>Q8BTI8:SRRM2_MOUSE Serine/arginine repetitive matrix protein 2 - Mus musculus (Mouse)|
          Length = 2703
 Score = 36.6 bits (83), Expect = 0.27
 Identities = 35/115 (30%), Positives = 48/115 (41%)
 Frame = -1

Query: 578  RGTPRIPSTQATAVRMRSVLMSSGDGEST*SLAISQAPSTHSRRKATLGLTTRSRLEERT 399
            RG  R P T     R R+   S    + + S A   +P+TH R ++   L +R R   RT
Sbjct: 1795 RGRSRTPLTSRKRSRSRT---SPAPWKRSRSRA---SPATHRRSRSITPLISRRRSRSRT 1848

Query: 398  EPLSRALKRPSEEPKRGKQ*CSPEMMDLLRNLAPATETRRAISEGERPRPVSSAT 234
             P+SR   R S   +R +   SP      R+  P    RR+ S     R   S T
Sbjct: 1849 SPVSRRRSR-SVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRSRSRT 1902

>Q9UQ35:SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 - Homo sapiens (Human)|
          Length = 2752

 Score = 35.8 bits (81), Expect = 0.46
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
 Frame = -1

Query: 578  RGTPRIPSTQATAVRMRSVLMSSGDGEST*SLAISQAPSTHSRRKATLGLTTRSRLEERT 399
            RG  R P T     R R+   S    + + S A   +P+TH R ++   L +R R   RT
Sbjct: 1839 RGRSRTPPTSRKRSRSRT---SPAPWKRSRSRA---SPATHRRSRSRTPLISRRRSRSRT 1892

Query: 398  EPLS--RALKRPSEEPKRGKQ*CSPEMMDLLRNLAPATETRRAIS 270
             P+S  R+  R S   +R +   SP      R+  P    RR+ S
Sbjct: 1893 SPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRSRS 1937

>P28798:GRN_MOUSE Granulins precursor - Mus musculus (Mouse)|
          Length = 589

 Score = 35.0 bits (79), Expect = 0.79
 Identities = 43/164 (26%), Positives = 55/164 (33%), Gaps = 27/164 (16%)
 Frame = +3

Query: 588 DVQTCPTCCCIPQRGQNHRQSRALEE------NIHVDG-CRGR-HCSF*GSEAADEVRGI 743
           D Q CP  CC+ Q G N+     L +      + H+DG C+   HC   G      V G 
Sbjct: 22  DGQFCPVACCLDQGGANYSCCNPLLDTWPRITSHHLDGSCQTHGHCPA-GYSCLLTVSGT 80

Query: 744 AAAQVRVPHI*GG-----LATGLHCSTAGNCLLQ----PRGPAQAP---------VLCCR 869
           ++       +  G        G HCS  G    Q    P G  Q P           CC 
Sbjct: 81  SSCCPFSKGVSCGDGYHCCPQGFHCSADGKSCFQMSDNPLGAVQCPGSQFECPDSATCCI 140

Query: 870 VSQGKWIAQAQPELQHCF**DRKGIQGEVH-MPS*GSCTTPRTR 998
           +  G W     P+   C        +  VH  P   SC    TR
Sbjct: 141 MVDGSWGCCPMPQASCC--------EDRVHCCPHGASCDLVHTR 176

>Q6ZNL6:FGD5_HUMAN FYVE, RhoGEF and PH domain-containing protein 5 - Homo sapiens|
           (Human)
          Length = 1462

 Score = 34.7 bits (78), Expect = 1.0
 Identities = 20/53 (37%), Positives = 30/53 (56%)
 Frame = -3

Query: 459 ALPQEGDIGLDHPLEVGGENGASLEGSKETLGGAEEGQAVVQPGDDGSIAEFG 301
           AL +EG+ G D  LE  GE  A   G+ E +  +EE + +VQP  + S+ + G
Sbjct: 130 ALSREGEEGTDLALEDEGEGCADEPGTLEQVSRSEEEEKLVQPHRECSLEDSG 182

>Q5WHG1:DNAK_BACSK Chaperone protein dnaK - Bacillus clausii (strain KSM-K16)|
          Length = 611

 Score = 33.1 bits (74), Expect = 3.0
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +1

Query: 163 EVAAVVAKDSQLLCAKVEKTLAPNVAELTGLGLSPSDIARLVSVAGA 303
           E+    AK  +L    VE+TL P    L+  GLS SDI ++V V G+
Sbjct: 266 ELTLTRAKFDELSADLVERTLGPTRRALSDAGLSASDIDKVVLVGGS 312

>Q62417:SRBS1_MOUSE Sorbin and SH3 domain-containing protein 1 - Mus musculus (Mouse)|
          Length = 1290

 Score = 32.7 bits (73), Expect = 3.9
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -1

Query: 698 MPTSASVHVNVFFKSSTLAVILSSLRNATACRACLN-IGDPRGTPRIPSTQATAVRMRSV 522
           M +S+SVH   F  S+ L       +  +A +AC++ I   +  PR+ +  A     +SV
Sbjct: 486 MISSSSVHSRTFHTSNALGPGCKHKKPLSAAKACISEILPSKFKPRLSAPSALLQEQKSV 545

Query: 521 LMSSGDGEST*SLAIS 474
           L+ S   +S  +L +S
Sbjct: 546 LLPSEKAQSCENLCVS 561

>Q04893:YM96_YEAST Uncharacterized protein YMR317W - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 1140

 Score = 32.0 bits (71), Expect = 6.7
 Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 2/164 (1%)
 Frame = -1

Query: 695 PTSASVHVNVFFKSSTLAVILSSLRNATACRACLNIGDPRGTPRIPSTQATAVRMRSVLM 516
           P S+++   + F S+ L++  S + +        ++     +    S  + A    S ++
Sbjct: 237 PASSTISETLPFSSTILSITSSPVSSEAPSATSSSVSSEASSSTSSSVSSEAPLATSSVV 296

Query: 515 SSGDGEST*SLAISQAPSTHSRRKATLGLTTRSRLEERTEPLSRALKRPSEEPKRGKQ*C 336
           SS    ST S+  S+APS+ S   ++   +T S       PL+ +    SE P       
Sbjct: 297 SSEAPSSTSSVVSSEAPSSTSSSVSSEISSTTSSSVSSEAPLATSSVVSSEAPSSTSSSV 356

Query: 335 SPEMMDLLRN--LAPATETRRAISEGERPRPVSSATLGARVFST 210
           S E+     +   + A     ++   E P   SS+       ST
Sbjct: 357 SSEISSTTSSSVSSEAPLATSSVVSSEAPSSTSSSVSSEAPSST 400

>Q8BKF1:RPOM_MOUSE DNA-directed RNA polymerase, mitochondrial precursor - Mus musculus|
           (Mouse)
          Length = 1207

 Score = 32.0 bits (71), Expect = 6.7
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +1

Query: 565 LGVPRGSPMFRHALHAVAFLSEDKITAKVELLKKTFTWTDAEVGIALSKAPKLLTRSEES 744
           +G+ +  P F H L   A  +    T +V +L     WT    G  L  + KL+  +E +
Sbjct: 589 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 648

Query: 745 LQHR 756
            QH+
Sbjct: 649 TQHQ 652

>Q14676:MDC1_HUMAN Mediator of DNA damage checkpoint protein 1 - Homo sapiens (Human)|
          Length = 2089

 Score = 31.6 bits (70), Expect = 8.7
 Identities = 35/124 (28%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
 Frame = -1

Query: 596  LNIGDPRGTPRIPSTQATAVRMRSVLMSSGDGEST*SLAISQAPSTHSRRKATLGLTTRS 417
            L I      P  P   +   R R+ + S  + EST  +A    PST + +  T       
Sbjct: 1332 LQISTSTDQPVTPKPTSRTTRSRTNMSSVKNPESTVPIAPELPPSTSTEQPVT------- 1384

Query: 416  RLEERTEPLSRALKRPSEEPKRGKQ*CSPE-MMDLLRNLAPATETRRAISEGERPRPVSS 240
                  EP SRA  R  +    GK   +PE ++     L P+T T + ++    P P S 
Sbjct: 1385 -----PEPTSRA-TRGRKNRSSGK---TPETLVPTAPKLEPSTSTDQPVT----PEPTSQ 1431

Query: 239  ATLG 228
            AT G
Sbjct: 1432 ATRG 1435

>Q4P0G6:CWC21_USTMA Pre-mRNA-splicing factor CWC21 - Ustilago maydis (Smut fungus)|
          Length = 348

 Score = 31.6 bits (70), Expect = 8.7
 Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
 Frame = -1

Query: 572 TPRIPSTQATAVRMRSVLMSSGDGEST*SLAISQAPSTHSRRKATLGLTTRSRLEERT-E 396
           +PR P+ + T+     V   S     + S + S++P +HSR   +    +RSR   R+  
Sbjct: 239 SPRSPTPRTTS----HVASYSSYSSRSRSRSRSRSPLSHSRSSRSRS-RSRSRSRSRSRS 293

Query: 395 PLSRALKRPSEEPKRGKQ*CSPEMMDLLRNLAPATETRRAISEGERP 255
           PLS +    S  P R +   SP      R+ +PA   RR  S    P
Sbjct: 294 PLSHSRSSRSRSPSRSR---SPSRCASSRSRSPAHRPRRHSSSRVNP 337


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 235,000,886
Number of extensions: 5035996
Number of successful extensions: 14786
Number of sequences better than 10.0: 10
Number of HSP's gapped: 14763
Number of HSP's successfully gapped: 10
Length of query: 482
Length of database: 100,686,439
Length adjustment: 117
Effective length of query: 365
Effective length of database: 68,593,924
Effective search space: 25036782260
Effective search space used: 25036782260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)