Clone Information

BLAST Search Result

Clone Name	FLbaf153f18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	AK108482:Os02g0747500	192	2e-58
2	AK102752:Os06g0226600	154	2e-46
3	AK061806:Os06g0226600	154	2e-46
4	AK103473:Os11g0602300	115	3e-34
5	AK071051:Os11g0498600	47	1e-06
6	Os09g0450600:Os09g0450600	50	2e-06
7	AK100937:Os08g0467500	45	7e-05
8	AK064041:Os08g0467500	44	2e-04
9	AK121849:Os10g0177400	40	0.002
10	AK064459:Os10g0177400	40	0.002
11	AK068940:Os03g0250200	39	0.004
12	AK058393:Os03g0250200	39	0.004
13	AK065483:Os03g0132300	37	0.020
14	Os07g0568400:Os07g0568400	36	0.034
15	Os12g0158600:Os12g0158600	33	0.29
16	Os08g0205000:Os08g0205000	33	0.29
17	AK103521:Os12g0633600	33	0.37
18	AB118011:Os11g0602300	30	1.9
19	AK069715:Os02g0719100	30	3.1
20	AK108378:Os04g0415200	29	4.1
21	AK103691:Os03g0673800	29	5.4
22	Os02g0109100:Os02g0109100	28	9.2
23	D26537:Os07g0687900	28	9.2
24	AK120485:Os11g0629300	28	9.2
25	AK107065:Os07g0687900	28	9.2
26	AK100055:Os06g0690700	28	9.2
27	AK099548:Os07g0687900	28	9.2

>AK108482:Os02g0747500 |
          Length = 192
 Score =  192 bits (487), Expect(2) = 2e-58
 Identities = 90/138 (65%), Positives = 105/138 (76%), Gaps = 1/138 (0%)
 Frame = +1

Query: 217 LLFSLLKTLIDTFA-VIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQVV 393
           +L+S +     TF+ V+EWLP WSY KLFFNCWLVLPYFNGAAHVYEHFVRPM+VNQQ+V
Sbjct: 53  VLYSFITLFELTFSPVLEWLPLWSYAKLFFNCWLVLPYFNGAAHVYEHFVRPMVVNQQIV 112

Query: 394 NIWYIPKKENSDKPDDVISAAQKYIEQNGSKAFETLVNKFKTTNARRSIXXXXXXXXXXX 573
           NIWYIP+K+ SD+PDDVISAAQ+YIEQNGS+AFE+LVNKFK +N RRSI           
Sbjct: 113 NIWYIPRKDESDRPDDVISAAQRYIEQNGSRAFESLVNKFKASNTRRSILEEVEAERRAK 172

Query: 574 XXXXXXXXDVNPFFHPNY 627
                   D NPFF+ NY
Sbjct: 173 AELEAEARDENPFFNQNY 190



 Score = 52.4 bits (124), Expect(2) = 2e-58
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +2

Query: 74  GSGSFLKVLVSNLDVLAGPIVSLAYPL*VNV 166
           GSGSFLKV+V NLDVLAGPIVSLAYPL  +V
Sbjct: 4   GSGSFLKVVVKNLDVLAGPIVSLAYPLYASV 34

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>AK102752:Os06g0226600 |
          Length = 193

 Score =  154 bits (388), Expect(2) = 2e-46
 Identities = 68/99 (68%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
 Frame = +1

Query: 217 LLFSLLKTLIDTFA-VIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQVV 393
           +L+S +     TFA VIEWLPFWSY KLFFNCWLVLP F+GAA+VY+HFVRPM VN+Q+V
Sbjct: 51  VLYSFITLFELTFAPVIEWLPFWSYAKLFFNCWLVLPCFHGAAYVYDHFVRPMFVNRQIV 110

Query: 394 NIWYIPKKENSDKPDDVISAAQKYIEQNGSKAFETLVNK 510
           N+WY+P+KEN  KPDDV+SAA++YIEQNG +AFE L++K
Sbjct: 111 NVWYVPRKENLSKPDDVLSAAERYIEQNGPEAFEKLISK 149



 Score = 50.8 bits (120), Expect(2) = 2e-46
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = +2

Query: 71  MGSGSFLKVLVSNLDVLAGPIVSLAYPL*VNV 166
           MGSGSFLK+L +N DVLAGP+VSLAYPL  +V
Sbjct: 1   MGSGSFLKLLANNFDVLAGPLVSLAYPLYASV 32

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>AK061806:Os06g0226600 |
          Length = 193

 Score =  154 bits (388), Expect(2) = 2e-46
 Identities = 68/99 (68%), Positives = 85/99 (85%), Gaps = 1/99 (1%)
 Frame = +1

Query: 217 LLFSLLKTLIDTFA-VIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQVV 393
           +L+S +     TFA VIEWLPFWSY KLFFNCWLVLP F+GAA+VY+HFVRPM VN+Q+V
Sbjct: 51  VLYSFITLFELTFAPVIEWLPFWSYAKLFFNCWLVLPCFHGAAYVYDHFVRPMFVNRQIV 110

Query: 394 NIWYIPKKENSDKPDDVISAAQKYIEQNGSKAFETLVNK 510
           N+WY+P+KEN  KPDDV+SAA++YIEQNG +AFE L++K
Sbjct: 111 NVWYVPRKENLSKPDDVLSAAERYIEQNGPEAFEKLISK 149



 Score = 50.8 bits (120), Expect(2) = 2e-46
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = +2

Query: 71  MGSGSFLKVLVSNLDVLAGPIVSLAYPL*VNV 166
           MGSGSFLK+L +N DVLAGP+VSLAYPL  +V
Sbjct: 1   MGSGSFLKLLANNFDVLAGPLVSLAYPLYASV 32

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>AK103473:Os11g0602300 |
          Length = 314

 Score =  115 bits (288), Expect(2) = 3e-34
 Identities = 54/100 (54%), Positives = 73/100 (73%), Gaps = 2/100 (2%)
 Frame = +1

Query: 217 LLFSLLKTLIDTFA-VIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQVV 393
           +++SL+     TFA +I+WLPFW   KL F CWLVLPYFNGAA VY+++VRPM V  Q+V
Sbjct: 51  VMYSLITLFELTFASIIQWLPFWPSMKLIFICWLVLPYFNGAAFVYQNYVRPMFVKHQMV 110

Query: 394 NIWYIPKKEN-SDKPDDVISAAQKYIEQNGSKAFETLVNK 510
           NIWY+P+K+    K DD ++A  K+IE+NG +A + L NK
Sbjct: 111 NIWYVPQKKGLFGKSDDFLTALDKFIEENGPEALKKLTNK 150



 Score = 48.1 bits (113), Expect(2) = 3e-34
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +2

Query: 71  MGSGSFLKVLVSNLDVLAGPIVSLAYPL*VNV 166
           MGSGS LKVL  N DVLAGP+V+LAYPL  +V
Sbjct: 1   MGSGSLLKVLAKNFDVLAGPLVALAYPLYASV 32

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>AK071051:Os11g0498600 |
          Length = 152

 Score = 47.4 bits (111), Expect(2) = 1e-06
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
 Frame = +1

Query: 217 LLFSLLKTLIDTF--AVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 375
           +L+S + TL++    ++I W+P W   KL F  WL LP F GAA +Y  FVR  +
Sbjct: 48  ILYSFI-TLVEMLLESLIYWIPIWYELKLLFIAWLALPNFRGAAFIYNRFVREQL 101



 Score = 23.5 bits (49), Expect(2) = 1e-06
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 89  LKVLVSNLDVLAGPIVSLAYPL*VNV 166
           L  +++++  LAGP V L YPL  +V
Sbjct: 4   LWTILTHVHSLAGPTVMLLYPLYASV 29

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>Os09g0450600:Os09g0450600 |
          Length = 481

 Score = 50.1 bits (118), Expect = 2e-06
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +1

Query: 217 LLFSLLKTL-IDTFAVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQV 390
           +L+SL+  + +    V+ W+P W   K+ F  WLVLP F GA+ +Y+ FVR  +   +V
Sbjct: 17  ILYSLITLMEMALHKVLYWIPLWYEAKVLFVAWLVLPQFRGASFIYDKFVREQLKKNRV 75

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>AK100937:Os08g0467500 |
          Length = 113

 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
 Frame = +1

Query: 217 LLFSLLKTLIDTFA--VIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 375
           +L+S + TL++  A  V+ W+P W   K+ F  WLVLP F GA+ +Y+  VR  +
Sbjct: 28  ILYSFI-TLLEMVAEPVLYWIPVWYPVKVLFVAWLVLPQFKGASFIYKKLVREQL 81

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>AK064041:Os08g0467500 |
          Length = 88

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +1

Query: 238 TLIDTFA--VIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 375
           TL++  A  V+ W+P W   K+ F  WLVLP F GA+ +Y+  VR  +
Sbjct: 9   TLLEMVAEPVLYWIPVWYPVKVLFVAWLVLPQFKGASFIYKKLVREQL 56

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>AK121849:Os10g0177400 |
          Length = 348

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 232 LKTLIDTFA--VIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 375
           L T+++ F    I WLP +S  KL F  +L  P   G ++VYE F RP I
Sbjct: 49  LLTVLERFGDFAISWLPLYSEAKLMFFIYLWCPRTKGTSYVYETFFRPYI 98

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>AK064459:Os10g0177400 |
          Length = 233

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 232 LKTLIDTFA--VIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 375
           L T+++ F    I WLP +S  KL F  +L  P   G ++VYE F RP I
Sbjct: 49  LLTVLERFGDFAISWLPLYSEAKLMFFIYLWCPRTKGTSYVYETFFRPYI 98

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>AK068940:Os03g0250200 |
          Length = 250

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 232 LKTLIDTFA--VIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 375
           L T+++ F    I WLPF+S  KL F  +L  P   G  ++Y  F RP I
Sbjct: 49  LMTVMERFGDFTISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYI 98

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>AK058393:Os03g0250200 |
          Length = 380

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 232 LKTLIDTFA--VIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMI 375
           L T+++ F    I WLPF+S  KL F  +L  P   G  ++Y  F RP I
Sbjct: 96  LMTVMERFGDFTISWLPFYSEAKLMFFIYLWYPKTKGTTYIYGTFFRPYI 145

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>AK065483:Os03g0132300 |
          Length = 288

 Score = 37.0 bits (84), Expect = 0.020
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +1

Query: 262 IEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQ 387
           + WLP +S  KL F  +L  P   G A+VYE F +P I   +
Sbjct: 61  VSWLPMYSEAKLAFVVFLWYPKTLGTAYVYESFFKPWIAKYE 102

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>Os07g0568400:Os07g0568400 |
          Length = 194

 Score = 36.2 bits (82), Expect = 0.034
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 223 FSLLKTLIDTFAVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQ 387
           FS+ +   D   ++  +PF+ + K     WL  P  +GA HVY  ++RP  +  Q
Sbjct: 68  FSIAEIFADQ--ILSSVPFYYHVKFAILVWLQFPSNSGAKHVYRRYMRPFFLKHQ 120

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>Os12g0158600:Os12g0158600 |
          Length = 211

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +1

Query: 256 AVIEWLPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQ 387
           ++I W+P +   KL F  +L  P   G+  VY+ F+RP+++  +
Sbjct: 55  SLISWMPMYGEIKLAFFVYLWYPKTKGSDVVYDTFLRPIVMQYE 98

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>Os08g0205000:Os08g0205000 |
          Length = 458

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 654 PEQKSFPESVIRVEEWIHIPSFQFSFG 574
           P++ S PE+ +RV  W+H+P +   FG
Sbjct: 374 PDRGSLPETELRVISWLHLPLYDMDFG 400

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>AK103521:Os12g0633600 |
          Length = 763

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -3

Query: 878 QPSKARTYLQHFITVQLRNIKSKYDSLEFTPQSGLINSYIKGTEGEIIQNAGLNIVI 708
           QP+  R Y    I  +   ++  +    F P +G I   ++ TE EI+  AGL+ V+
Sbjct: 30  QPANVRVYFGRRIAEEHNRLREAFILERFVPSTGWIVKALQCTEEEILAAAGLDAVV 86

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>AB118011:Os11g0602300 |
          Length = 182

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 436 DDVISAAQKYIEQNGSKAFETLVNK 510
           DD ++A  K+IE+NG +A + L NK
Sbjct: 1   DDFLTALDKFIEENGPEALKKLTNK 25

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>AK069715:Os02g0719100 |
          Length = 706

 Score = 29.6 bits (65), Expect = 3.1
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = -3

Query: 845 FITVQLRNIKSKYDSLEFTPQSGLINSYIKGTEGEIIQNAGLNIVIS*KELAAH 684
           F  V+LR++K+K+ SL+        ++  K   G + +  GLN VIS +E+AAH
Sbjct: 18  FTQVELRSLKAKFLSLKRDSGG---HATTKNLPGLMKKLRGLNEVISEEEIAAH 68

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>AK108378:Os04g0415200 |
          Length = 192

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
 Frame = +1

Query: 271 LPFWSYGKLFFNCWLVLPYFNGAAHVYEHFVRPMIVNQQV---------------VNIWY 405
           +P +S  +L F  +L  P   G   VY+ F+RP+++  Q                + I+Y
Sbjct: 64  IPMYSELRLAFLVYLWYPQTRGTDIVYDTFLRPLVMQYQPNIEERLRYLRANAGDILIFY 123

Query: 406 IPKKENSDKPDDVISAAQKYIEQNGSKAFET 498
           +  K  +D+  D+     +YI    S+   T
Sbjct: 124 L--KNFTDRGYDLFLRGMEYIRSQTSRGSRT 152

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>AK103691:Os03g0673800 |
          Length = 777

 Score = 28.9 bits (63), Expect = 5.4
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -3

Query: 878 QPSKARTYLQHFITVQLRNIKSKYDSLEFTPQSGLINSYIKGTEGEIIQNAGLNIVI 708
           QP   + Y    I  +   ++  +    F P +  I   ++ TE E++  AGL+ V+
Sbjct: 30  QPQNVKVYFGRRIAEENSRLREAFILERFVPSASWILRSLRCTEDELLATAGLDAVV 86

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>Os02g0109100:Os02g0109100 |
          Length = 791

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
 Frame = -2

Query: 714 SNKLKRTSSTSGEHTLCHLMP-----EQKSFPESVIRVEEWIHIPSFQ----FSFGPRSP 562
           S+K K TSSTSG        P      Q   PE V+++EE I   +F+     +    + 
Sbjct: 305 SSKQKETSSTSGMRDSVETSPLLQYRAQTVVPERVLKMEEAIKSRNFESFARLTCADSNQ 364

Query: 561 FHLYLLQNRAP 529
           FH   L    P
Sbjct: 365 FHAVCLDTSPP 375

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>D26537:Os07g0687900 |
          Length = 328

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
 Frame = -2

Query: 405 IPDVYNLLVHNHWPHKMLINMRCTVKVGQDQPAIEKQFSVRPKREPFNYCKCVNESLKKG 226
           IP+VYNL++   W H   +++   VKV     A  K +    K E  N      E +K  
Sbjct: 227 IPNVYNLVLAMLWRHPENVDLD-QVKVVHYCAAGSKPWRFTGKEENMN-----REDIKML 280

Query: 225 KKQLWQNGRISISSYLFNENTFTYR---G*ASETMGPARTSRLLTSTLRKDPDP 73
            K+ W          ++N+ +  Y+     A E   P RT+      ++  P P
Sbjct: 281 VKRWWD---------IYNDESLDYKEEEDNADEASQPMRTALAEAGAVKYFPAP 325

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>AK120485:Os11g0629300 |
          Length = 220

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 738 HTKCRTKYSNKLKRTSSTSGE 676
           H   +T Y  K+KR+SST GE
Sbjct: 126 HKSSKTNYDTKMKRSSSTHGE 146

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>AK107065:Os07g0687900 |
          Length = 328

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
 Frame = -2

Query: 405 IPDVYNLLVHNHWPHKMLINMRCTVKVGQDQPAIEKQFSVRPKREPFNYCKCVNESLKKG 226
           IP+VYNL++   W H   +++   VKV     A  K +    K E  N      E +K  
Sbjct: 227 IPNVYNLVLAMLWRHPENVDLD-QVKVVHYCAAGSKPWRFTGKEENMN-----REDIKML 280

Query: 225 KKQLWQNGRISISSYLFNENTFTYR---G*ASETMGPARTSRLLTSTLRKDPDP 73
            K+ W          ++N+ +  Y+     A E   P RT+      ++  P P
Sbjct: 281 VKRWWD---------IYNDESLDYKEEEDNADEASQPMRTALAEAGAVKYFPAP 325

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>AK100055:Os06g0690700 |
          Length = 822

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 97 HLEERSGPHLPSNPLSRSCES 35
          HL  R  PHLPS PL+ +  S
Sbjct: 34 HLRRRCAPHLPSKPLNLAARS 54

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>AK099548:Os07g0687900 |
          Length = 328

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
 Frame = -2

Query: 405 IPDVYNLLVHNHWPHKMLINMRCTVKVGQDQPAIEKQFSVRPKREPFNYCKCVNESLKKG 226
           IP+VYNL++   W H   +++   VKV     A  K +    K E  N      E +K  
Sbjct: 227 IPNVYNLVLAMLWRHPENVDLD-QVKVVHYCAAGSKPWRFTGKEENMN-----REDIKML 280

Query: 225 KKQLWQNGRISISSYLFNENTFTYR---G*ASETMGPARTSRLLTSTLRKDPDP 73
            K+ W          ++N+ +  Y+     A E   P RT+      ++  P P
Sbjct: 281 VKRWWD---------IYNDESLDYKEEEDNADEASQPMRTALAEAGAVKYFPAP 325


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 23,950,380
Number of extensions: 497362
Number of successful extensions: 1284
Number of sequences better than 10.0: 27
Number of HSP's gapped: 1282
Number of HSP's successfully gapped: 32
Length of query: 310
Length of database: 15,399,855
Length adjustment: 100
Effective length of query: 210
Effective length of database: 11,395,755
Effective search space: 2393108550
Effective search space used: 2393108550
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result