ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf153i07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|CT829987.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA012M02, full insert sequence Length = 780 Score = 333 bits (168), Expect = 6e-88 Identities = 297/340 (87%) Strand = Plus / Plus Query: 253 aggaggccatgaagctgctgttcgtcgagatgggcgtcggttacgaccagcacggacagg 312 |||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct: 306 aggaggccatgaggctgctgttcgtggagatgggcgtcgggtacgaccagcacgggcagg 365 Query: 313 acatcacctccgccgccgtgcgcgcctgcaaggatgccatctcctccaactccatccccg 372 || ||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||| | Sbjct: 366 acgtcaccgccgccgccgtgcgcgcctgcagggacgccatcacctccaactccatcccgg 425 Query: 373 ccttccgccgcgggtcgataccaggggtgaacagtgagcagatgaagctgcagatcaagc 432 |||||||| |||| || || || |||||||||| ||||||||||||||||||||||||| Sbjct: 426 ccttccgcagcggatccattcctggggtgaacacggagcagatgaagctgcagatcaagc 485 Query: 433 tgggtgtcccgaggccggtgcagcatctgttggactttgagagaatcaaggccgtcttcc 492 | || || |||||||| |||||| || ||||| |||||||| ||||||||||||||| Sbjct: 486 tcggggtgccgaggccaacgcagcacttgctggacgttgagagagtcaaggccgtcttcc 545 Query: 493 cctatggtgagatcactagctgtgaggtcgttgacggcgggatgatctgttcaagtggaa 552 |||||||| | || | |||| |||||| || ||||| |||||||||||||||||||| Sbjct: 546 cctatggtaaaattatcagctttgaggttgtggacggtgggatgatctgttcaagtggcg 605 Query: 553 catgcatcgaagcaatgggagataaaaacgatgactgcta 592 |||| | |||||||||||||||||||||||||| ||||| Sbjct: 606 tatgcctagaagcaatgggagataaaaacgatgattgcta 645
>dbj|AK240910.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065037D19, full insert sequence Length = 5183 Score = 333 bits (168), Expect = 6e-88 Identities = 297/340 (87%) Strand = Plus / Minus Query: 253 aggaggccatgaagctgctgttcgtcgagatgggcgtcggttacgaccagcacggacagg 312 |||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct: 3787 aggaggccatgaggctgctgttcgtggagatgggcgtcgggtacgaccagcacgggcagg 3728 Query: 313 acatcacctccgccgccgtgcgcgcctgcaaggatgccatctcctccaactccatccccg 372 || ||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||| | Sbjct: 3727 acgtcaccgccgccgccgtgcgcgcctgcagggacgccatcacctccaactccatcccgg 3668 Query: 373 ccttccgccgcgggtcgataccaggggtgaacagtgagcagatgaagctgcagatcaagc 432 |||||||| |||| || || || |||||||||| ||||||||||||||||||||||||| Sbjct: 3667 ccttccgcagcggatccattcctggggtgaacacggagcagatgaagctgcagatcaagc 3608 Query: 433 tgggtgtcccgaggccggtgcagcatctgttggactttgagagaatcaaggccgtcttcc 492 | || || |||||||| |||||| || ||||| |||||||| ||||||||||||||| Sbjct: 3607 tcggggtgccgaggccaacgcagcacttgctggacgttgagagagtcaaggccgtcttcc 3548 Query: 493 cctatggtgagatcactagctgtgaggtcgttgacggcgggatgatctgttcaagtggaa 552 |||||||| | || | |||| |||||| || ||||| |||||||||||||||||||| Sbjct: 3547 cctatggtaaaattatcagctttgaggttgtggacggtgggatgatctgttcaagtggcg 3488 Query: 553 catgcatcgaagcaatgggagataaaaacgatgactgcta 592 |||| | |||||||||||||||||||||||||| ||||| Sbjct: 3487 tatgcctagaagcaatgggagataaaaacgatgattgcta 3448
>ref|NM_001050096.1| Oryza sativa (japonica cultivar-group) Os01g0613300 (Os01g0613300) mRNA, complete cds Length = 754 Score = 333 bits (168), Expect = 6e-88 Identities = 297/340 (87%) Strand = Plus / Plus Query: 253 aggaggccatgaagctgctgttcgtcgagatgggcgtcggttacgaccagcacggacagg 312 |||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct: 254 aggaggccatgaggctgctgttcgtggagatgggcgtcgggtacgaccagcacgggcagg 313 Query: 313 acatcacctccgccgccgtgcgcgcctgcaaggatgccatctcctccaactccatccccg 372 || ||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||| | Sbjct: 314 acgtcaccgccgccgccgtgcgcgcctgcagggacgccatcacctccaactccatcccgg 373 Query: 373 ccttccgccgcgggtcgataccaggggtgaacagtgagcagatgaagctgcagatcaagc 432 |||||||| |||| || || || |||||||||| ||||||||||||||||||||||||| Sbjct: 374 ccttccgcagcggatccattcctggggtgaacacggagcagatgaagctgcagatcaagc 433 Query: 433 tgggtgtcccgaggccggtgcagcatctgttggactttgagagaatcaaggccgtcttcc 492 | || || |||||||| |||||| || ||||| |||||||| ||||||||||||||| Sbjct: 434 tcggggtgccgaggccaacgcagcacttgctggacgttgagagagtcaaggccgtcttcc 493 Query: 493 cctatggtgagatcactagctgtgaggtcgttgacggcgggatgatctgttcaagtggaa 552 |||||||| | || | |||| |||||| || ||||| |||||||||||||||||||| Sbjct: 494 cctatggtaaaattatcagctttgaggttgtggacggtgggatgatctgttcaagtggcg 553 Query: 553 catgcatcgaagcaatgggagataaaaacgatgactgcta 592 |||| | |||||||||||||||||||||||||| ||||| Sbjct: 554 tatgcctagaagcaatgggagataaaaacgatgattgcta 593
>dbj|AK062537.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-F05, full insert sequence Length = 754 Score = 333 bits (168), Expect = 6e-88 Identities = 297/340 (87%) Strand = Plus / Plus Query: 253 aggaggccatgaagctgctgttcgtcgagatgggcgtcggttacgaccagcacggacagg 312 |||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct: 254 aggaggccatgaggctgctgttcgtggagatgggcgtcgggtacgaccagcacgggcagg 313 Query: 313 acatcacctccgccgccgtgcgcgcctgcaaggatgccatctcctccaactccatccccg 372 || ||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||| | Sbjct: 314 acgtcaccgccgccgccgtgcgcgcctgcagggacgccatcacctccaactccatcccgg 373 Query: 373 ccttccgccgcgggtcgataccaggggtgaacagtgagcagatgaagctgcagatcaagc 432 |||||||| |||| || || || |||||||||| ||||||||||||||||||||||||| Sbjct: 374 ccttccgcagcggatccattcctggggtgaacacggagcagatgaagctgcagatcaagc 433 Query: 433 tgggtgtcccgaggccggtgcagcatctgttggactttgagagaatcaaggccgtcttcc 492 | || || |||||||| |||||| || ||||| |||||||| ||||||||||||||| Sbjct: 434 tcggggtgccgaggccaacgcagcacttgctggacgttgagagagtcaaggccgtcttcc 493 Query: 493 cctatggtgagatcactagctgtgaggtcgttgacggcgggatgatctgttcaagtggaa 552 |||||||| | || | |||| |||||| || ||||| |||||||||||||||||||| Sbjct: 494 cctatggtaaaattatcagctttgaggttgtggacggtgggatgatctgttcaagtggcg 553 Query: 553 catgcatcgaagcaatgggagataaaaacgatgactgcta 592 |||| | |||||||||||||||||||||||||| ||||| Sbjct: 554 tatgcctagaagcaatgggagataaaaacgatgattgcta 593
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 176 bits (89), Expect = 8e-41 Identities = 122/133 (91%) Strand = Plus / Plus Query: 253 aggaggccatgaagctgctgttcgtcgagatgggcgtcggttacgaccagcacggacagg 312 |||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct: 24337578 aggaggccatgaggctgctgttcgtggagatgggcgtcgggtacgaccagcacgggcagg 24337637 Query: 313 acatcacctccgccgccgtgcgcgcctgcaaggatgccatctcctccaactccatccccg 372 || ||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||| | Sbjct: 24337638 acgtcaccgccgccgccgtgcgcgcctgcagggacgccatcacctccaactccatcccgg 24337697 Query: 373 ccttccgccgcgg 385 |||||||| |||| Sbjct: 24337698 ccttccgcagcgg 24337710 Score = 97.6 bits (49), Expect = 6e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 396 ggggtgaacagtgagcagatgaagctgcagatcaagctgggtgtcccgaggccggtgcag 455 |||||||||| |||||||||||||||||||||||||| || || |||||||| |||| Sbjct: 24337853 ggggtgaacacggagcagatgaagctgcagatcaagctcggggtgccgaggccaacgcag 24337912 Query: 456 catctgttggactttgagagaatcaaggccgtcttccccta 496 || || ||||| |||||||| ||||||||||||||||||| Sbjct: 24337913 cacttgctggacgttgagagagtcaaggccgtcttccccta 24337953 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 510 agctgtgaggtcgttgacggcgggatgatctgttcaagtggaacatgcatcgaagcaatg 569 |||| |||||| || ||||| |||||||||||||||||||| |||| | ||||||||| Sbjct: 24339453 agctttgaggttgtggacggtgggatgatctgttcaagtggcgtatgcctagaagcaatg 24339512 Query: 570 ggagataaaaacgatgactgcta 592 ||||||||||||||||| ||||| Sbjct: 24339513 ggagataaaaacgatgattgcta 24339535
>dbj|AP002866.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0410E01 Length = 166753 Score = 176 bits (89), Expect = 8e-41 Identities = 122/133 (91%) Strand = Plus / Plus Query: 253 aggaggccatgaagctgctgttcgtcgagatgggcgtcggttacgaccagcacggacagg 312 |||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||| Sbjct: 83482 aggaggccatgaggctgctgttcgtggagatgggcgtcgggtacgaccagcacgggcagg 83541 Query: 313 acatcacctccgccgccgtgcgcgcctgcaaggatgccatctcctccaactccatccccg 372 || ||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||| | Sbjct: 83542 acgtcaccgccgccgccgtgcgcgcctgcagggacgccatcacctccaactccatcccgg 83601 Query: 373 ccttccgccgcgg 385 |||||||| |||| Sbjct: 83602 ccttccgcagcgg 83614 Score = 97.6 bits (49), Expect = 6e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 396 ggggtgaacagtgagcagatgaagctgcagatcaagctgggtgtcccgaggccggtgcag 455 |||||||||| |||||||||||||||||||||||||| || || |||||||| |||| Sbjct: 83757 ggggtgaacacggagcagatgaagctgcagatcaagctcggggtgccgaggccaacgcag 83816 Query: 456 catctgttggactttgagagaatcaaggccgtcttccccta 496 || || ||||| |||||||| ||||||||||||||||||| Sbjct: 83817 cacttgctggacgttgagagagtcaaggccgtcttccccta 83857 Score = 85.7 bits (43), Expect = 2e-13 Identities = 73/83 (87%) Strand = Plus / Plus Query: 510 agctgtgaggtcgttgacggcgggatgatctgttcaagtggaacatgcatcgaagcaatg 569 |||| |||||| || ||||| |||||||||||||||||||| |||| | ||||||||| Sbjct: 85357 agctttgaggttgtggacggtgggatgatctgttcaagtggcgtatgcctagaagcaatg 85416 Query: 570 ggagataaaaacgatgactgcta 592 ||||||||||||||||| ||||| Sbjct: 85417 ggagataaaaacgatgattgcta 85439
>ref|NM_179395.1| Arabidopsis thaliana unknown protein (AT1G29040) mRNA, complete cds Length = 779 Score = 50.1 bits (25), Expect = 0.012 Identities = 34/37 (91%) Strand = Plus / Plus Query: 271 tgttcgtcgagatgggcgtcggttacgaccagcacgg 307 ||||||| |||||||| ||||||||||| |||||||| Sbjct: 293 tgttcgttgagatgggtgtcggttacgatcagcacgg 329
>ref|NM_001036028.1| Arabidopsis thaliana unknown protein (AT1G29040) mRNA, complete cds Length = 823 Score = 50.1 bits (25), Expect = 0.012 Identities = 34/37 (91%) Strand = Plus / Plus Query: 271 tgttcgtcgagatgggcgtcggttacgaccagcacgg 307 ||||||| |||||||| ||||||||||| |||||||| Sbjct: 293 tgttcgttgagatgggtgtcggttacgatcagcacgg 329
>ref|NM_102645.4| Arabidopsis thaliana unknown protein (AT1G29040) mRNA, complete cds Length = 1592 Score = 50.1 bits (25), Expect = 0.012 Identities = 34/37 (91%) Strand = Plus / Plus Query: 271 tgttcgtcgagatgggcgtcggttacgaccagcacgg 307 ||||||| |||||||| ||||||||||| |||||||| Sbjct: 293 tgttcgttgagatgggtgtcggttacgatcagcacgg 329
>gb|AY150483.1| Arabidopsis thaliana unknown protein (At1g29040) mRNA, complete cds Length = 628 Score = 50.1 bits (25), Expect = 0.012 Identities = 34/37 (91%) Strand = Plus / Plus Query: 271 tgttcgtcgagatgggcgtcggttacgaccagcacgg 307 ||||||| |||||||| ||||||||||| |||||||| Sbjct: 242 tgttcgttgagatgggtgtcggttacgatcagcacgg 278
>gb|AF370279.1| Arabidopsis thaliana unknown protein (At1g29040) mRNA, partial cds Length = 787 Score = 50.1 bits (25), Expect = 0.012 Identities = 34/37 (91%) Strand = Plus / Plus Query: 271 tgttcgtcgagatgggcgtcggttacgaccagcacgg 307 ||||||| |||||||| ||||||||||| |||||||| Sbjct: 240 tgttcgttgagatgggtgtcggttacgatcagcacgg 276
>gb|AY085924.1| Arabidopsis thaliana clone 19718 mRNA, complete sequence Length = 824 Score = 50.1 bits (25), Expect = 0.012 Identities = 34/37 (91%) Strand = Plus / Plus Query: 271 tgttcgtcgagatgggcgtcggttacgaccagcacgg 307 ||||||| |||||||| ||||||||||| |||||||| Sbjct: 293 tgttcgttgagatgggtgtcggttacgatcagcacgg 329
>gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete sequence Length = 154716 Score = 50.1 bits (25), Expect = 0.012 Identities = 34/37 (91%) Strand = Plus / Minus Query: 271 tgttcgtcgagatgggcgtcggttacgaccagcacgg 307 ||||||| |||||||| ||||||||||| |||||||| Sbjct: 129029 tgttcgttgagatgggtgtcggttacgatcagcacgg 128993
>emb|BX815983.1|CNS0ABMO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH20ZE04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1543 Score = 50.1 bits (25), Expect = 0.012 Identities = 34/37 (91%) Strand = Plus / Plus Query: 271 tgttcgtcgagatgggcgtcggttacgaccagcacgg 307 ||||||| |||||||| ||||||||||| |||||||| Sbjct: 236 tgttcgttgagatgggtgtcggttacgatcagcacgg 272
>emb|BX817610.1|CNS0AB9U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL32ZE02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 727 Score = 50.1 bits (25), Expect = 0.012 Identities = 34/37 (91%) Strand = Plus / Plus Query: 271 tgttcgtcgagatgggcgtcggttacgaccagcacgg 307 ||||||| |||||||| ||||||||||| |||||||| Sbjct: 191 tgttcgttgagatgggtgtcggttacgatcagcacgg 227
>emb|BX817950.1|CNS0AB0H Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL52ZG09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 791 Score = 50.1 bits (25), Expect = 0.012 Identities = 34/37 (91%) Strand = Plus / Plus Query: 271 tgttcgtcgagatgggcgtcggttacgaccagcacgg 307 ||||||| |||||||| ||||||||||| |||||||| Sbjct: 256 tgttcgttgagatgggtgtcggttacgatcagcacgg 292
>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome Length = 9139763 Score = 44.1 bits (22), Expect = 0.76 Identities = 25/26 (96%) Strand = Plus / Minus Query: 317 cacctccgccgccgtgcgcgcctgca 342 |||| ||||||||||||||||||||| Sbjct: 596212 caccgccgccgccgtgcgcgcctgca 596187
>gb|AC026740.6| Homo sapiens chromosome 5 clone CTD-2589H19, complete sequence Length = 201464 Score = 44.1 bits (22), Expect = 0.76 Identities = 22/22 (100%) Strand = Plus / Minus Query: 684 cggaccgggagagggaaactgg 705 |||||||||||||||||||||| Sbjct: 64667 cggaccgggagagggaaactgg 64646
>gb|AC134832.5| Mus musculus BAC clone RP24-561D12 from chromosome 7, complete sequence Length = 158123 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 ggaggaggccatgaagctgct 271 ||||||||||||||||||||| Sbjct: 130062 ggaggaggccatgaagctgct 130082
>gb|AC040963.6| Homo sapiens chromosome 18, clone RP11-685A21, complete sequence Length = 146198 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 181 caggagccctcgcctcttctt 201 ||||||||||||||||||||| Sbjct: 81539 caggagccctcgcctcttctt 81559
>emb|AJ011500.1|SVI011500 Streptomyces violaceoruber Tu22 granaticin biosynthetic gene cluster Length = 39250 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 259 ccatgaagctgctgttcgtcg 279 ||||||||||||||||||||| Sbjct: 22247 ccatgaagctgctgttcgtcg 22227
>gb|AC093725.3| Homo sapiens BAC clone RP11-4O3 from 4, complete sequence Length = 163796 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 627 tgttagcctgaaggaattgtt 647 ||||||||||||||||||||| Sbjct: 80326 tgttagcctgaaggaattgtt 80346
>gb|AC157097.5| Mus musculus 6 BAC RP24-369M3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 206335 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 619 gttactaatgttagcctgaag 639 ||||||||||||||||||||| Sbjct: 4882 gttactaatgttagcctgaag 4902
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 tcacctccgccgccgtgcgcg 336 ||||||||||||||||||||| Sbjct: 37642 tcacctccgccgccgtgcgcg 37662
>gb|AC140676.3| Mus musculus BAC clone RP23-124A12 from 6, complete sequence Length = 197819 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 619 gttactaatgttagcctgaag 639 ||||||||||||||||||||| Sbjct: 13609 gttactaatgttagcctgaag 13589
>emb|AL603651.14| Mouse DNA sequence from clone RP23-398J2 on chromosome 7, complete sequence Length = 205942 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 251 ggaggaggccatgaagctgct 271 ||||||||||||||||||||| Sbjct: 98005 ggaggaggccatgaagctgct 98025
>gb|U20109.1|MMU20109 Mus musculus synaptotagmin VIII gene, partial cds Length = 3760 Score = 42.1 bits (21), Expect = 3.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 ggaggaggccatgaagctgct 271 ||||||||||||||||||||| Sbjct: 482 ggaggaggccatgaagctgct 462 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 131,798,949 Number of extensions: 7483376 Number of successful extensions: 159915 Number of sequences better than 10.0: 27 Number of HSP's gapped: 159915 Number of HSP's successfully gapped: 31 Length of query: 803 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 781 Effective length of database: 18,508,616,841 Effective search space: 14455229752821 Effective search space used: 14455229752821 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
