccacgt 378 | || || ||||| || ||||||||| Sbjct: 267 cttcgtcgtcgccatcggcgtccacgt 293
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 69.9 bits (35), Expect = 1e-08 Identities = 121/147 (82%), Gaps = 2/147 (1%) Strand = Plus / Plus Query: 233 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 291 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 40371673 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 40371731 Query: 292 ccagaccagcggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccat 351 ||||||| |||| |||| ||||||||||||||||||| |||| |||| || |||| Sbjct: 40371732 ggcaaccagcgccatcgccatcctcgtccacgccgtcatcttcttctgcctcctcaccat 40371791 Query: 352 cctcatcctcgccgtcaacgtccacgt 378 | || || ||||| || ||||||||| Sbjct: 40371792 cttcgtcgtcgccatcggcgtccacgt 40371818
>dbj|AP006167.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1455F06 Length = 140848 Score = 69.9 bits (35), Expect = 1e-08 Identities = 121/147 (82%), Gaps = 2/147 (1%) Strand = Plus / Plus Query: 233 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 291 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 80637 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 80695 Query: 292 ccagaccagcggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccat 351 ||||||| |||| |||| ||||||||||||||||||| |||| |||| || |||| Sbjct: 80696 ggcaaccagcgccatcgccatcctcgtccacgccgtcatcttcttctgcctcctcaccat 80755 Query: 352 cctcatcctcgccgtcaacgtccacgt 378 | || || ||||| || ||||||||| Sbjct: 80756 cttcgtcgtcgccatcggcgtccacgt 80782
>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0592G05 Length = 146220 Score = 69.9 bits (35), Expect = 1e-08 Identities = 121/147 (82%), Gaps = 2/147 (1%) Strand = Plus / Plus Query: 233 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 291 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 22914 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 22972 Query: 292 ccagaccagcggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccat 351 ||||||| |||| |||| ||||||||||||||||||| |||| |||| || |||| Sbjct: 22973 ggcaaccagcgccatcgccatcctcgtccacgccgtcatcttcttctgcctcctcaccat 23032 Query: 352 cctcatcctcgccgtcaacgtccacgt 378 | || || ||||| || ||||||||| Sbjct: 23033 cttcgtcgtcgccatcggcgtccacgt 23059
>dbj|AK066339.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062F19, full insert sequence Length = 641 Score = 69.9 bits (35), Expect = 1e-08 Identities = 128/159 (80%) Strand = Plus / Plus Query: 188 gactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccggggctgctg 247 ||||||| ||||||| | |||| | ||||||| ||| | || ||||||||||||||||| Sbjct: 189 gactgggggccggtggtgatcgcggtggtgctgttcgtgctgctctcgccggggctgctc 248 Query: 248 ctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagcggcatc 307 ||||| ||||||| | | | | || |||||||||||| | || ||||||| ||| Sbjct: 249 atccagctccccgggaggcaccacttcgtcgagttcggcaacctgcacaccagcgccatg 308 Query: 308 tccatactcgtccacgccgtcatctacttcgccctcatc 346 ||||| |||||||| || |||||||||||||||||||| Sbjct: 309 tccatcgtcgtccactccatcatctacttcgccctcatc 347
>dbj|AK060288.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-C11, full insert sequence Length = 524 Score = 69.9 bits (35), Expect = 1e-08 Identities = 121/147 (82%), Gaps = 2/147 (1%) Strand = Plus / Plus Query: 233 tcgccggggctgctgctccagatccccggcaagggc-aggatggtggagttcggcaactt 291 ||||||||||||||| ||||| | || ||| ||||| ||| ||||||||||||||||| | Sbjct: 148 tcgccggggctgctgttccagctgcc-ggcgagggcgagggtggtggagttcggcaacat 206 Query: 292 ccagaccagcggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccat 351 ||||||| |||| |||| ||||||||||||||||||| |||| |||| || |||| Sbjct: 207 ggcaaccagcgccatcgccatcctcgtccacgccgtcatcttcttctgcctcctcaccat 266 Query: 352 cctcatcctcgccgtcaacgtccacgt 378 | || || ||||| || ||||||||| Sbjct: 267 cttcgtcgtcgccatcggcgtccacgt 293
>emb|CR855097.1| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence Length = 86134 Score = 67.9 bits (34), Expect = 5e-08 Identities = 88/106 (83%) Strand = Plus / Minus Query: 277 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 336 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 57246 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 57187 Query: 337 cgccctcatcgccatcctcatcctcgccgtcaacgtccacgtctac 382 ||| ||| || ||||| || || ||||| || ||||||| ||||| Sbjct: 57186 cgcgctcctcaccatcttcctcatcgccatcggcgtccacatctac 57141
>ref|NM_001059163.1| Oryza sativa (japonica cultivar-group) Os04g0387600 (Os04g0387600) mRNA, complete cds Length = 504 Score = 67.9 bits (34), Expect = 5e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 277 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 336 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 143 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 202 Query: 337 cgccctcatcgccatcctcatcctcgccgtcaacgtccacgtctac 382 ||| ||| || ||||| || || ||||| || ||||||| ||||| Sbjct: 203 cgcactcctcaccatcttcctcatcgccatcggcgtccacatctac 248
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 67.9 bits (34), Expect = 5e-08 Identities = 88/106 (83%) Strand = Plus / Minus Query: 277 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 336 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 19072818 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 19072759 Query: 337 cgccctcatcgccatcctcatcctcgccgtcaacgtccacgtctac 382 ||| ||| || ||||| || || ||||| || ||||||| ||||| Sbjct: 19072758 cgcactcctcaccatcttcctcatcgccatcggcgtccacatctac 19072713
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 67.9 bits (34), Expect = 5e-08 Identities = 88/106 (83%) Strand = Plus / Minus Query: 277 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 336 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 164743 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 164684 Query: 337 cgccctcatcgccatcctcatcctcgccgtcaacgtccacgtctac 382 ||| ||| || ||||| || || ||||| || ||||||| ||||| Sbjct: 164683 cgcactcctcaccatcttcctcatcgccatcggcgtccacatctac 164638
>dbj|AK063862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-D12, full insert sequence Length = 504 Score = 67.9 bits (34), Expect = 5e-08 Identities = 88/106 (83%) Strand = Plus / Plus Query: 277 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 336 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 143 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 202 Query: 337 cgccctcatcgccatcctcatcctcgccgtcaacgtccacgtctac 382 ||| ||| || ||||| || || ||||| || ||||||| ||||| Sbjct: 203 cgcactcctcaccatcttcctcatcgccatcggcgtccacatctac 248
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 67.9 bits (34), Expect = 5e-08 Identities = 88/106 (83%) Strand = Plus / Minus Query: 277 ggagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctactt 336 ||||||||| | |||||| ||||||||| || |||| |||||||||||||| ||||||| Sbjct: 6339 ggagttcgggagcttccacaccagcggcctcgccatcatcgtccacgccgtcctctactt 6280 Query: 337 cgccctcatcgccatcctcatcctcgccgtcaacgtccacgtctac 382 ||| ||| || ||||| || || ||||| || ||||||| ||||| Sbjct: 6279 cgcactcctcaccatcttcctcatcgccatcggcgtccacatctac 6234
>gb|AY104142.1| Zea mays PCO087598 mRNA sequence Length = 630 Score = 65.9 bits (33), Expect = 2e-07 Identities = 87/105 (82%) Strand = Plus / Plus Query: 278 gagttcggcaacttccagaccagcggcatctccatactcgtccacgccgtcatctacttc 337 |||||||||| | | || ||||||||| | |||| ||||||||||||||| |||||||| Sbjct: 214 gagttcggcagcatgcacaccagcggcctggccatcctcgtccacgccgtcctctacttc 273 Query: 338 gccctcatcgccatcctcatcctcgccgtcaacgtccacgtctac 382 || |||||| ||||| || || ||||| || | ||||||||||| Sbjct: 274 gcgctcatcaccatcttcctcatcgccatcggcatccacgtctac 318
>emb|CT828252.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA001G23, full insert sequence Length = 585 Score = 63.9 bits (32), Expect = 8e-07 Identities = 164/208 (78%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 ||||||||||||||||||||| | | ||| ||||||| ||| | || |||||||||||| Sbjct: 141 atggcggactgggcgccggtggtggtgggggtggtgctgttcgtgctgctctcgccgggg 200 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| | || ||||||||| | | | || || ||||||| ||||| |||| | Sbjct: 201 ctgctggtggagctccccggcacgcaccgccacgtcgacttcggcagcttccgcaccaac 260 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 |||| |||| |||||||| || |||||| ||||||| | |||||||||||| |||| Sbjct: 261 ggcaaggccatcttcgtccacaccctcatcttcttcgccgccttcgccatcctcaccctc 320 Query: 362 gccgtcaacgtccacgtctacatcggct 389 ||| || || ||||| |||||| ||||| Sbjct: 321 gccctccacctccacatctacaccggct 348
>ref|NM_001053462.1| Oryza sativa (japonica cultivar-group) Os02g0509500 (Os02g0509500) mRNA, complete cds Length = 492 Score = 63.9 bits (32), Expect = 8e-07 Identities = 164/208 (78%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 ||||||||||||||||||||| | | ||| ||||||| ||| | || |||||||||||| Sbjct: 34 atggcggactgggcgccggtggtggtgggggtggtgctgttcgtgctgctctcgccgggg 93 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| | || ||||||||| | | | || || ||||||| ||||| |||| | Sbjct: 94 ctgctggtggagctccccggcacgcaccgccacgtcgacttcggcagcttccgcaccaac 153 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 |||| |||| |||||||| || |||||| ||||||| | |||||||||||| |||| Sbjct: 154 ggcaaggccatcttcgtccacaccctcatcttcttcgccgccttcgccatcctcaccctc 213 Query: 362 gccgtcaacgtccacgtctacatcggct 389 ||| || || ||||| |||||| ||||| Sbjct: 214 gccctccacctccacatctacaccggct 241
>dbj|AK105187.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-F09, full insert sequence Length = 492 Score = 63.9 bits (32), Expect = 8e-07 Identities = 164/208 (78%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcctcctctcgccgggg 241 ||||||||||||||||||||| | | ||| ||||||| ||| | || |||||||||||| Sbjct: 34 atggcggactgggcgccggtggtggtgggggtggtgctgttcgtgctgctctcgccgggg 93 Query: 242 ctgctgctccagatccccggcaagggcaggatggtggagttcggcaacttccagaccagc 301 |||||| | || ||||||||| | | | || || ||||||| ||||| |||| | Sbjct: 94 ctgctggtggagctccccggcacgcaccgccacgtcgacttcggcagcttccgcaccaac 153 Query: 302 ggcatctccatactcgtccacgccgtcatctacttcgccctcatcgccatcctcatcctc 361 |||| |||| |||||||| || |||||| ||||||| | |||||||||||| |||| Sbjct: 154 ggcaaggccatcttcgtccacaccctcatcttcttcgccgccttcgccatcctcaccctc 213 Query: 362 gccgtcaacgtccacgtctacatcggct 389 ||| || || ||||| |||||| ||||| Sbjct: 214 gccctccacctccacatctacaccggct 241
>gb|AY021987.1| Oryza sativa microsatellite MRG4312 containing (TC)X12, genomic sequence Length = 224 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcct 228 |||||||| |||| |||||||||||| ||||||||||| |||||||| Sbjct: 49 atggcggattgggggccggtgttcatagggctggtgctgttcatcct 3
>dbj|AK241851.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065215C20, full insert sequence Length = 542 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 296 accagcggcatctccatactcgtccacgccgtcatctacttc 337 ||||||||| ||||||| |||||||||||| || |||||||| Sbjct: 198 accagcggcctctccatcctcgtccacgccatcctctacttc 239
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 296 accagcggcatctccatactcgtccacgccgtcatctacttc 337 ||||||||| ||||||| |||||||||||| || |||||||| Sbjct: 11736136 accagcggcctctccatcctcgtccacgccatcctctacttc 11736177
>dbj|AP006344.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0680C01 Length = 145580 Score = 52.0 bits (26), Expect = 0.003 Identities = 38/42 (90%) Strand = Plus / Plus Query: 296 accagcggcatctccatactcgtccacgccgtcatctacttc 337 ||||||||| ||||||| |||||||||||| || |||||||| Sbjct: 94295 accagcggcctctccatcctcgtccacgccatcctctacttc 94336
>ref|XM_845813.1| PREDICTED: Canis familiaris similar to ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6, transcript variant 3 (LOC491324), mRNA Length = 1144 Score = 48.1 bits (24), Expect = 0.047 Identities = 27/28 (96%) Strand = Plus / Plus Query: 334 cttcgccctcatcgccatcctcatcctc 361 ||||||||||||| |||||||||||||| Sbjct: 260 cttcgccctcatcaccatcctcatcctc 287
>ref|XM_548445.2| PREDICTED: Canis familiaris similar to ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6, transcript variant 1 (LOC491324), mRNA Length = 1093 Score = 48.1 bits (24), Expect = 0.047 Identities = 27/28 (96%) Strand = Plus / Plus Query: 334 cttcgccctcatcgccatcctcatcctc 361 ||||||||||||| |||||||||||||| Sbjct: 223 cttcgccctcatcaccatcctcatcctc 250
>ref|XM_857490.1| PREDICTED: Canis familiaris similar to ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6, transcript variant 4 (LOC491324), mRNA Length = 1025 Score = 48.1 bits (24), Expect = 0.047 Identities = 27/28 (96%) Strand = Plus / Plus Query: 334 cttcgccctcatcgccatcctcatcctc 361 ||||||||||||| |||||||||||||| Sbjct: 240 cttcgccctcatcaccatcctcatcctc 267
>emb|AL663075.6| Mouse DNA sequence from clone RP23-430I21 on chromosome 11, complete sequence Length = 100983 Score = 48.1 bits (24), Expect = 0.047 Identities = 24/24 (100%) Strand = Plus / Plus Query: 688 tgtttaggaatctcatctttagag 711 |||||||||||||||||||||||| Sbjct: 1607 tgtttaggaatctcatctttagag 1630
>emb|AL596122.14| Mouse DNA sequence from clone RP23-320E6 on chromosome 11 Contains the Taf15 gene for TAF15 RNA polymerase II TATA box binding protein (TBP)-associated factor, two novel genes, the Ccl5, Ccl9, Ccl6, Ccl3 and Ccl4 genes for chemokine (C-C motif) ligand 5, 9, 6, 3 and 4, a ribosomal protein L9 (Rpl9) pseudogene, three extracellular proteinase inhibitor (Expi) pseudogene and an H+ transporting mitochondrial F1F0 complex ATP synthase subunit e (Atp5k) pseudogene,, complete sequence Length = 211873 Score = 48.1 bits (24), Expect = 0.047 Identities = 24/24 (100%) Strand = Plus / Plus Query: 688 tgtttaggaatctcatctttagag 711 |||||||||||||||||||||||| Sbjct: 211480 tgtttaggaatctcatctttagag 211503
>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome Length = 2178400 Score = 48.1 bits (24), Expect = 0.047 Identities = 27/28 (96%) Strand = Plus / Minus Query: 325 cgtcatctacttcgccctcatcgccatc 352 |||||||| ||||||||||||||||||| Sbjct: 1949041 cgtcatcttcttcgccctcatcgccatc 1949014
>gb|AC192564.2| Pan troglodytes BAC clone CH251-696G8 from chromosome 7, complete sequence Length = 165033 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Plus Query: 88 cacagagcaggtgaaggaaccagctgc 114 ||||||||||||||||| ||||||||| Sbjct: 52036 cacagagcaggtgaaggcaccagctgc 52062
>dbj|AK224630.1| Solanum lycopersicum cDNA, clone: FC03DC07, HTC in fruit Length = 389 Score = 46.1 bits (23), Expect = 0.18 Identities = 41/47 (87%) Strand = Plus / Plus Query: 182 atggcggactgggcgccggtgttcatcgggctggtgctcttcatcct 228 ||||||||||||| ||||||| ||||||| | || ||||||||||| Sbjct: 39 atggcggactgggggccggtgctcatcggagtagtactcttcatcct 85
>gb|AC007255.4| Homo sapiens BAC clone RP11-550A18 from 7, complete sequence Length = 157092 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Minus Query: 88 cacagagcaggtgaaggaaccagctgc 114 ||||||||||||||||| ||||||||| Sbjct: 148017 cacagagcaggtgaaggcaccagctgc 147991
>gb|AC146076.2| Pan troglodytes BAC clone RP43-15J5 from 7, complete sequence Length = 161297 Score = 46.1 bits (23), Expect = 0.18 Identities = 26/27 (96%) Strand = Plus / Minus Query: 88 cacagagcaggtgaaggaaccagctgc 114 ||||||||||||||||| ||||||||| Sbjct: 52416 cacagagcaggtgaaggcaccagctgc 52390
>gb|AC101956.5| Mus musculus chromosome 5, clone RP24-166L23, complete sequence Length = 183807 Score = 44.1 bits (22), Expect = 0.73 Identities = 22/22 (100%) Strand = Plus / Plus Query: 652 taaggctgtgtgcatcaataag 673 |||||||||||||||||||||| Sbjct: 149858 taaggctgtgtgcatcaataag 149879
>gb|AC132597.3| Mus musculus BAC clone RP24-180D17 from chromosome 5, complete sequence Length = 162871 Score = 44.1 bits (22), Expect = 0.73 Identities = 22/22 (100%) Strand = Plus / Minus Query: 652 taaggctgtgtgcatcaataag 673 |||||||||||||||||||||| Sbjct: 124635 taaggctgtgtgcatcaataag 124614
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 44.1 bits (22), Expect = 0.73 Identities = 22/22 (100%) Strand = Plus / Minus Query: 345 tcgccatcctcatcctcgccgt 366 |||||||||||||||||||||| Sbjct: 2762083 tcgccatcctcatcctcgccgt 2762062
>gb|DQ245945.1| Zea mays clone 93008 mRNA sequence Length = 747 Score = 42.1 bits (21), Expect = 2.9 Identities = 42/49 (85%) Strand = Plus / Plus Query: 215 gtgctcttcatcctcctctcgccggggctgctgctccagatccccggca 263 ||||||||| | |||||||||||||| ||||| || || ||||||||| Sbjct: 294 gtgctcttcgtgctcctctcgccgggcctgctcatcgagctccccggca 342
>ref|XM_001220736.1| Chaetomium globosum CBS 148.51 hypothetical protein (CHGG_01516) mRNA, complete cds Length = 2559 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 344 atcgccatcctcatcctcgcc 364 ||||||||||||||||||||| Sbjct: 981 atcgccatcctcatcctcgcc 961
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 334 cttcgccctcatcgccatcctcatc 358 |||| |||||||||||||||||||| Sbjct: 5207173 cttccccctcatcgccatcctcatc 5207197
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 2.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 347 gccatcctcatcctcgccgtcaacg 371 |||||||||| |||||||||||||| Sbjct: 382504 gccatcctcaacctcgccgtcaacg 382528
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 345 tcgccatcctcatcctcgccg 365 ||||||||||||||||||||| Sbjct: 2170886 tcgccatcctcatcctcgccg 2170906
>gb|AF527443.1| Phaseolus vulgaris clone PvDR-10 hypothetical protein mRNA, complete cds Length = 467 Score = 42.1 bits (21), Expect = 2.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 320 cacgccgtcatctacttcgccctcatcgccatc 352 ||||||||||||||||||| |||||| ||||| Sbjct: 172 cacgccgtcatctacttcggtctcatcaccatc 204
>gb|AC158900.4| Mus musculus chromosome 5, clone RP23-168G15, complete sequence Length = 211621 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 agcttcaacttttatgtacac 620 ||||||||||||||||||||| Sbjct: 110687 agcttcaacttttatgtacac 110707
>gb|AC105750.2| Homo sapiens chromosome 3 clone RP11-776K4, complete sequence Length = 166478 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 567 agttgatgatttcatatttta 587 ||||||||||||||||||||| Sbjct: 37564 agttgatgatttcatatttta 37544
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 tcgccatcctcatcctcgccg 365 ||||||||||||||||||||| Sbjct: 202475 tcgccatcctcatcctcgccg 202455
>gb|AC090003.1|CBRG45N09 Caenorhabditis briggsae cosmid G45N09, complete sequence Length = 47452 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 567 agttgatgatttcatatttta 587 ||||||||||||||||||||| Sbjct: 7950 agttgatgatttcatatttta 7970
>gb|DQ020483.1| Sus scrofa clone BAC KNP_1044G11, complete sequence Length = 134529 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 546 atgatgttcattgggcaattt 566 ||||||||||||||||||||| Sbjct: 41699 atgatgttcattgggcaattt 41719
>emb|BX465835.8| Mouse DNA sequence from clone RP23-42K18 on chromosome 4, complete sequence Length = 113482 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 596 gtatagcttcaacttttatgt 616 ||||||||||||||||||||| Sbjct: 81347 gtatagcttcaacttttatgt 81367
>gb|AC123994.11| Mus musculus chromosome 5, clone RP24-360P14, complete sequence Length = 148929 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 600 agcttcaacttttatgtacac 620 ||||||||||||||||||||| Sbjct: 42292 agcttcaacttttatgtacac 42312
>emb|AL732320.8| Mouse DNA sequence from clone RP23-140D16 on chromosome 2, complete sequence Length = 192010 Score = 42.1 bits (21), Expect = 2.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 702 atctttagagagaaaggatat 722 ||||||||||||||||||||| Sbjct: 58189 atctttagagagaaaggatat 58169 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 118,573,014 Number of extensions: 6479518 Number of successful extensions: 135657 Number of sequences better than 10.0: 70 Number of HSP's gapped: 135638 Number of HSP's successfully gapped: 85 Length of query: 765 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 743 Effective length of database: 18,508,616,841 Effective search space: 13751902312863 Effective search space used: 13751902312863 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
