Clone Information

BLAST Search Result

Clone Name	FLbaf162k21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DQ244589.1\| Zea mays clone 9458 mRNA sequence	299	9e-78
2	emb\|CT832682.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	200	6e-48
3	emb\|CT832681.1\| Oryza sativa (indica cultivar-group) cDNA clone:...	200	6e-48
4	gb\|AY108840.1\| Zea mays PCO078891 mRNA sequence	153	1e-33
5	ref\|NM_001050424.1\| Oryza sativa (japonica cultivar-group) Os01g...	109	2e-20
6	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	109	2e-20
7	dbj\|AP003452.3\| Oryza sativa (japonica cultivar-group) genomic D...	109	2e-20
8	dbj\|AP003347.3\| Oryza sativa (japonica cultivar-group) genomic D...	109	2e-20
9	dbj\|AK069481.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	109	2e-20
10	ref\|NM_124331.2\| Arabidopsis thaliana unknown protein (AT5G49540...	52	0.003
11	gb\|AY129476.1\| Arabidopsis thaliana AT5g49540/K6M13_9 mRNA, comp...	52	0.003
12	gb\|AF361850.1\| Arabidopsis thaliana AT5g49540/K6M13_9 mRNA, comp...	52	0.003
13	gb\|AC137267.2\| Genomic sequence for Oryza sativa, Nipponbare str...	50	0.014
14	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	50	0.014
15	gb\|AC007511.8\|AC007511 Homo sapiens, clone RP11-84A1, complete s...	44	0.85
16	gb\|AY142940.1\| Heliobacillus mobilis DNA polymerase I gene, part...	44	0.85
17	ref\|XM_316920.2\| Anopheles gambiae str. PEST ENSANGP00000006560 ...	44	0.85
18	ref\|XM_722720.1\| Plasmodium yoelii yoelii str. 17XNL hypothetica...	44	0.85
19	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	42	3.3
20	ref\|XM_359685.1\| Magnaporthe grisea 70-15 hypothetical protein (...	42	3.3
21	gb\|CP000152.1\| Burkholderia sp. 383 chromosome 2, complete sequence	42	3.3
22	gb\|AC140724.4\| Mus musculus chromosome 8, clone RP24-291N1, comp...	42	3.3
23	gb\|AC139242.2\| Mus musculus BAC clone RP23-435I6 from chromosome...	42	3.3
24	gb\|AC134323.3\| Mus musculus BAC clone RP24-512P7 from chromosome...	42	3.3
25	gb\|AC161117.4\| Mus musculus BAC clone RP24-146I24 from chromosom...	42	3.3
26	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	42	3.3
27	dbj\|BA000011.4\| Thermoplasma volcanium GSS1 DNA, complete genome	42	3.3
28	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	42	3.3
29	dbj\|AK173812.1\| Ciona intestinalis cDNA, clone:ciad050h20, full ...	42	3.3
30	gb\|AF497482.1\| Micromonospora echinospora calicheamicin biosynth...	42	3.3
31	dbj\|AP004513.1\| Lotus japonicus genomic DNA, chromosome 5, clone...	42	3.3
32	gb\|AF315692.1\| Pleurotus pulmonarius strain Pl27 internal transc...	42	3.3

>gb|DQ244589.1| Zea mays clone 9458 mRNA sequence
          Length = 795
 Score =  299 bits (151), Expect = 9e-78
 Identities = 235/263 (89%)
 Strand = Plus / Plus

                                                                       
Query: 129 caggcggagaacctcaccagcaacgtcaggtccatcctctacagtcggacattcttgtcg 188
           ||||| |||||||||||||||||||||| |||| ||| ||||||||| ||||||||||||
Sbjct: 228 caggcagagaacctcaccagcaacgtcaagtccgtccactacagtcgaacattcttgtcg 287

                                                                       
Query: 189 atcatcagtggagttgttgctggcatctgggggttcacgggtctgacgggcttcgtcttc 248
           |||||  |||||||||||||||| |||||||| ||||| ||  ||||||| || ||||||
Sbjct: 288 atcattggtggagttgttgctggaatctggggattcacaggcttgacgggatttgtcttc 347

                                                                       
Query: 249 tactttctgataatgatggtagcatctcttgggctcttggcaaagtcaaagttctcagtc 308
           |||||||||||||||||||| |||||| | |||||||| |||||||||||||| ||||| 
Sbjct: 348 tactttctgataatgatggttgcatctatcgggctcttagcaaagtcaaagttttcagtg 407

                                                                       
Query: 309 cacacatacttcgatagttggagcaggattttagttgaaggagttttggccggccttatg 368
           || ||||||||||||||||||| |||||||| | ||||||||||||| |  |||||||||
Sbjct: 408 cagacatacttcgatagttggaccaggatttcaattgaaggagtttttggtggccttatg 467

                                  
Query: 369 tccttcgtgctgttctggacatt 391
           || ||||||||||||||||||||
Sbjct: 468 tcattcgtgctgttctggacatt 490

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>emb|CT832682.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA019L11, full
           insert sequence
          Length = 671

 Score =  200 bits (101), Expect = 6e-48
 Identities = 260/313 (83%)
 Strand = Plus / Plus

                                                                       
Query: 107 ctccgacgatgtccccgtcatccaggcggagaacctcaccagcaacgtcaggtccatcct 166
           ||||| ||| |||||| || ||||  ||||||||||||||||||||||||  ||||||  
Sbjct: 94  ctccgccgacgtccccatcctccactcggagaacctcaccagcaacgtcaaatccatcta 153

                                                                       
Query: 167 ctacagtcggacattcttgtcgatcatcagtggagttgttgctggcatctgggggttcac 226
           ||||||||||||||||||||| || ||||||||||||||||| || |||||||| |||||
Sbjct: 154 ctacagtcggacattcttgtcaattatcagtggagttgttgccggaatctggggattcac 213

                                                                       
Query: 227 gggtctgacgggcttcgtcttctactttctgataatgatggtagcatctcttgggctctt 286
            ||  ||| ||| ||||| |||||| ||||  |||||||||| ||||| |||||||| ||
Sbjct: 214 aggcttgatgggattcgtgttctaccttcttgtaatgatggtggcatcccttgggctttt 273

                                                                       
Query: 287 ggcaaagtcaaagttctcagtccacacatacttcgatagttggagcaggattttagttga 346
           |   ||| | || || ||| | || |||||||| || || |||| |||||||||  ||||
Sbjct: 274 gctgaaggccaaattttcaattcatacatactttgacagctggaacaggattttgattga 333

                                                                       
Query: 347 aggagttttggccggccttatgtccttcgtgctgttctggacattcgcgtacgatatcgt 406
           ||||||||| |  ||||||||||| || |||||||| |||||||| ||||| ||||| ||
Sbjct: 334 aggagtttttggtggccttatgtcttttgtgctgttttggacatttgcgtatgatattgt 393

                        
Query: 407 ccacatcttctga 419
            ||||||||||||
Sbjct: 394 gcacatcttctga 406

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>emb|CT832681.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA006D23, full
           insert sequence
          Length = 785

 Score =  200 bits (101), Expect = 6e-48
 Identities = 260/313 (83%)
 Strand = Plus / Plus

                                                                       
Query: 107 ctccgacgatgtccccgtcatccaggcggagaacctcaccagcaacgtcaggtccatcct 166
           ||||| ||| |||||| || ||||  ||||||||||||||||||||||||  ||||||  
Sbjct: 122 ctccgccgacgtccccatcctccactcggagaacctcaccagcaacgtcaaatccatcta 181

                                                                       
Query: 167 ctacagtcggacattcttgtcgatcatcagtggagttgttgctggcatctgggggttcac 226
           ||||||||||||||||||||| || ||||||||||||||||| || |||||||| |||||
Sbjct: 182 ctacagtcggacattcttgtcaattatcagtggagttgttgccggaatctggggattcac 241

                                                                       
Query: 227 gggtctgacgggcttcgtcttctactttctgataatgatggtagcatctcttgggctctt 286
            ||  ||| ||| ||||| |||||| ||||  |||||||||| ||||| |||||||| ||
Sbjct: 242 aggcttgatgggattcgtgttctaccttcttgtaatgatggtggcatcccttgggctttt 301

                                                                       
Query: 287 ggcaaagtcaaagttctcagtccacacatacttcgatagttggagcaggattttagttga 346
           |   ||| | || || ||| | || |||||||| || || |||| |||||||||  ||||
Sbjct: 302 gctgaaggccaaattttcaattcatacatactttgacagctggaacaggattttgattga 361

                                                                       
Query: 347 aggagttttggccggccttatgtccttcgtgctgttctggacattcgcgtacgatatcgt 406
           ||||||||| |  ||||||||||| || |||||||| |||||||| ||||| ||||| ||
Sbjct: 362 aggagtttttggtggccttatgtcttttgtgctgttttggacatttgcgtatgatattgt 421

                        
Query: 407 ccacatcttctga 419
            ||||||||||||
Sbjct: 422 gcacatcttctga 434

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>gb|AY108840.1| Zea mays PCO078891 mRNA sequence
          Length = 457

 Score =  153 bits (77), Expect = 1e-33
 Identities = 148/172 (86%)
 Strand = Plus / Plus

                                                                       
Query: 248 ctactttctgataatgatggtagcatctcttgggctcttggcaaagtcaaagttctcagt 307
           ||||||||||||||||||||| |||||| |||||||||| || ||||||||||| |||||
Sbjct: 1   ctactttctgataatgatggttgcatctattgggctcttagcgaagtcaaagttttcagt 60

                                                                       
Query: 308 ccacacatacttcgatagttggagcaggattttagttgaaggagttttggccggccttat 367
           | |  | |||||||||||||||| |||||||| | ||||||||||||| |  ||||| ||
Sbjct: 61  cnaggcgtacttcgatagttggaccaggatttcaattgaaggagtttttggtggcctgat 120

                                                               
Query: 368 gtccttcgtgctgttctggacattcgcgtacgatatcgtccacatcttctga 419
           ||| ||||||||||| |||||||| || || || || || ||||||||||||
Sbjct: 121 gtcattcgtgctgttttggacatttgcttatgacattgttcacatcttctga 172

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>ref|NM_001050424.1| Oryza sativa (japonica cultivar-group) Os01g0683600 (Os01g0683600)
           mRNA, partial cds
          Length = 2085

 Score =  109 bits (55), Expect = 2e-20
 Identities = 163/199 (81%)
 Strand = Plus / Plus

                                                                       
Query: 170 cagtcggacattcttgtcgatcatcagtggagttgttgctggcatctgggggttcacggg 229
           |||||||||||||||||| || ||||||||||||||||| || |||||||| ||||| ||
Sbjct: 740 cagtcggacattcttgtcaattatcagtggagttgttgccggaatctggggattcacagg 799

                                                                       
Query: 230 tctgacgggcttcgtcttctactttctgataatgatggtagcatctcttgggctcttggc 289
             ||| ||| ||||| |||||| ||||  |||||||||| ||||| |||||||| |||  
Sbjct: 800 cttgatgggattcgtgttctaccttcttgtaatgatggtggcatcccttgggcttttgct 859

                                                                       
Query: 290 aaagtcaaagttctcagtccacacatacttcgatagttggagcaggattttagttgaagg 349
            ||| | || || ||| | || |||||||| || || |||| |||||||||  |||||||
Sbjct: 860 gaaggccaaattttcaattcatacatactttgacagctggaacaggattttgattgaagg 919

                              
Query: 350 agttttggccggccttatg 368
           |||||| |  |||||||||
Sbjct: 920 agtttttggtggccttatg 938



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 107 ctccgacgatgtccccgtcatccaggcggagaacctcaccagcaacgtca 156
           ||||| ||| |||||| || ||||  ||||||||||||||||||||||||
Sbjct: 89  ctccgccgacgtccccatcctccactcggagaacctcaccagcaacgtca 138

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score =  109 bits (55), Expect = 2e-20
 Identities = 163/199 (81%)
 Strand = Plus / Plus

                                                                            
Query: 170      cagtcggacattcttgtcgatcatcagtggagttgttgctggcatctgggggttcacggg 229
                |||||||||||||||||| || ||||||||||||||||| || |||||||| ||||| ||
Sbjct: 28167860 cagtcggacattcttgtcaattatcagtggagttgttgccggaatctggggattcacagg 28167919

                                                                            
Query: 230      tctgacgggcttcgtcttctactttctgataatgatggtagcatctcttgggctcttggc 289
                  ||| ||| ||||| |||||| ||||  |||||||||| ||||| |||||||| |||  
Sbjct: 28167920 cttgatgggattcgtgttctaccttcttgtaatgatggtggcatcccttgggcttttgct 28167979

                                                                            
Query: 290      aaagtcaaagttctcagtccacacatacttcgatagttggagcaggattttagttgaagg 349
                 ||| | || || ||| | || |||||||| || || |||| |||||||||  |||||||
Sbjct: 28167980 gaaggccaaattttcaattcatacatactttgacagctggaacaggattttgattgaagg 28168039

                                   
Query: 350      agttttggccggccttatg 368
                |||||| |  |||||||||
Sbjct: 28168040 agtttttggtggccttatg 28168058



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 107      ctccgacgatgtccccgtcatccaggcggagaacctcaccagcaacgtca 156
                ||||| ||| |||||| || ||||  ||||||||||||||||||||||||
Sbjct: 28167209 ctccgccgacgtccccatcctccactcggagaacctcaccagcaacgtca 28167258

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>dbj|AP003452.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0478H03
          Length = 167560

 Score =  109 bits (55), Expect = 2e-20
 Identities = 163/199 (81%)
 Strand = Plus / Plus

                                                                        
Query: 170  cagtcggacattcttgtcgatcatcagtggagttgttgctggcatctgggggttcacggg 229
            |||||||||||||||||| || ||||||||||||||||| || |||||||| ||||| ||
Sbjct: 2367 cagtcggacattcttgtcaattatcagtggagttgttgccggaatctggggattcacagg 2426

                                                                        
Query: 230  tctgacgggcttcgtcttctactttctgataatgatggtagcatctcttgggctcttggc 289
              ||| ||| ||||| |||||| ||||  |||||||||| ||||| |||||||| |||  
Sbjct: 2427 cttgatgggattcgtgttctaccttcttgtaatgatggtggcatcccttgggcttttgct 2486

                                                                        
Query: 290  aaagtcaaagttctcagtccacacatacttcgatagttggagcaggattttagttgaagg 349
             ||| | || || ||| | || |||||||| || || |||| |||||||||  |||||||
Sbjct: 2487 gaaggccaaattttcaattcatacatactttgacagctggaacaggattttgattgaagg 2546

                               
Query: 350  agttttggccggccttatg 368
            |||||| |  |||||||||
Sbjct: 2547 agtttttggtggccttatg 2565



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                              
Query: 107  ctccgacgatgtccccgtcatccaggcggagaacctcaccagcaacgtca 156
            ||||| ||| |||||| || ||||  ||||||||||||||||||||||||
Sbjct: 1716 ctccgccgacgtccccatcctccactcggagaacctcaccagcaacgtca 1765

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>dbj|AP003347.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0445E10
          Length = 145912

 Score =  109 bits (55), Expect = 2e-20
 Identities = 163/199 (81%)
 Strand = Plus / Plus

                                                                         
Query: 170   cagtcggacattcttgtcgatcatcagtggagttgttgctggcatctgggggttcacggg 229
             |||||||||||||||||| || ||||||||||||||||| || |||||||| ||||| ||
Sbjct: 51854 cagtcggacattcttgtcaattatcagtggagttgttgccggaatctggggattcacagg 51913

                                                                         
Query: 230   tctgacgggcttcgtcttctactttctgataatgatggtagcatctcttgggctcttggc 289
               ||| ||| ||||| |||||| ||||  |||||||||| ||||| |||||||| |||  
Sbjct: 51914 cttgatgggattcgtgttctaccttcttgtaatgatggtggcatcccttgggcttttgct 51973

                                                                         
Query: 290   aaagtcaaagttctcagtccacacatacttcgatagttggagcaggattttagttgaagg 349
              ||| | || || ||| | || |||||||| || || |||| |||||||||  |||||||
Sbjct: 51974 gaaggccaaattttcaattcatacatactttgacagctggaacaggattttgattgaagg 52033

                                
Query: 350   agttttggccggccttatg 368
             |||||| |  |||||||||
Sbjct: 52034 agtttttggtggccttatg 52052



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 107   ctccgacgatgtccccgtcatccaggcggagaacctcaccagcaacgtca 156
             ||||| ||| |||||| || ||||  ||||||||||||||||||||||||
Sbjct: 51203 ctccgccgacgtccccatcctccactcggagaacctcaccagcaacgtca 51252

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>dbj|AK069481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020K18, full
           insert sequence
          Length = 2086

 Score =  109 bits (55), Expect = 2e-20
 Identities = 163/199 (81%)
 Strand = Plus / Plus

                                                                       
Query: 170 cagtcggacattcttgtcgatcatcagtggagttgttgctggcatctgggggttcacggg 229
           |||||||||||||||||| || ||||||||||||||||| || |||||||| ||||| ||
Sbjct: 741 cagtcggacattcttgtcaattatcagtggagttgttgccggaatctggggattcacagg 800

                                                                       
Query: 230 tctgacgggcttcgtcttctactttctgataatgatggtagcatctcttgggctcttggc 289
             ||| ||| ||||| |||||| ||||  |||||||||| ||||| |||||||| |||  
Sbjct: 801 cttgatgggattcgtgttctaccttcttgtaatgatggtggcatcccttgggcttttgct 860

                                                                       
Query: 290 aaagtcaaagttctcagtccacacatacttcgatagttggagcaggattttagttgaagg 349
            ||| | || || ||| | || |||||||| || || |||| |||||||||  |||||||
Sbjct: 861 gaaggccaaattttcaattcatacatactttgacagctggaacaggattttgattgaagg 920

                              
Query: 350 agttttggccggccttatg 368
           |||||| |  |||||||||
Sbjct: 921 agtttttggtggccttatg 939



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 107 ctccgacgatgtccccgtcatccaggcggagaacctcaccagcaacgtca 156
           ||||| ||| |||||| || ||||  ||||||||||||||||||||||||
Sbjct: 90  ctccgccgacgtccccatcctccactcggagaacctcaccagcaacgtca 139

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>ref|NM_124331.2| Arabidopsis thaliana unknown protein (AT5G49540) mRNA, complete cds
          Length = 705

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 360 ggccttatgtccttcgtgctgttctggacattcgcgta 397
           ||||||||||| || ||||||||||||||||| |||||
Sbjct: 426 ggccttatgtcgtttgtgctgttctggacatttgcgta 463

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>gb|AY129476.1| Arabidopsis thaliana AT5g49540/K6M13_9 mRNA, complete cds
          Length = 345

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 360 ggccttatgtccttcgtgctgttctggacattcgcgta 397
           ||||||||||| || ||||||||||||||||| |||||
Sbjct: 286 ggccttatgtcgtttgtgctgttctggacatttgcgta 323

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>gb|AF361850.1| Arabidopsis thaliana AT5g49540/K6M13_9 mRNA, complete cds
          Length = 639

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 360 ggccttatgtccttcgtgctgttctggacattcgcgta 397
           ||||||||||| || ||||||||||||||||| |||||
Sbjct: 360 ggccttatgtcgtttgtgctgttctggacatttgcgta 397

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>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0032G21, from chromosome 3, complete sequence
          Length = 187621

 Score = 50.1 bits (25), Expect = 0.014
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                       
Query: 170    cagtcggacattcttgtcgatcatcagtggagttgttgctggcatctgggggttcac 226
              ||||||||||||| |||| ||||||| ||||||||| || || |||| ||| |||||
Sbjct: 135611 cagtcggacattcgtgtcaatcatcaatggagttgtcgccggaatctagggattcac 135667

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.014
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 170      cagtcggacattcttgtcgatcatcagtggagttgttgctggcatctgggggttcac 226
                ||||||||||||| |||| ||||||| ||||||||| || || |||| ||| |||||
Sbjct: 10716798 cagtcggacattcgtgtcaatcatcaatggagttgtcgccggaatctagggattcac 10716854

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>gb|AC007511.8|AC007511 Homo sapiens, clone RP11-84A1, complete sequence
          Length = 168822

 Score = 44.1 bits (22), Expect = 0.85
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 546   ctttattatccatttttgttgt 567
             ||||||||||||||||||||||
Sbjct: 80410 ctttattatccatttttgttgt 80389

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>gb|AY142940.1| Heliobacillus mobilis DNA polymerase I gene, partial cds
          Length = 2796

 Score = 44.1 bits (22), Expect = 0.85
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 239  cttcgtcttctactttctgata 260
            ||||||||||||||||||||||
Sbjct: 1054 cttcgtcttctactttctgata 1033

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>ref|XM_316920.2| Anopheles gambiae str. PEST ENSANGP00000006560
           (ENSANGG00000004967), partial mRNA
          Length = 1772

 Score = 44.1 bits (22), Expect = 0.85
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 81  gcgatggcggcggccggcggca 102
           ||||||||||||||||||||||
Sbjct: 736 gcgatggcggcggccggcggca 757

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>ref|XM_722720.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07033)
            partial mRNA
          Length = 3183

 Score = 44.1 bits (22), Expect = 0.85
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 840  ttctatatacaatttgtataat 861
            ||||||||||||||||||||||
Sbjct: 1575 ttctatatacaatttgtataat 1554

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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 77      cgcggcgatggcggcggccggcggc 101
               |||||||||||||||||||| ||||
Sbjct: 1760789 cgcggcgatggcggcggccgacggc 1760765

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>ref|XM_359685.1| Magnaporthe grisea 70-15 hypothetical protein (MG05092.4) partial
           mRNA
          Length = 1110

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 12  gccgtccagatcgctgccgtc 32
           |||||||||||||||||||||
Sbjct: 454 gccgtccagatcgctgccgtc 474

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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 75      ttcgcggcgatggcggcggccggcg 99
               ||||||||||| |||||||||||||
Sbjct: 1230118 ttcgcggcgatcgcggcggccggcg 1230142

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>gb|AC140724.4| Mus musculus chromosome 8, clone RP24-291N1, complete sequence
          Length = 159182

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 574   cttttactgtctagtttggtgaact 598
             |||| ||||||||||||||||||||
Sbjct: 95009 ctttaactgtctagtttggtgaact 95033

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>gb|AC139242.2| Mus musculus BAC clone RP23-435I6 from chromosome 13, complete sequence
          Length = 189431

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 420   gttctgatggaaggagagtctgatg 444
             ||||||||||| |||||||||||||
Sbjct: 53919 gttctgatggagggagagtctgatg 53943

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>gb|AC134323.3| Mus musculus BAC clone RP24-512P7 from chromosome 8, complete sequence
          Length = 176667

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 574    cttttactgtctagtttggtgaact 598
              |||| ||||||||||||||||||||
Sbjct: 135485 ctttaactgtctagtttggtgaact 135461

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>gb|AC161117.4| Mus musculus BAC clone RP24-146I24 from chromosome 13, complete
             sequence
          Length = 195710

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 420   gttctgatggaaggagagtctgatg 444
             ||||||||||| |||||||||||||
Sbjct: 79227 gttctgatggagggagagtctgatg 79203

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 76      tcgcggcgatggcggcggccg 96
               |||||||||||||||||||||
Sbjct: 5191207 tcgcggcgatggcggcggccg 5191187

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>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 841    tctatatacaatttgtataat 861
              |||||||||||||||||||||
Sbjct: 708529 tctatatacaatttgtataat 708549

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 79      cggcgatggcggcggccggcg 99
               |||||||||||||||||||||
Sbjct: 3463051 cggcgatggcggcggccggcg 3463031

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>dbj|AK173812.1| Ciona intestinalis cDNA, clone:ciad050h20, full insert sequence
          Length = 1418

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 817  tttgtagaattcgttttactt 837
            |||||||||||||||||||||
Sbjct: 1276 tttgtagaattcgttttactt 1256

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>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete
            sequence
          Length = 90348

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 78   gcggcgatggcggcggccggc 98
            |||||||||||||||||||||
Sbjct: 2255 gcggcgatggcggcggccggc 2275

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>dbj|AP004513.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT01O22, TM0043a,
             complete sequence
          Length = 54726

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 80    ggcgatggcggcggccggcgg 100
             |||||||||||||||||||||
Sbjct: 20260 ggcgatggcggcggccggcgg 20280

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>gb|AF315692.1| Pleurotus pulmonarius strain Pl27 internal transcribed spacer 1,
           complete sequence
          Length = 231

 Score = 42.1 bits (21), Expect = 3.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 193 tcagtggagttgttgctggcatctggggg 221
           |||||||||||||||||||| ||| ||||
Sbjct: 9   tcagtggagttgttgctggcctctagggg 37


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 157,166,119
Number of extensions: 8474118
Number of successful extensions: 187584
Number of sequences better than 10.0: 32
Number of HSP's gapped: 187584
Number of HSP's successfully gapped: 44
Length of query: 887
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 865
Effective length of database: 18,508,616,841
Effective search space: 16009953567465
Effective search space used: 16009953567465
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result