| Clone Name | FLbaf156g20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M21401.1|BLYCI1B Barley chymotrypsin inhibitor (CI-1B) mRNA, complete cds Length = 452 Score = 880 bits (444), Expect = 0.0 Identities = 447/448 (99%) Strand = Plus / Plus Query: 2 aacatcttcttacgcagagaggacatctaaataattcttcgggtgaatagttaattgaag 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5 aacatcttcttacgcagagaggacatctaaataattcttcgggtgaatagttaattgaag 64 Query: 62 aacatgcgttccatggagggaagtgtaccgaagtacccggagcctaccgaagggagcatc 121 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 65 aacatgcgttccatggagggaagtgtaccgaagtacccagagcctaccgaagggagcatc 124 Query: 122 ggagccagcggtgctaaaagatcatggccggaggtggtagggatgtccgcggagaaggcc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 ggagccagcggtgctaaaagatcatggccggaggtggtagggatgtccgcggagaaggcc 184 Query: 182 aaagagatcattctccgggacaagcccgatgcccagatagaggtcatcccggtcgatgcg 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 aaagagatcattctccgggacaagcccgatgcccagatagaggtcatcccggtcgatgcg 244 Query: 242 atggtccccctggacttcaatcccaaccgtatcttcattctcgttgccgtcgccaggacc 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 atggtccccctggacttcaatcccaaccgtatcttcattctcgttgccgtcgccaggacc 304 Query: 302 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 364 Query: 362 taaagacatgcttagtatcagcatatcatggaataactttctgtatggtatacttatatt 421 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 taaagacatgcttagtatcagcatatcatggaataactttctgtatggtatacttatatt 424 Query: 422 atggaggaataaagacatgttgaacatc 449 |||||||||||||||||||||||||||| Sbjct: 425 atggaggaataaagacatgttgaacatc 452
>gb|M21400.1|BLYCI1A Barley chymotrypsin inhibitor (CI-1A) mRNA, complete cds Length = 446 Score = 613 bits (309), Expect = e-172 Identities = 413/448 (92%), Gaps = 6/448 (1%) Strand = Plus / Plus Query: 2 aacatcttcttacgcagagaggacatctaaataattcttcgggtgaatagttaattgaag 61 ||||||||||||| || ||||||||||||| |||| ||| | |||| ||||||| Sbjct: 5 aacatcttcttacatagcgaggacatctaaacaattattcag------agttcattgaag 58 Query: 62 aacatgcgttccatggagggaagtgtaccgaagtacccggagcctaccgaagggagcatc 121 |||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct: 59 aacatgagttccatggagggaagtgtactgaagtacccagagcctaccgaagggagcatc 118 Query: 122 ggagccagcggtgctaaaagatcatggccggaggtggtagggatgtccgcggagaaggcc 181 || || ||| ||||||||| |||||||||||||||||| ||||||||||| ||||||||| Sbjct: 119 ggggctagcagtgctaaaacatcatggccggaggtggtcgggatgtccgccgagaaggcc 178 Query: 182 aaagagatcattctccgggacaagcccgatgcccagatagaggtcatcccggtcgatgcg 241 ||||||||||| || |||||||||||| |||||||| ||||||||||||||||||||||| Sbjct: 179 aaagagatcatccttcgggacaagcccaatgcccaggtagaggtcatcccggtcgatgcg 238 Query: 242 atggtccccctggacttcaatcccaaccgtatcttcattctcgttgccgtcgccaggacc 301 ||||||| |||| ||||| ||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 239 atggtccacctgaacttcgatcccaaccgtgtcttcgttctcgttgccgtcgccaggacc 298 Query: 302 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 299 cctacggttggctaacaatattatcgtgcatggataataaataactatgtaatggtgaaa 358 Query: 362 taaagacatgcttagtatcagcatatcatggaataactttctgtatggtatacttatatt 421 ||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 359 taaagacatgccgagtatcagcatatcatgtaagaactttctgtatggtatacttatatt 418 Query: 422 atggaggaataaagacatgttgaacatc 449 |||||||||||||||||||||||||||| Sbjct: 419 atggaggaataaagacatgttgaacatc 446
>gb|AC146535.3| Ornithorhynchus anatinus clone OA_Bb-124G17, complete sequence Length = 84548 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 212 gcccagatagaggtcatcccggt 234 ||||||||||||||||||||||| Sbjct: 9217 gcccagatagaggtcatcccggt 9195
>ref|XR_008906.1| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 1700112P19 (predicted) (RGD1559811_predicted), mRNA Length = 995 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 244 ggtccccctggacttcaatcccaacc 269 |||| ||||||||||||||||||||| Sbjct: 890 ggtcaccctggacttcaatcccaacc 865
>ref|NM_001078067.1| Bos taurus similar to Ectoderm-neural cortex-1 protein (ENC-1) (p53-induced protein 10) (Nuclear matrix protein NRP/B) (MGC139340), mRNA gb|BC126494.1| Bos taurus similar to Ectoderm-neural cortex-1 protein (ENC-1) (p53-induced protein 10) (Nuclear matrix protein NRP/B), mRNA (cDNA clone MGC:139340 IMAGE:8210894), complete cds Length = 4497 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 agaaggccaaagagatcattc 194 ||||||||||||||||||||| Sbjct: 996 agaaggccaaagagatcattc 1016
>ref|XM_682783.1| PREDICTED: Danio rerio similar to ectodermal-neural cortex 1 (LOC559445), mRNA Length = 1770 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 agaaggccaaagagatcattc 194 ||||||||||||||||||||| Sbjct: 944 agaaggccaaagagatcattc 964
>ref|XM_682408.1| PREDICTED: Danio rerio similar to ectodermal-neural cortex 1 (LOC559101), mRNA Length = 1770 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 174 agaaggccaaagagatcattc 194 ||||||||||||||||||||| Sbjct: 944 agaaggccaaagagatcattc 964
>emb|BX897665.7| Zebrafish DNA sequence from clone DKEY-27K7 in linkage group 4, complete sequence Length = 129995 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 422 atggaggaataaagacatgtt 442 ||||||||||||||||||||| Sbjct: 107129 atggaggaataaagacatgtt 107109
>emb|BX571730.9| Zebrafish DNA sequence from clone DKEY-35I22 in linkage group 5, complete sequence Length = 160875 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 174 agaaggccaaagagatcattc 194 ||||||||||||||||||||| Sbjct: 99642 agaaggccaaagagatcattc 99622
>emb|CR382299.29| Zebrafish DNA sequence from clone DKEY-9I13 in linkage group 2, complete sequence Length = 129662 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 415 ttatattatggaggaataaagacatgtt 442 |||||||| ||||||| ||||||||||| Sbjct: 119655 ttatattagggaggaaaaaagacatgtt 119682
>ref|XM_638861.1| Dictyostelium discoideum AX4 hypothetical protein (DDBDRAFT_0217489) mRNA, complete cds Length = 2817 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 ggacatctaaataattcttc 41 |||||||||||||||||||| Sbjct: 818 ggacatctaaataattcttc 799
>gb|AC120527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence Length = 154441 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 taaataactatgtaatggtg 358 |||||||||||||||||||| Sbjct: 63049 taaataactatgtaatggtg 63030
>gb|AC150919.6| Bos taurus BAC CH240-303F16 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 160376 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ataataaataactatgtaat 354 |||||||||||||||||||| Sbjct: 1379 ataataaataactatgtaat 1398
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 taaataactatgtaatggtg 358 |||||||||||||||||||| Sbjct: 21082 taaataactatgtaatggtg 21063
>ref|XM_541615.2| PREDICTED: Canis familiaris similar to Periaxin (LOC484501), mRNA Length = 4410 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 gggagcatcggagccagcgg 132 |||||||||||||||||||| Sbjct: 86 gggagcatcggagccagcgg 105
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 418 tattatggaggaataaagac 437 |||||||||||||||||||| Sbjct: 2260666 tattatggaggaataaagac 2260685
>gb|AC182428.2| Pan troglodytes BAC clone CH251-637G21 from chromosome 4, complete sequence Length = 210098 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 taatggtgaaataaagacat 370 |||||||||||||||||||| Sbjct: 201381 taatggtgaaataaagacat 201400
>gb|AC091877.2| Homo sapiens chromosome 5 clone CTD-3061E14, complete sequence Length = 147536 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 taatggtgaaataaagacat 370 |||||||||||||||||||| Sbjct: 26203 taatggtgaaataaagacat 26222
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 taaataactatgtaatggtg 358 |||||||||||||||||||| Sbjct: 3251936 taaataactatgtaatggtg 3251955
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3 Length = 36192742 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 taaataactatgtaatggtg 358 |||||||||||||||||||| Sbjct: 21859763 taaataactatgtaatggtg 21859782
>emb|AL354707.17| Human DNA sequence from clone RP11-390F4 on chromosome 9 Contains the 5' end of a ring finger protein 2 (RNF2) pseudogene, the 3' end of a novel gene, a 60S ribosomal protein L35a (RPL35A) pseudogene, three novel genes, a gene similar to small nuclear ribonucleoprotein polypeptide E (SNRPE), the 5' end of the JMJD2C gene for jumonji domain containing 2C, a chromosome 20 open reading frame 45 (C20orf45) pseudogene and six CpG islands, complete sequence Length = 170970 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 tgaaataaagacatgcttag 376 |||||||||||||||||||| Sbjct: 73939 tgaaataaagacatgcttag 73920
>gb|AY257863.1| Oryza sativa (japonica cultivar-group) chromosome 11 genomic sequence Length = 42748 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 339 taaataactatgtaatggtg 358 |||||||||||||||||||| Sbjct: 6147 taaataactatgtaatggtg 6166
>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence Length = 333321 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 ggacatctaaataattcttc 41 |||||||||||||||||||| Sbjct: 130098 ggacatctaaataattcttc 130117
>gb|AC008939.8| Homo sapiens chromosome 5 clone CTD-2316B1, complete sequence Length = 112755 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 taatggtgaaataaagacat 370 |||||||||||||||||||| Sbjct: 110726 taatggtgaaataaagacat 110745
>emb|BX571779.6| Mouse DNA sequence from clone RP23-415G1 on chromosome X, complete sequence Length = 97756 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 353 atggtgaaataaagacatgcttag 376 ||||||||||||||||||| |||| Sbjct: 16516 atggtgaaataaagacatgtttag 16493 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 75,374,395 Number of extensions: 3906563 Number of successful extensions: 240646 Number of sequences better than 10.0: 25 Number of HSP's gapped: 240646 Number of HSP's successfully gapped: 26 Length of query: 468 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 446 Effective length of database: 18,508,616,841 Effective search space: 8254843111086 Effective search space used: 8254843111086 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 13 (26.3 bits)