| Clone Name | FLbaf153f18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001054651.1| Oryza sativa (japonica cultivar-group) Os02g0747500 (Os02g0747500) mRNA, complete cds Length = 931 Score = 248 bits (125), Expect = 3e-62 Identities = 296/353 (83%) Strand = Plus / Plus Query: 263 ttgaatggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgc 322 |||||||||| ||||| |||||||| | ||| ||||||||||||||||||||||||||| Sbjct: 343 ttgaatggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgc 402 Query: 323 cctactttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaacc 382 ||||||| || ||||| || ||||| ||||| || |||||| |||||||| |||| |||| Sbjct: 403 cctacttcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaacc 462 Query: 383 agcaagttgtaaacatctggtatattccaaaaaaggaaaattcagataaacccgacgatg 442 ||||| | || || |||||||| || |||| |||||| | ||||||| |||||| |||| Sbjct: 463 agcaaatagttaatatctggtacatcccaagaaaggatgagtcagatagacccgatgatg 522 Query: 443 taatttcagctgcacagaaatacattgaacaaaatggatctaaagcatttgagactctcg 502 | || |||||||| |||| ||||||||||||||||||||| | ||| ||||| | ||| | Sbjct: 523 tgatatcagctgcgcagagatacattgaacaaaatggatcaagagcgtttgaaagtctgg 582 Query: 503 ttaacaagtttaagactacaaacgcgaggcgctctattttggaggaggtagaggtggaaa 562 |||||||||||||| || ||||| | |||||||| ||| ||||||||||||||| |||| Sbjct: 583 ttaacaagtttaaggcttcaaacacaaggcgctccattctggaggaggtagaggctgaaa 642 Query: 563 ggagagcgagggccgaacgagaactggaagctagggatgtgaatccattcttc 615 | ||||| | ||| |||| |||| ||||| ||||||| |||||| |||||| Sbjct: 643 gaagagccaaggctgaactagaagcagaagcaagggatgagaatcctttcttc 695 Score = 67.9 bits (34), Expect = 6e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 77 tccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggcccatagtt 136 ||||||||||||||||||||| | || | ||| |||||||||| || ||||| |||||| Sbjct: 150 tccggatctttcctcaaggtggtggtaaagaacttggatgttcttgcggggcctatagtt 209 Query: 137 tcactcgcttatcc 150 ||||| |||||||| Sbjct: 210 tcacttgcttatcc 223
>dbj|AK108482.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-F05, full insert sequence Length = 932 Score = 248 bits (125), Expect = 3e-62 Identities = 296/353 (83%) Strand = Plus / Plus Query: 263 ttgaatggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgc 322 |||||||||| ||||| |||||||| | ||| ||||||||||||||||||||||||||| Sbjct: 344 ttgaatggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgc 403 Query: 323 cctactttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaacc 382 ||||||| || ||||| || ||||| ||||| || |||||| |||||||| |||| |||| Sbjct: 404 cctacttcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaacc 463 Query: 383 agcaagttgtaaacatctggtatattccaaaaaaggaaaattcagataaacccgacgatg 442 ||||| | || || |||||||| || |||| |||||| | ||||||| |||||| |||| Sbjct: 464 agcaaatagttaatatctggtacatcccaagaaaggatgagtcagatagacccgatgatg 523 Query: 443 taatttcagctgcacagaaatacattgaacaaaatggatctaaagcatttgagactctcg 502 | || |||||||| |||| ||||||||||||||||||||| | ||| ||||| | ||| | Sbjct: 524 tgatatcagctgcgcagagatacattgaacaaaatggatcaagagcgtttgaaagtctgg 583 Query: 503 ttaacaagtttaagactacaaacgcgaggcgctctattttggaggaggtagaggtggaaa 562 |||||||||||||| || ||||| | |||||||| ||| ||||||||||||||| |||| Sbjct: 584 ttaacaagtttaaggcttcaaacacaaggcgctccattctggaggaggtagaggctgaaa 643 Query: 563 ggagagcgagggccgaacgagaactggaagctagggatgtgaatccattcttc 615 | ||||| | ||| |||| |||| ||||| ||||||| |||||| |||||| Sbjct: 644 gaagagccaaggctgaactagaagcagaagcaagggatgagaatcccttcttc 696 Score = 67.9 bits (34), Expect = 6e-08 Identities = 64/74 (86%) Strand = Plus / Plus Query: 77 tccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggcccatagtt 136 ||||||||||||||||||||| | || | ||| |||||||||| || ||||| |||||| Sbjct: 151 tccggatctttcctcaaggtggtggtaaagaacttggatgttcttgcggggcctatagtt 210 Query: 137 tcactcgcttatcc 150 ||||| |||||||| Sbjct: 211 tcacttgcttatcc 224
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 178 bits (90), Expect = 2e-41 Identities = 204/242 (84%) Strand = Plus / Plus Query: 269 ggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgccctact 328 |||| ||||| |||||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct: 31427251 ggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgccctact 31427310 Query: 329 ttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaaccagcaag 388 | || ||||| || ||||| ||||| || |||||| |||||||| |||| ||||||||| Sbjct: 31427311 tcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaaccagcaaa 31427370 Query: 389 ttgtaaacatctggtatattccaaaaaaggaaaattcagataaacccgacgatgtaattt 448 | || || |||||||| || |||| |||||| | ||||||| |||||| ||||| || | Sbjct: 31427371 tagttaatatctggtacatcccaagaaaggatgagtcagatagacccgatgatgtgatat 31427430 Query: 449 cagctgcacagaaatacattgaacaaaatggatctaaagcatttgagactctcgttaaca 508 ||||||| |||| ||||||||||||||||||||| | ||| ||||| | ||| ||||||| Sbjct: 31427431 cagctgcgcagagatacattgaacaaaatggatcaagagcgtttgaaagtctggttaaca 31427490 Query: 509 ag 510 || Sbjct: 31427491 ag 31427492 Score = 61.9 bits (31), Expect = 4e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 509 agtttaagactacaaacgcgaggcgctctattttggaggaggtagaggtggaaaggagag 568 |||||||| || ||||| | |||||||| ||| ||||||||||||||| ||||| |||| Sbjct: 31427653 agtttaaggcttcaaacacaaggcgctccattctggaggaggtagaggctgaaagaagag 31427712 Query: 569 cgagggccgaacgagaactggaagctagggatgtgaatccattcttc 615 | | ||| |||| |||| ||||| ||||||| |||||| |||||| Sbjct: 31427713 ccaaggctgaactagaagcagaagcaagggatgagaatcctttcttc 31427759 Score = 44.1 bits (22), Expect = 0.89 Identities = 31/34 (91%) Strand = Plus / Plus Query: 126 ggcccatagtttcactcgcttatcctctgtaagt 159 |||| ||||||||||| |||||||| |||||||| Sbjct: 31426732 ggcctatagtttcacttgcttatccactgtaagt 31426765 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 tccggatctttcctcaaggtg 97 ||||||||||||||||||||| Sbjct: 31425839 tccggatctttcctcaaggtg 31425859
>dbj|AP005733.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0024K03 Length = 119796 Score = 178 bits (90), Expect = 2e-41 Identities = 204/242 (84%) Strand = Plus / Plus Query: 269 ggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgccctact 328 |||| ||||| |||||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct: 109825 ggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgccctact 109884 Query: 329 ttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaaccagcaag 388 | || ||||| || ||||| ||||| || |||||| |||||||| |||| ||||||||| Sbjct: 109885 tcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaaccagcaaa 109944 Query: 389 ttgtaaacatctggtatattccaaaaaaggaaaattcagataaacccgacgatgtaattt 448 | || || |||||||| || |||| |||||| | ||||||| |||||| ||||| || | Sbjct: 109945 tagttaatatctggtacatcccaagaaaggatgagtcagatagacccgatgatgtgatat 110004 Query: 449 cagctgcacagaaatacattgaacaaaatggatctaaagcatttgagactctcgttaaca 508 ||||||| |||| ||||||||||||||||||||| | ||| ||||| | ||| ||||||| Sbjct: 110005 cagctgcgcagagatacattgaacaaaatggatcaagagcgtttgaaagtctggttaaca 110064 Query: 509 ag 510 || Sbjct: 110065 ag 110066 Score = 61.9 bits (31), Expect = 4e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 509 agtttaagactacaaacgcgaggcgctctattttggaggaggtagaggtggaaaggagag 568 |||||||| || ||||| | |||||||| ||| ||||||||||||||| ||||| |||| Sbjct: 110227 agtttaaggcttcaaacacaaggcgctccattctggaggaggtagaggctgaaagaagag 110286 Query: 569 cgagggccgaacgagaactggaagctagggatgtgaatccattcttc 615 | | ||| |||| |||| ||||| ||||||| |||||| |||||| Sbjct: 110287 ccaaggctgaactagaagcagaagcaagggatgagaatcctttcttc 110333 Score = 44.1 bits (22), Expect = 0.89 Identities = 31/34 (91%) Strand = Plus / Plus Query: 126 ggcccatagtttcactcgcttatcctctgtaagt 159 |||| ||||||||||| |||||||| |||||||| Sbjct: 109306 ggcctatagtttcacttgcttatccactgtaagt 109339 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 tccggatctttcctcaaggtg 97 ||||||||||||||||||||| Sbjct: 108413 tccggatctttcctcaaggtg 108433
>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078N11 Length = 155168 Score = 178 bits (90), Expect = 2e-41 Identities = 204/242 (84%) Strand = Plus / Plus Query: 269 ggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgccctact 328 |||| ||||| |||||||| | ||| ||||||||||||||||||||||||||||||||| Sbjct: 62648 ggcttcctttatggtcttatgctaaattgtttttcaattgctggttggtcttgccctact 62707 Query: 329 ttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaaccagcaag 388 | || ||||| || ||||| ||||| || |||||| |||||||| |||| ||||||||| Sbjct: 62708 tcaatggtgctgcacatgtctatgaacactttgtgaggccaatggttgtcaaccagcaaa 62767 Query: 389 ttgtaaacatctggtatattccaaaaaaggaaaattcagataaacccgacgatgtaattt 448 | || || |||||||| || |||| |||||| | ||||||| |||||| ||||| || | Sbjct: 62768 tagttaatatctggtacatcccaagaaaggatgagtcagatagacccgatgatgtgatat 62827 Query: 449 cagctgcacagaaatacattgaacaaaatggatctaaagcatttgagactctcgttaaca 508 ||||||| |||| ||||||||||||||||||||| | ||| ||||| | ||| ||||||| Sbjct: 62828 cagctgcgcagagatacattgaacaaaatggatcaagagcgtttgaaagtctggttaaca 62887 Query: 509 ag 510 || Sbjct: 62888 ag 62889 Score = 61.9 bits (31), Expect = 4e-06 Identities = 88/107 (82%) Strand = Plus / Plus Query: 509 agtttaagactacaaacgcgaggcgctctattttggaggaggtagaggtggaaaggagag 568 |||||||| || ||||| | |||||||| ||| ||||||||||||||| ||||| |||| Sbjct: 63050 agtttaaggcttcaaacacaaggcgctccattctggaggaggtagaggctgaaagaagag 63109 Query: 569 cgagggccgaacgagaactggaagctagggatgtgaatccattcttc 615 | | ||| |||| |||| ||||| ||||||| |||||| |||||| Sbjct: 63110 ccaaggctgaactagaagcagaagcaagggatgagaatcctttcttc 63156 Score = 44.1 bits (22), Expect = 0.89 Identities = 31/34 (91%) Strand = Plus / Plus Query: 126 ggcccatagtttcactcgcttatcctctgtaagt 159 |||| ||||||||||| |||||||| |||||||| Sbjct: 62129 ggcctatagtttcacttgcttatccactgtaagt 62162 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 tccggatctttcctcaaggtg 97 ||||||||||||||||||||| Sbjct: 61236 tccggatctttcctcaaggtg 61256
>gb|AY110077.1| Zea mays CL20590_1 mRNA sequence Length = 1056 Score = 141 bits (71), Expect = 5e-30 Identities = 134/155 (86%) Strand = Plus / Plus Query: 265 gaatggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgccc 324 |||||||| ||||| |||||||| | ||| ||||| |||||||||||||| || ||||| Sbjct: 377 gaatggcttcctttctggtcttatgcaaagctgttcttcaattgctggttagtattgcca 436 Query: 325 tactttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaaccag 384 | || || || || || ||||| ||||||||||||||| ||||||||||||| || ||| Sbjct: 437 cagttcaatggagctgcacatgtatatgagcattttgtgaggccaatgattgtaaatcag 496 Query: 385 caagttgtaaacatctggtatattccaaaaaagga 419 ||||||||||||||||||||||||||||| ||||| Sbjct: 497 caagttgtaaacatctggtatattccaaagaagga 531 Score = 63.9 bits (32), Expect = 1e-06 Identities = 68/80 (85%) Strand = Plus / Plus Query: 77 tccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggcccatagtt 136 |||||||||||||||||||| | |||| |||| ||||||| ||||| ||||| | ||| Sbjct: 182 tccggatctttcctcaaggtcttggtcaacaacatggatgtcctcgcggggcctttggtt 241 Query: 137 tcactcgcttatcctctgta 156 ||||| || ||||||||||| Sbjct: 242 tcacttgcgtatcctctgta 261 Score = 52.0 bits (26), Expect = 0.004 Identities = 35/38 (92%) Strand = Plus / Plus Query: 529 aggcgctctattttggaggaggtagaggtggaaaggag 566 |||||||| ||| |||||||||||||||| |||||||| Sbjct: 641 aggcgctcaattctggaggaggtagaggttgaaaggag 678
>emb|CT830095.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN065D02, full insert sequence Length = 998 Score = 91.7 bits (46), Expect = 4e-15 Identities = 136/166 (81%) Strand = Plus / Plus Query: 257 cagtaattgaatggctccctttttggtcttacggaaaactgtttttcaattgctggttgg 316 |||||||||||||||| ||||||||||| || | ||| |||| ||||| |||||||||| Sbjct: 257 cagtaattgaatggcttcctttttggtcctatgcaaagttgttcttcaactgctggttgg 316 Query: 317 tcttgccctactttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattg 376 |||| || | ||| | ||||| || |||||||||| || ||||||||||||||| ||| Sbjct: 317 tcttaccttgcttccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttg 376 Query: 377 tgaaccagcaagttgtaaacatctggtatattccaaaaaaggaaaa 422 |||| | ||| | ||||| |||||||| |||||| ||| ||||| Sbjct: 377 tgaatcgtcaaatagtaaatgtctggtatgttccaagaaaagaaaa 422 Score = 63.9 bits (32), Expect = 1e-06 Identities = 68/80 (85%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggccc 130 |||||||| ||||||||||||||| |||| | || |||| | || || ||||||||||| Sbjct: 64 atggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcca 123 Query: 131 atagtttcactcgcttatcc 150 |||||||||| |||||||| Sbjct: 124 ttagtttcacttgcttatcc 143
>emb|CT830094.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA010G06, full insert sequence Length = 1022 Score = 91.7 bits (46), Expect = 4e-15 Identities = 136/166 (81%) Strand = Plus / Plus Query: 257 cagtaattgaatggctccctttttggtcttacggaaaactgtttttcaattgctggttgg 316 |||||||||||||||| ||||||||||| || | ||| |||| ||||| |||||||||| Sbjct: 300 cagtaattgaatggcttcctttttggtcctatgcaaagttgttcttcaactgctggttgg 359 Query: 317 tcttgccctactttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattg 376 |||| || | ||| | ||||| || |||||||||| || ||||||||||||||| ||| Sbjct: 360 tcttaccttgcttccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttg 419 Query: 377 tgaaccagcaagttgtaaacatctggtatattccaaaaaaggaaaa 422 |||| | ||| | ||||| |||||||| |||||| ||| ||||| Sbjct: 420 tgaatcgtcaaatagtaaatgtctggtatgttccaagaaaagaaaa 465 Score = 63.9 bits (32), Expect = 1e-06 Identities = 68/80 (85%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggccc 130 |||||||| ||||||||||||||| |||| | || |||| | || || ||||||||||| Sbjct: 107 atggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcca 166 Query: 131 atagtttcactcgcttatcc 150 |||||||||| |||||||| Sbjct: 167 ttagtttcacttgcttatcc 186
>ref|NM_001063739.1| Oryza sativa (japonica cultivar-group) Os06g0226600 (Os06g0226600) mRNA, complete cds Length = 1083 Score = 91.7 bits (46), Expect = 4e-15 Identities = 136/166 (81%) Strand = Plus / Plus Query: 257 cagtaattgaatggctccctttttggtcttacggaaaactgtttttcaattgctggttgg 316 |||||||||||||||| ||||||||||| || | ||| |||| ||||| |||||||||| Sbjct: 363 cagtaattgaatggcttcctttttggtcctatgcaaagttgttcttcaactgctggttgg 422 Query: 317 tcttgccctactttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattg 376 |||| || | ||| | ||||| || |||||||||| || ||||||||||||||| ||| Sbjct: 423 tcttaccttgcttccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttg 482 Query: 377 tgaaccagcaagttgtaaacatctggtatattccaaaaaaggaaaa 422 |||| | ||| | ||||| |||||||| |||||| ||| ||||| Sbjct: 483 tgaatcgtcaaatagtaaatgtctggtatgttccaagaaaagaaaa 528 Score = 63.9 bits (32), Expect = 1e-06 Identities = 68/80 (85%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggccc 130 |||||||| ||||||||||||||| |||| | || |||| | || || ||||||||||| Sbjct: 170 atggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcca 229 Query: 131 atagtttcactcgcttatcc 150 |||||||||| |||||||| Sbjct: 230 ttagtttcacttgcttatcc 249
>dbj|AK102752.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033106M05, full insert sequence Length = 1084 Score = 91.7 bits (46), Expect = 4e-15 Identities = 136/166 (81%) Strand = Plus / Plus Query: 257 cagtaattgaatggctccctttttggtcttacggaaaactgtttttcaattgctggttgg 316 |||||||||||||||| ||||||||||| || | ||| |||| ||||| |||||||||| Sbjct: 364 cagtaattgaatggcttcctttttggtcctatgcaaagttgttcttcaactgctggttgg 423 Query: 317 tcttgccctactttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattg 376 |||| || | ||| | ||||| || |||||||||| || ||||||||||||||| ||| Sbjct: 424 tcttaccttgcttccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttg 483 Query: 377 tgaaccagcaagttgtaaacatctggtatattccaaaaaaggaaaa 422 |||| | ||| | ||||| |||||||| |||||| ||| ||||| Sbjct: 484 tgaatcgtcaaatagtaaatgtctggtatgttccaagaaaagaaaa 529 Score = 63.9 bits (32), Expect = 1e-06 Identities = 68/80 (85%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggccc 130 |||||||| ||||||||||||||| |||| | || |||| | || || ||||||||||| Sbjct: 171 atggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcca 230 Query: 131 atagtttcactcgcttatcc 150 |||||||||| |||||||| Sbjct: 231 ttagtttcacttgcttatcc 250
>dbj|AK061806.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-A03, full insert sequence Length = 1072 Score = 91.7 bits (46), Expect = 4e-15 Identities = 136/166 (81%) Strand = Plus / Plus Query: 257 cagtaattgaatggctccctttttggtcttacggaaaactgtttttcaattgctggttgg 316 |||||||||||||||| ||||||||||| || | ||| |||| ||||| |||||||||| Sbjct: 307 cagtaattgaatggcttcctttttggtcctatgcaaagttgttcttcaactgctggttgg 366 Query: 317 tcttgccctactttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattg 376 |||| || | ||| | ||||| || |||||||||| || ||||||||||||||| ||| Sbjct: 367 tcttaccttgcttccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttg 426 Query: 377 tgaaccagcaagttgtaaacatctggtatattccaaaaaaggaaaa 422 |||| | ||| | ||||| |||||||| |||||| ||| ||||| Sbjct: 427 tgaatcgtcaaatagtaaatgtctggtatgttccaagaaaagaaaa 472 Score = 63.9 bits (32), Expect = 1e-06 Identities = 68/80 (85%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggtgctcgtcagcaacctggatgttctcgccgggccc 130 |||||||| ||||||||||||||| |||| | || |||| | || || ||||||||||| Sbjct: 114 atggggtctggatctttcctcaagctgctggccaacaacttcgacgtcctcgccgggcca 173 Query: 131 atagtttcactcgcttatcc 150 |||||||||| |||||||| Sbjct: 174 ttagtttcacttgcttatcc 193
>gb|AY106282.1| Zea mays PCO142333 mRNA sequence Length = 802 Score = 89.7 bits (45), Expect = 2e-14 Identities = 183/229 (79%) Strand = Plus / Plus Query: 268 tggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgccctac 327 ||||| || |||||||| || | ||| ||||| || || ||||||||||||||||| | Sbjct: 430 tggcttccattttggtcgtatgcaaagctgttctttaactgctggttggtcttgccttgg 489 Query: 328 tttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaaccagcaa 387 || || ||||| || ||||||| || |||||||||||||||||| ||||||||| ||| Sbjct: 490 ttcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaa 549 Query: 388 gttgtaaacatctggtatattccaaaaaaggaaaattcagataaacccgacgatgtaatt 447 | || ||||| ||||||||||||| ||| || || || |||| | || ||||| | Sbjct: 550 atagtgaacatatggtatattccaagaaatgagaagctaggtaaatctgatgatgttctg 609 Query: 448 tcagctgcacagaaatacattgaacaaaatggatctaaagcatttgaga 496 ||||||||| ||| ||| ||||||||||| ||| | |||||||||||| Sbjct: 610 tcagctgcagagagatatattgaacaaaacggaccagaagcatttgaga 658 Score = 58.0 bits (29), Expect = 6e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggtgct 99 ||||||||||||||||||||||||||||| Sbjct: 226 atggggtccggatctttcctcaaggtgct 254
>gb|AY107684.1| Zea mays PCO095447 mRNA sequence Length = 627 Score = 87.7 bits (44), Expect = 7e-14 Identities = 65/72 (90%) Strand = Plus / Plus Query: 439 gatgtaatttcagctgcacagaaatacattgaacaaaatggatctaaagcatttgagact 498 |||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||| | Sbjct: 15 gatgtaatttcagctgcacagaggtacattgagcaaaatggatcaaaagcgtttgagaat 74 Query: 499 ctcgttaacaag 510 || ||||||||| Sbjct: 75 cttgttaacaag 86
>gb|BT017605.1| Zea mays clone EL01N0432C07.c mRNA sequence Length = 1249 Score = 81.8 bits (41), Expect = 4e-12 Identities = 119/145 (82%) Strand = Plus / Plus Query: 268 tggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgccctac 327 ||||| || |||||||| || | ||| ||||| || || ||||||||||||||||| | Sbjct: 478 tggcttccattttggtcgtatgcaaagctgttctttaactgctggttggtcttgccttgg 537 Query: 328 tttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaaccagcaa 387 || || ||||| || ||||||| || |||||||||||||||||| ||||||||| ||| Sbjct: 538 ttcaatggtgctgcctatgtttacgaccattttgtgcggccaatgtttgtgaaccgccaa 597 Query: 388 gttgtaaacatctggtatattccaa 412 | || ||||| ||||||||||||| Sbjct: 598 atagtgaacatatggtatattccaa 622 Score = 58.0 bits (29), Expect = 6e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggtgct 99 ||||||||||||||||||||||||||||| Sbjct: 274 atggggtccggatctttcctcaaggtgct 302
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 67.9 bits (34), Expect = 6e-08 Identities = 124/154 (80%) Strand = Plus / Minus Query: 269 ggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgccctact 328 |||| ||||||||||| || | ||| |||| ||||| |||||||||||||| || | || Sbjct: 6571978 ggcttcctttttggtcctatgcaaagttgttcttcaactgctggttggtcttaccttgct 6571919 Query: 329 ttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaaccagcaag 388 | | ||||| || |||||||||| || ||||||||||||||| ||||||| | ||| Sbjct: 6571918 tccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttgtgaatcgtcaaa 6571859 Query: 389 ttgtaaacatctggtatattccaaaaaaggaaaa 422 | ||||| |||||||| |||||| ||| ||||| Sbjct: 6571858 tagtaaatgtctggtatgttccaagaaaagaaaa 6571825 Score = 42.1 bits (21), Expect = 3.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 71 atggggtccggatctttcctcaaggtgct 99 |||||||| ||||||||||||||| |||| Sbjct: 6574009 atggggtctggatctttcctcaagctgct 6573981
>dbj|AP003569.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0425F05 Length = 162858 Score = 67.9 bits (34), Expect = 6e-08 Identities = 124/154 (80%) Strand = Plus / Minus Query: 269 ggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgccctact 328 |||| ||||||||||| || | ||| |||| ||||| |||||||||||||| || | || Sbjct: 6104 ggcttcctttttggtcctatgcaaagttgttcttcaactgctggttggtcttaccttgct 6045 Query: 329 ttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaaccagcaag 388 | | ||||| || |||||||||| || ||||||||||||||| ||||||| | ||| Sbjct: 6044 tccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttgtgaatcgtcaaa 5985 Query: 389 ttgtaaacatctggtatattccaaaaaaggaaaa 422 | ||||| |||||||| |||||| ||| ||||| Sbjct: 5984 tagtaaatgtctggtatgttccaagaaaagaaaa 5951 Score = 42.1 bits (21), Expect = 3.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 71 atggggtccggatctttcctcaaggtgct 99 |||||||| ||||||||||||||| |||| Sbjct: 8135 atggggtctggatctttcctcaagctgct 8107
>dbj|AP003513.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0690H04 Length = 137319 Score = 67.9 bits (34), Expect = 6e-08 Identities = 124/154 (80%) Strand = Plus / Minus Query: 269 ggctccctttttggtcttacggaaaactgtttttcaattgctggttggtcttgccctact 328 |||| ||||||||||| || | ||| |||| ||||| |||||||||||||| || | || Sbjct: 88354 ggcttcctttttggtcctatgcaaagttgttcttcaactgctggttggtcttaccttgct 88295 Query: 329 ttaacggtgcagcgcatgtttatgagcattttgtgcggccaatgattgtgaaccagcaag 388 | | ||||| || |||||||||| || ||||||||||||||| ||||||| | ||| Sbjct: 88294 tccatggtgctgcttatgtttatgatcactttgtgcggccaatgtttgtgaatcgtcaaa 88235 Query: 389 ttgtaaacatctggtatattccaaaaaaggaaaa 422 | ||||| |||||||| |||||| ||| ||||| Sbjct: 88234 tagtaaatgtctggtatgttccaagaaaagaaaa 88201 Score = 42.1 bits (21), Expect = 3.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 71 atggggtccggatctttcctcaaggtgct 99 |||||||| ||||||||||||||| |||| Sbjct: 90385 atggggtctggatctttcctcaagctgct 90357
>gb|DQ244758.1| Zea mays clone 10524 mRNA sequence Length = 583 Score = 58.0 bits (29), Expect = 6e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggtgct 99 ||||||||||||||||||||||||||||| Sbjct: 208 atggggtccggatctttcctcaaggtgct 236
>emb|CT830798.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244C09, full insert sequence Length = 2302 Score = 44.1 bits (22), Expect = 0.89 Identities = 25/26 (96%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggt 96 ||||||||||||||||| |||||||| Sbjct: 247 atggggtccggatctttgctcaaggt 272
>ref|NM_001074762.1| Oryza sativa (japonica cultivar-group) Os11g0602300 (Os11g0602300) mRNA, complete cds Length = 1429 Score = 44.1 bits (22), Expect = 0.89 Identities = 25/26 (96%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggt 96 ||||||||||||||||| |||||||| Sbjct: 248 atggggtccggatctttgctcaaggt 273
>ref|XM_001122007.1| PREDICTED: Apis mellifera similar to tenectin CG13648-PA (LOC726252), partial mRNA Length = 10024 Score = 44.1 bits (22), Expect = 0.89 Identities = 22/22 (100%) Strand = Plus / Plus Query: 8 agaaaccagaggaaggaacgca 29 |||||||||||||||||||||| Sbjct: 7389 agaaaccagaggaaggaacgca 7410
>gb|AC109365.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034P08, complete sequence Length = 173088 Score = 44.1 bits (22), Expect = 0.89 Identities = 25/26 (96%) Strand = Plus / Minus Query: 71 atggggtccggatctttcctcaaggt 96 ||||||||||||||||| |||||||| Sbjct: 23143 atggggtccggatctttgctcaaggt 23118
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 44.1 bits (22), Expect = 0.89 Identities = 25/26 (96%) Strand = Plus / Minus Query: 71 atggggtccggatctttcctcaaggt 96 ||||||||||||||||| |||||||| Sbjct: 134661 atggggtccggatctttgctcaaggt 134636
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 44.1 bits (22), Expect = 0.89 Identities = 25/26 (96%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggt 96 ||||||||||||||||| |||||||| Sbjct: 22318155 atggggtccggatctttgctcaaggt 22318180
>emb|AL442223.13| Human DNA sequence from clone RP11-426P2 on chromosome 1 Contains the 5' end of a variant of the DAB1 gene for disabled homolog 1 (Drosophila) and a CpG island, complete sequence Length = 54683 Score = 44.1 bits (22), Expect = 0.89 Identities = 22/22 (100%) Strand = Plus / Plus Query: 455 cacagaaatacattgaacaaaa 476 |||||||||||||||||||||| Sbjct: 11509 cacagaaatacattgaacaaaa 11530
>gb|AC016205.7| Homo sapiens, clone RP11-25C13, complete sequence Length = 167292 Score = 44.1 bits (22), Expect = 0.89 Identities = 22/22 (100%) Strand = Plus / Plus Query: 296 tgtttttcaattgctggttggt 317 |||||||||||||||||||||| Sbjct: 24796 tgtttttcaattgctggttggt 24817
>dbj|AK103473.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033130B07, full insert sequence Length = 1430 Score = 44.1 bits (22), Expect = 0.89 Identities = 25/26 (96%) Strand = Plus / Plus Query: 71 atggggtccggatctttcctcaaggt 96 ||||||||||||||||| |||||||| Sbjct: 249 atggggtccggatctttgctcaaggt 274
>gb|AC188633.5| Canis Familiaris chromosome 2, clone XX-361N13, complete sequence Length = 188168 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 204 cattttgccacaattgcttttttcc 228 |||||||||||| |||||||||||| Sbjct: 123023 cattttgccacatttgcttttttcc 122999
>gb|AC115714.14| Mus musculus chromosome 12, clone RP23-477C24, complete sequence Length = 164272 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 600 tgtgaatccattcttccaccc 620 ||||||||||||||||||||| Sbjct: 100158 tgtgaatccattcttccaccc 100138
>gb|BC103504.1| Homo sapiens cDNA clone IMAGE:40001827, with apparent retained intron Length = 3555 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 700 ttttagcttattactatattt 720 ||||||||||||||||||||| Sbjct: 2728 ttttagcttattactatattt 2708
>gb|AC022023.7| Homo sapiens chromosome 10 clone RP11-411P18, complete sequence Length = 160420 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 700 ttttagcttattactatattt 720 ||||||||||||||||||||| Sbjct: 114265 ttttagcttattactatattt 114245
>gb|AC108035.3| Homo sapiens BAC clone RP11-140P5 from 4, complete sequence Length = 137055 Score = 42.1 bits (21), Expect = 3.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 399 ctggtatattccaaaaaaggaaaat 423 |||||||||| |||||||||||||| Sbjct: 99391 ctggtatattacaaaaaaggaaaat 99415
>emb|AL928977.10| Zebrafish DNA sequence from clone DKEY-24D19 in linkage group 20, complete sequence Length = 165014 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 830 gctgaacagttatgaaatgtt 850 ||||||||||||||||||||| Sbjct: 100624 gctgaacagttatgaaatgtt 100604
>dbj|AP000776.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-748H22, complete sequence Length = 191270 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 catgtttatgagcattttgtg 363 ||||||||||||||||||||| Sbjct: 32457 catgtttatgagcattttgtg 32477
>gb|AC145914.4| Gallus gallus BAC clone CH261-78G10 from chromosome unknown, complete sequence Length = 228201 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 720 tagtcctgcattttgtatgat 740 ||||||||||||||||||||| Sbjct: 133772 tagtcctgcattttgtatgat 133752
>emb|AL355543.13| Human DNA sequence from clone RP11-86E10 on chromosome 10 Contains the ADRB1 gene for adrenergic beta-1- receptor, a ubiquitin-conjugating enzyme E2 variant 1 (UBE2V1) pseudogene, the gene for CTCL tumor antigen L14-2 (FLJ10188 DKFZp762M1412 FLJ32946 FLJ37179 FLJ21086 FLJ32946 FLJ35301), the 5' end of the TDRD1 gene for tudor domain containing 1 and three CpG islands, complete sequence Length = 179009 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 700 ttttagcttattactatattt 720 ||||||||||||||||||||| Sbjct: 122310 ttttagcttattactatattt 122330
>gb|AC163609.4| Mus musculus chromosome 1, clone RP24-128P11, complete sequence Length = 164997 Score = 42.1 bits (21), Expect = 3.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 342 gcatgtttatgagcattttgt 362 ||||||||||||||||||||| Sbjct: 37767 gcatgtttatgagcattttgt 37747 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 181,237,605 Number of extensions: 9841763 Number of successful extensions: 202883 Number of sequences better than 10.0: 37 Number of HSP's gapped: 202872 Number of HSP's successfully gapped: 61 Length of query: 931 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 908 Effective length of database: 18,503,978,556 Effective search space: 16801612528848 Effective search space used: 16801612528848 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)