ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf156g20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M21401.1|BLYCI1B Barley chymotrypsin inhibitor (CI-1B) mRNA, ... 880 0.0
2gb|M21400.1|BLYCI1A Barley chymotrypsin inhibitor (CI-1A) mRNA, ... 613 e-172
3gb|AC146535.3| Ornithorhynchus anatinus clone OA_Bb-124G17, comp... 46 0.11
4ref|XR_008906.1| PREDICTED: Rattus norvegicus similar to RIKEN c... 44 0.44
5ref|NM_001078067.1| Bos taurus similar to Ectoderm-neural cortex... 42 1.7
6ref|XM_682783.1| PREDICTED: Danio rerio similar to ectodermal-ne... 42 1.7
7ref|XM_682408.1| PREDICTED: Danio rerio similar to ectodermal-ne... 42 1.7
8emb|BX897665.7| Zebrafish DNA sequence from clone DKEY-27K7 in l... 42 1.7
9emb|BX571730.9| Zebrafish DNA sequence from clone DKEY-35I22 in ... 42 1.7
10emb|CR382299.29| Zebrafish DNA sequence from clone DKEY-9I13 in ... 40 6.8
11ref|XM_638861.1| Dictyostelium discoideum AX4 hypothetical prote... 40 6.8
12gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
13gb|AC150919.6| Bos taurus BAC CH240-303F16 (Children's Hospital... 40 6.8
14gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genom... 40 6.8
15ref|XM_541615.2| PREDICTED: Canis familiaris similar to Periaxin... 40 6.8
16dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 6.8
17gb|AC182428.2| Pan troglodytes BAC clone CH251-637G21 from chrom... 40 6.8
18gb|AC091877.2| Homo sapiens chromosome 5 clone CTD-3061E14, comp... 40 6.8
19dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.8
21emb|AL354707.17| Human DNA sequence from clone RP11-390F4 on chr... 40 6.8
22gb|AY257863.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.8
23gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041... 40 6.8
24gb|AC008939.8| Homo sapiens chromosome 5 clone CTD-2316B1, compl... 40 6.8
25emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chro... 40 6.8

>gb|M21401.1|BLYCI1B Barley chymotrypsin inhibitor (CI-1B) mRNA, complete cds
          Length = 452
 Score =  880 bits (444), Expect = 0.0
 Identities = 447/448 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   aacatcttcttacgcagagaggacatctaaataattcttcgggtgaatagttaattgaag 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5   aacatcttcttacgcagagaggacatctaaataattcttcgggtgaatagttaattgaag 64

                                                                       
Query: 62  aacatgcgttccatggagggaagtgtaccgaagtacccggagcctaccgaagggagcatc 121
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 65  aacatgcgttccatggagggaagtgtaccgaagtacccagagcctaccgaagggagcatc 124

                                                                       
Query: 122 ggagccagcggtgctaaaagatcatggccggaggtggtagggatgtccgcggagaaggcc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ggagccagcggtgctaaaagatcatggccggaggtggtagggatgtccgcggagaaggcc 184

                                                                       
Query: 182 aaagagatcattctccgggacaagcccgatgcccagatagaggtcatcccggtcgatgcg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 aaagagatcattctccgggacaagcccgatgcccagatagaggtcatcccggtcgatgcg 244

                                                                       
Query: 242 atggtccccctggacttcaatcccaaccgtatcttcattctcgttgccgtcgccaggacc 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atggtccccctggacttcaatcccaaccgtatcttcattctcgttgccgtcgccaggacc 304

                                                                       
Query: 302 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 364

                                                                       
Query: 362 taaagacatgcttagtatcagcatatcatggaataactttctgtatggtatacttatatt 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 taaagacatgcttagtatcagcatatcatggaataactttctgtatggtatacttatatt 424

                                       
Query: 422 atggaggaataaagacatgttgaacatc 449
           ||||||||||||||||||||||||||||
Sbjct: 425 atggaggaataaagacatgttgaacatc 452



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>gb|M21400.1|BLYCI1A Barley chymotrypsin inhibitor (CI-1A) mRNA, complete cds
          Length = 446

 Score =  613 bits (309), Expect = e-172
 Identities = 413/448 (92%), Gaps = 6/448 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   aacatcttcttacgcagagaggacatctaaataattcttcgggtgaatagttaattgaag 61
           |||||||||||||  || ||||||||||||| |||| ||| |      |||| |||||||
Sbjct: 5   aacatcttcttacatagcgaggacatctaaacaattattcag------agttcattgaag 58

                                                                       
Query: 62  aacatgcgttccatggagggaagtgtaccgaagtacccggagcctaccgaagggagcatc 121
           |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 59  aacatgagttccatggagggaagtgtactgaagtacccagagcctaccgaagggagcatc 118

                                                                       
Query: 122 ggagccagcggtgctaaaagatcatggccggaggtggtagggatgtccgcggagaaggcc 181
           || || ||| ||||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct: 119 ggggctagcagtgctaaaacatcatggccggaggtggtcgggatgtccgccgagaaggcc 178

                                                                       
Query: 182 aaagagatcattctccgggacaagcccgatgcccagatagaggtcatcccggtcgatgcg 241
           ||||||||||| || |||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 179 aaagagatcatccttcgggacaagcccaatgcccaggtagaggtcatcccggtcgatgcg 238

                                                                       
Query: 242 atggtccccctggacttcaatcccaaccgtatcttcattctcgttgccgtcgccaggacc 301
           ||||||| |||| ||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 239 atggtccacctgaacttcgatcccaaccgtgtcttcgttctcgttgccgtcgccaggacc 298

                                                                       
Query: 302 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 358

                                                                       
Query: 362 taaagacatgcttagtatcagcatatcatggaataactttctgtatggtatacttatatt 421
           |||||||||||  ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 359 taaagacatgccgagtatcagcatatcatgtaagaactttctgtatggtatacttatatt 418

                                       
Query: 422 atggaggaataaagacatgttgaacatc 449
           ||||||||||||||||||||||||||||
Sbjct: 419 atggaggaataaagacatgttgaacatc 446



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>gb|AC146535.3| Ornithorhynchus anatinus clone OA_Bb-124G17, complete sequence
          Length = 84548

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 212  gcccagatagaggtcatcccggt 234
            |||||||||||||||||||||||
Sbjct: 9217 gcccagatagaggtcatcccggt 9195



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>ref|XR_008906.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700112P19
           (predicted) (RGD1559811_predicted), mRNA
          Length = 995

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 244 ggtccccctggacttcaatcccaacc 269
           |||| |||||||||||||||||||||
Sbjct: 890 ggtcaccctggacttcaatcccaacc 865



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>ref|NM_001078067.1| Bos taurus similar to Ectoderm-neural cortex-1 protein (ENC-1)
            (p53-induced protein 10) (Nuclear matrix protein NRP/B)
            (MGC139340), mRNA
 gb|BC126494.1| Bos taurus similar to Ectoderm-neural cortex-1 protein (ENC-1)
            (p53-induced protein 10) (Nuclear matrix protein NRP/B),
            mRNA (cDNA clone MGC:139340 IMAGE:8210894), complete cds
          Length = 4497

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 174  agaaggccaaagagatcattc 194
            |||||||||||||||||||||
Sbjct: 996  agaaggccaaagagatcattc 1016



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>ref|XM_682783.1| PREDICTED: Danio rerio similar to ectodermal-neural cortex 1
           (LOC559445), mRNA
          Length = 1770

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 174 agaaggccaaagagatcattc 194
           |||||||||||||||||||||
Sbjct: 944 agaaggccaaagagatcattc 964



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>ref|XM_682408.1| PREDICTED: Danio rerio similar to ectodermal-neural cortex 1
           (LOC559101), mRNA
          Length = 1770

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 174 agaaggccaaagagatcattc 194
           |||||||||||||||||||||
Sbjct: 944 agaaggccaaagagatcattc 964



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>emb|BX897665.7| Zebrafish DNA sequence from clone DKEY-27K7 in linkage group 4, complete
              sequence
          Length = 129995

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 422    atggaggaataaagacatgtt 442
              |||||||||||||||||||||
Sbjct: 107129 atggaggaataaagacatgtt 107109



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>emb|BX571730.9| Zebrafish DNA sequence from clone DKEY-35I22 in linkage group 5,
             complete sequence
          Length = 160875

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 174   agaaggccaaagagatcattc 194
             |||||||||||||||||||||
Sbjct: 99642 agaaggccaaagagatcattc 99622



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>emb|CR382299.29| Zebrafish DNA sequence from clone DKEY-9I13 in linkage group 2, complete
              sequence
          Length = 129662

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 415    ttatattatggaggaataaagacatgtt 442
              |||||||| ||||||| |||||||||||
Sbjct: 119655 ttatattagggaggaaaaaagacatgtt 119682



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>ref|XM_638861.1| Dictyostelium discoideum AX4 hypothetical protein
           (DDBDRAFT_0217489) mRNA, complete cds
          Length = 2817

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 22  ggacatctaaataattcttc 41
           ||||||||||||||||||||
Sbjct: 818 ggacatctaaataattcttc 799



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>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0011J22 map R10571S, complete sequence
          Length = 154441

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   taaataactatgtaatggtg 358
             ||||||||||||||||||||
Sbjct: 63049 taaataactatgtaatggtg 63030



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>gb|AC150919.6| Bos taurus  BAC CH240-303F16 (Children's Hospital Oakland Research
            Institute Bovine BAC Library (male)) complete sequence
          Length = 160376

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 335  ataataaataactatgtaat 354
            ||||||||||||||||||||
Sbjct: 1379 ataataaataactatgtaat 1398



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>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete
             sequence
          Length = 139771

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   taaataactatgtaatggtg 358
             ||||||||||||||||||||
Sbjct: 21082 taaataactatgtaatggtg 21063



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>ref|XM_541615.2| PREDICTED: Canis familiaris similar to Periaxin (LOC484501), mRNA
          Length = 4410

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 113 gggagcatcggagccagcgg 132
           ||||||||||||||||||||
Sbjct: 86  gggagcatcggagccagcgg 105



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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 418     tattatggaggaataaagac 437
               ||||||||||||||||||||
Sbjct: 2260666 tattatggaggaataaagac 2260685



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>gb|AC182428.2| Pan troglodytes BAC clone CH251-637G21 from chromosome 4, complete
              sequence
          Length = 210098

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    taatggtgaaataaagacat 370
              ||||||||||||||||||||
Sbjct: 201381 taatggtgaaataaagacat 201400



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>gb|AC091877.2| Homo sapiens chromosome 5 clone CTD-3061E14, complete sequence
          Length = 147536

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   taatggtgaaataaagacat 370
             ||||||||||||||||||||
Sbjct: 26203 taatggtgaaataaagacat 26222



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 339     taaataactatgtaatggtg 358
               ||||||||||||||||||||
Sbjct: 3251936 taaataactatgtaatggtg 3251955



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 339      taaataactatgtaatggtg 358
                ||||||||||||||||||||
Sbjct: 21859763 taaataactatgtaatggtg 21859782



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>emb|AL354707.17| Human DNA sequence from clone RP11-390F4 on chromosome 9 Contains the
             5' end of a ring finger protein 2 (RNF2) pseudogene, the
             3' end of a novel gene, a 60S ribosomal protein L35a
             (RPL35A) pseudogene, three novel genes, a gene similar to
             small nuclear ribonucleoprotein polypeptide E (SNRPE), the
             5' end of the JMJD2C gene for jumonji domain containing
             2C, a chromosome 20 open reading frame 45 (C20orf45)
             pseudogene and six CpG islands, complete sequence
          Length = 170970

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 357   tgaaataaagacatgcttag 376
             ||||||||||||||||||||
Sbjct: 73939 tgaaataaagacatgcttag 73920



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>gb|AY257863.1| Oryza sativa (japonica cultivar-group) chromosome 11 genomic sequence
          Length = 42748

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 339  taaataactatgtaatggtg 358
            ||||||||||||||||||||
Sbjct: 6147 taaataactatgtaatggtg 6166



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>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4,
              complete sequence
          Length = 333321

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ggacatctaaataattcttc 41
              ||||||||||||||||||||
Sbjct: 130098 ggacatctaaataattcttc 130117



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>gb|AC008939.8| Homo sapiens chromosome 5 clone CTD-2316B1, complete sequence
          Length = 112755

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    taatggtgaaataaagacat 370
              ||||||||||||||||||||
Sbjct: 110726 taatggtgaaataaagacat 110745



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>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete
             sequence
          Length = 97756

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 353   atggtgaaataaagacatgcttag 376
             ||||||||||||||||||| ||||
Sbjct: 16516 atggtgaaataaagacatgtttag 16493


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 75,374,395
Number of extensions: 3906563
Number of successful extensions: 240646
Number of sequences better than 10.0: 25
Number of HSP's gapped: 240646
Number of HSP's successfully gapped: 26
Length of query: 468
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 446
Effective length of database: 18,508,616,841
Effective search space: 8254843111086
Effective search space used: 8254843111086
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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