| Clone Name | FLbaf153f16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055O13, full insert sequence Length = 1598 Score = 289 bits (146), Expect = 1e-74 Identities = 392/474 (82%) Strand = Plus / Plus Query: 319 tgaaggcaagataaagactgtggctctgacgaacttcgacacagagaggctgcaaataat 378 |||||| ||||||||||| || |||||||| |||||||| ||||| |||||||| ||||| Sbjct: 742 tgaaggtaagataaagacagtagctctgacaaacttcgatacagacaggctgcagataat 801 Query: 379 cctagaaaatggaatacctattgtcagcaaccaggttcaacattctattgtggatatgcg 438 ||||||||||| || || |||||||||||||||||||||||||||||||| || ||||| Sbjct: 802 tctagaaaatggtatcccaattgtcagcaaccaggttcaacattctattgttgacatgcg 861 Query: 439 cccgcagaaaaagatggcagagctttgcgagcttaccggagtcaagcttatcacgtacgg 498 |||||| || |||||||| |||||| ||||||| ||||| || ||||| ||||| || Sbjct: 862 tccgcagcgaagaatggcagaactttgccagcttactggagtaaaacttataacgtatgg 921 Query: 499 cacggtgatgggtggcctattgtccgagaagttcctcgacaccaacatcaacataccttt 558 ||| || |||||||| || |||| |||||||| || |||||||| | |||||||| Sbjct: 922 cacagttatgggtggtctgctgtctgagaagtttcttgacaccaatgtatctataccttt 981 Query: 559 cgccgcacctcctctgaacaccccatccctgcagaagtacaagaggatgatcgatgcttg 618 || | |||||||||||| |||||||| |||||||||| ||| ||||| | ||||| || Sbjct: 982 tgctggacctcctctgaataccccatctttgcagaagtataagcggatggtggatgcctg 1041 Query: 619 gggtggctggagcctgttccaggctctgctccagaccttgaagaaggtgtcgctgaaaca 678 ||||||||||||||||||||||||| |||| ||||| |||||||| || || |||| || Sbjct: 1042 gggtggctggagcctgttccaggctttgcttcagacgttgaagaaagtatcattgaagca 1101 Query: 679 cggcgtcccaatctcgaccgtcgccgtaagatacatactgaaccagacatcggtggcggg 738 || || | || || || || || || ||||||||||||||||||||||| || ||||| Sbjct: 1102 tggtgtttctatatcaactgttgctgtgagatacatactgaaccagacatctgttgcggg 1161 Query: 739 gtcgatggtgggcgtgaggctggggctgtcggagcacatcagggacaccaacgc 792 || |||||||| ||||| ||||| || || || ||||| | ||||||||||| Sbjct: 1162 ttcaatggtgggtgtgagactgggactctctgaacacataaaagacaccaacgc 1215 Score = 174 bits (88), Expect = 6e-40 Identities = 214/256 (83%) Strand = Plus / Plus Query: 11 gaggatttatacggcatgttcatcaacaaagtccggcgcgagcgcccgcccgagatgctg 70 |||||||| || ||| | |||||||| | ||| ||||| ||||| || || ||| |||| Sbjct: 370 gaggatttgtatggccttttcatcaatagagttcggcgtgagcggccacctgagttgctt 429 Query: 71 gaacaagtcagggggcttacaaagtgggtgccgccgccggttaagatgacaagaagctac 130 ||| || ||| |||||| ||||||||||| || || |||||||| ||||| ||||| || Sbjct: 430 gaagaaatcaaggggctaacaaagtgggtaccacctccggttaaaatgaccagaagttat 489 Query: 131 gttgaggagaacatcaacaggtcccggaagaggatggacgtcgctgccctggacatgctg 190 |||||||| || || ||||| || || ||||| ||||| || ||||| ||||||||||| Sbjct: 490 gttgaggataatattaacagatctcgaaagagaatggatgtttctgccttggacatgctg 549 Query: 191 cagttccattggtgggactacgcaaatcccggatatctagatgcactaaagcacatcaca 250 ||||||||||||||||| || ||||| || |||||||| ||||||||||| ||||||||| Sbjct: 550 cagttccattggtgggattatgcaaaccctggatatctggatgcactaaaacacatcaca 609 Query: 251 gacctgaaggaggaag 266 ||||| |||||||||| Sbjct: 610 gacctaaaggaggaag 625
>dbj|AK121487.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150I20, full insert sequence Length = 909 Score = 287 bits (145), Expect = 6e-74 Identities = 391/473 (82%) Strand = Plus / Plus Query: 320 gaaggcaagataaagactgtggctctgacgaacttcgacacagagaggctgcaaataatc 379 ||||| ||||||||||| || |||||||| |||||||| ||||| |||||||| ||||| Sbjct: 75 gaaggtaagataaagacagtagctctgacaaacttcgatacagacaggctgcagataatt 134 Query: 380 ctagaaaatggaatacctattgtcagcaaccaggttcaacattctattgtggatatgcgc 439 ||||||||||| || || |||||||||||||||||||||||||||||||| || ||||| Sbjct: 135 ctagaaaatggtatcccaattgtcagcaaccaggttcaacattctattgttgacatgcgt 194 Query: 440 ccgcagaaaaagatggcagagctttgcgagcttaccggagtcaagcttatcacgtacggc 499 |||||| || |||||||| |||||| ||||||| ||||| || ||||| ||||| ||| Sbjct: 195 ccgcagcgaagaatggcagaactttgccagcttactggagtaaaacttataacgtatggc 254 Query: 500 acggtgatgggtggcctattgtccgagaagttcctcgacaccaacatcaacatacctttc 559 || || |||||||| || |||| |||||||| || |||||||| | |||||||| Sbjct: 255 acagttatgggtggtctgctgtctgagaagtttcttgacaccaatgtatctatacctttt 314 Query: 560 gccgcacctcctctgaacaccccatccctgcagaagtacaagaggatgatcgatgcttgg 619 || | |||||||||||| |||||||| |||||||||| ||| ||||| | ||||| ||| Sbjct: 315 gctggacctcctctgaataccccatctttgcagaagtataagcggatggtggatgcctgg 374 Query: 620 ggtggctggagcctgttccaggctctgctccagaccttgaagaaggtgtcgctgaaacac 679 |||||||||||||||||||||||| |||| ||||| |||||||| || || |||| || Sbjct: 375 ggtggctggagcctgttccaggctttgcttcagacgttgaagaaagtatcattgaagcat 434 Query: 680 ggcgtcccaatctcgaccgtcgccgtaagatacatactgaaccagacatcggtggcgggg 739 || || | || || || || || || ||||||||||||||||||||||| || ||||| Sbjct: 435 ggtgtttctatatcaactgttgctgtgagatacatactgaaccagacatctgttgcgggt 494 Query: 740 tcgatggtgggcgtgaggctggggctgtcggagcacatcagggacaccaacgc 792 || |||||||| ||||| ||||| || || || ||||| | ||||||||||| Sbjct: 495 tcaatggtgggtgtgagactgggactctctgaacacataaaagacaccaacgc 547 Score = 99.6 bits (50), Expect = 3e-17 Identities = 71/78 (91%) Strand = Plus / Plus Query: 189 tgcagttccattggtgggactacgcaaatcccggatatctagatgcactaaagcacatca 248 ||||||||||||||||||| || ||||| || |||||||| ||||||||||| ||||||| Sbjct: 1 tgcagttccattggtgggattatgcaaaccctggatatctggatgcactaaaacacatca 60 Query: 249 cagacctgaaggaggaag 266 ||||||| |||||||||| Sbjct: 61 cagacctaaaggaggaag 78
>dbj|AK068800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158P04, full insert sequence Length = 1463 Score = 287 bits (145), Expect = 6e-74 Identities = 391/473 (82%) Strand = Plus / Plus Query: 320 gaaggcaagataaagactgtggctctgacgaacttcgacacagagaggctgcaaataatc 379 ||||| ||||||||||| || |||||||| |||||||| ||||| |||||||| ||||| Sbjct: 629 gaaggtaagataaagacagtagctctgacaaacttcgatacagacaggctgcagataatt 688 Query: 380 ctagaaaatggaatacctattgtcagcaaccaggttcaacattctattgtggatatgcgc 439 ||||||||||| || || |||||||||||||||||||||||||||||||| || ||||| Sbjct: 689 ctagaaaatggtatcccaattgtcagcaaccaggttcaacattctattgttgacatgcgt 748 Query: 440 ccgcagaaaaagatggcagagctttgcgagcttaccggagtcaagcttatcacgtacggc 499 |||||| || |||||||| |||||| ||||||| ||||| || ||||| ||||| ||| Sbjct: 749 ccgcagcgaagaatggcagaactttgccagcttactggagtaaaacttataacgtatggc 808 Query: 500 acggtgatgggtggcctattgtccgagaagttcctcgacaccaacatcaacatacctttc 559 || || |||||||| || |||| |||||||| || |||||||| | |||||||| Sbjct: 809 acagttatgggtggtctgctgtctgagaagtttcttgacaccaatgtatctatacctttt 868 Query: 560 gccgcacctcctctgaacaccccatccctgcagaagtacaagaggatgatcgatgcttgg 619 || | |||||||||||| |||||||| |||||||||| ||| ||||| | ||||| ||| Sbjct: 869 gctggacctcctctgaataccccatctttgcagaagtataagcggatggtggatgcctgg 928 Query: 620 ggtggctggagcctgttccaggctctgctccagaccttgaagaaggtgtcgctgaaacac 679 |||||||||||||||||||||||| |||| ||||| |||||||| || || |||| || Sbjct: 929 ggtggctggagcctgttccaggctttgcttcagacgttgaagaaagtatcattgaagcat 988 Query: 680 ggcgtcccaatctcgaccgtcgccgtaagatacatactgaaccagacatcggtggcgggg 739 || || | || || || || || || ||||||||||||||||||||||| || ||||| Sbjct: 989 ggtgtttctatatcaactgttgctgtgagatacatactgaaccagacatctgttgcgggt 1048 Query: 740 tcgatggtgggcgtgaggctggggctgtcggagcacatcagggacaccaacgc 792 || |||||||| ||||| ||||| || || || ||||| | ||||||||||| Sbjct: 1049 tcaatggtgggtgtgagactgggactctctgaacacataaaagacaccaacgc 1101 Score = 174 bits (88), Expect = 6e-40 Identities = 214/256 (83%) Strand = Plus / Plus Query: 11 gaggatttatacggcatgttcatcaacaaagtccggcgcgagcgcccgcccgagatgctg 70 |||||||| || ||| | |||||||| | ||| ||||| ||||| || || ||| |||| Sbjct: 377 gaggatttgtatggccttttcatcaatagagttcggcgtgagcggccacctgagttgctt 436 Query: 71 gaacaagtcagggggcttacaaagtgggtgccgccgccggttaagatgacaagaagctac 130 ||| || ||| |||||| ||||||||||| || || |||||||| ||||| ||||| || Sbjct: 437 gaagaaatcaaggggctaacaaagtgggtaccacctccggttaaaatgaccagaagttat 496 Query: 131 gttgaggagaacatcaacaggtcccggaagaggatggacgtcgctgccctggacatgctg 190 |||||||| || || ||||| || || ||||| ||||| || ||||| ||||||||||| Sbjct: 497 gttgaggataatattaacagatctcgaaagagaatggatgtttctgccttggacatgctg 556 Query: 191 cagttccattggtgggactacgcaaatcccggatatctagatgcactaaagcacatcaca 250 ||||||||||||||||| || ||||| || |||||||| ||||||||||| ||||||||| Sbjct: 557 cagttccattggtgggattatgcaaaccctggatatctggatgcactaaaacacatcaca 616 Query: 251 gacctgaaggaggaag 266 ||||| |||||||||| Sbjct: 617 gacctaaaggaggaag 632
>dbj|AK060775.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-B10, full insert sequence Length = 960 Score = 280 bits (141), Expect = 1e-71 Identities = 390/473 (82%) Strand = Plus / Plus Query: 320 gaaggcaagataaagactgtggctctgacgaacttcgacacagagaggctgcaaataatc 379 ||||| ||||||||||| || |||||||| |||||||| ||||| |||||||| ||||| Sbjct: 126 gaaggtaagataaagacagtagctctgacaaacttcgatacagacaggctgcagataatt 185 Query: 380 ctagaaaatggaatacctattgtcagcaaccaggttcaacattctattgtggatatgcgc 439 ||||||||||| || || |||||||||||||||||||||||||||||||| || ||||| Sbjct: 186 ctagaaaatggtatcccaattgtcagcaaccaggttcaacattctattgttgacatgcgt 245 Query: 440 ccgcagaaaaagatggcagagctttgcgagcttaccggagtcaagcttatcacgtacggc 499 |||||| || |||||||| |||||| ||||||| ||||| || ||||| ||||| ||| Sbjct: 246 ccgcagcgaagaatggcagaactttgccagcttactggagtaaaacttataacgtatggc 305 Query: 500 acggtgatgggtggcctattgtccgagaagttcctcgacaccaacatcaacatacctttc 559 || || |||||||| || |||| |||||||| || |||||||| | |||||||| Sbjct: 306 acagttatgggtggtctgctgtctgagaagtttcttgacaccaatgtatctatacctttt 365 Query: 560 gccgcacctcctctgaacaccccatccctgcagaagtacaagaggatgatcgatgcttgg 619 || | |||||||||||| |||||||| |||||||||| ||| ||||| | ||||| ||| Sbjct: 366 gctggacctcctctgaataccccatctttgcagaagtataagcggatggtggatgcctgg 425 Query: 620 ggtggctggagcctgttccaggctctgctccagaccttgaagaaggtgtcgctgaaacac 679 |||||||||||||||||||||||| |||| ||||| |||||||| || || |||| || Sbjct: 426 ggtggctggagcctgttccaggctttgcttcagacgttgaagaaagtatcattgaagcat 485 Query: 680 ggcgtcccaatctcgaccgtcgccgtaagatacatactgaaccagacatcggtggcgggg 739 || || | || || || | || || ||||||||||||||||||||||| || ||||| Sbjct: 486 ggtgtttctatatcaactgctgctgtgagatacatactgaaccagacatctgttgcgggt 545 Query: 740 tcgatggtgggcgtgaggctggggctgtcggagcacatcagggacaccaacgc 792 || |||||||| ||||| ||||| || || || ||||| | ||||||||||| Sbjct: 546 tcaatggtgggtgtgagactgggactctctgaacacataaaagacaccaacgc 598 Score = 121 bits (61), Expect = 8e-24 Identities = 85/93 (91%) Strand = Plus / Plus Query: 174 ctgccctggacatgctgcagttccattggtgggactacgcaaatcccggatatctagatg 233 ||||| |||||||||||||||||||||||||||| || ||||| || |||||||| |||| Sbjct: 37 ctgccttggacatgctgcagttccattggtgggattatgcaaaccctggatatctggatg 96 Query: 234 cactaaagcacatcacagacctgaaggaggaag 266 ||||||| |||||||||||||| |||||||||| Sbjct: 97 cactaaaacacatcacagacctaaaggaggaag 129
>gb|AY105400.1| Zea mays PCO082439 mRNA sequence Length = 471 Score = 133 bits (67), Expect = 2e-27 Identities = 187/227 (82%) Strand = Plus / Plus Query: 566 cctcctctgaacaccccatccctgcagaagtacaagaggatgatcgatgcttggggtggc 625 |||||||| || ||||||||| ||||||| || ||||||||| | ||||||||||||||| Sbjct: 70 cctcctctaaataccccatccttgcagaaatataagaggatggttgatgcttggggtggc 129 Query: 626 tggagcctgttccaggctctgctccagaccttgaagaaggtgtcgctgaaacacggcgtc 685 ||||||||||||||| || |||| || ||||| ||||||||||| ||||||||||| || Sbjct: 130 tggagcctgttccagactttgcttcaaaccttaaagaaggtgtcactgaaacacggtgtt 189 Query: 686 ccaatctcgaccgtcgccgtaagatacatactgaaccagacatcggtggcggggtcgatg 745 | || || || || || || | |||||||||||||||||| || || || || || ||| Sbjct: 190 actatttcaacggttgctgtgaaatacatactgaaccagacgtctgttgcaggttccatg 249 Query: 746 gtgggcgtgaggctggggctgtcggagcacatcagggacaccaacgc 792 || || ||||| |||| || || || ||||||| ||||||||||| Sbjct: 250 gtcggtgtgagattgggactctctgaacacatcaaagacaccaacgc 296
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 103 bits (52), Expect = 2e-18 Identities = 85/96 (88%) Strand = Plus / Plus Query: 319 tgaaggcaagataaagactgtggctctgacgaacttcgacacagagaggctgcaaataat 378 |||||| ||||||||||| || |||||||| |||||||| ||||| |||||||| ||||| Sbjct: 22349451 tgaaggtaagataaagacagtagctctgacaaacttcgatacagacaggctgcagataat 22349510 Query: 379 cctagaaaatggaatacctattgtcagcaaccaggt 414 ||||||||||| || || ||||||||||||||||| Sbjct: 22349511 tctagaaaatggtatcccaattgtcagcaaccaggt 22349546 Score = 87.7 bits (44), Expect = 1e-13 Identities = 101/120 (84%) Strand = Plus / Plus Query: 84 ggcttacaaagtgggtgccgccgccggttaagatgacaagaagctacgttgaggagaaca 143 |||| ||||||||||| || || |||||||| ||||| ||||| || |||||||| || | Sbjct: 22348685 ggctaacaaagtgggtaccacctccggttaaaatgaccagaagttatgttgaggataata 22348744 Query: 144 tcaacaggtcccggaagaggatggacgtcgctgccctggacatgctgcagttccattggt 203 | ||||| || || ||||| ||||| || ||||| |||||||||||||||||||||||| Sbjct: 22348745 ttaacagatctcgaaagagaatggatgtttctgccttggacatgctgcagttccattggt 22348804 Score = 75.8 bits (38), Expect = 4e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 201 ggtgggactacgcaaatcccggatatctagatgcactaaagcacatcacagacctgaagg 260 ||||||| || ||||| || |||||||| ||||||||||| |||||||||||||| |||| Sbjct: 22349269 ggtgggattatgcaaaccctggatatctggatgcactaaaacacatcacagacctaaagg 22349328 Query: 261 aggaag 266 |||||| Sbjct: 22349329 aggaag 22349334 Score = 73.8 bits (37), Expect = 2e-09 Identities = 49/53 (92%) Strand = Plus / Plus Query: 611 gatgcttggggtggctggagcctgttccaggctctgctccagaccttgaagaa 663 ||||| ||||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct: 22349996 gatgcctggggtggctggagcctgttccaggctttgcttcagacgttgaagaa 22350048 Score = 67.9 bits (34), Expect = 1e-07 Identities = 73/86 (84%) Strand = Plus / Plus Query: 409 ccaggttcaacattctattgtggatatgcgcccgcagaaaaagatggcagagctttgcga 468 ||||||||||||||||||||| || ||||| |||||| || |||||||| |||||| | Sbjct: 22349638 ccaggttcaacattctattgttgacatgcgtccgcagcgaagaatggcagaactttgcca 22349697 Query: 469 gcttaccggagtcaagcttatcacgt 494 |||||| ||||| || ||||| |||| Sbjct: 22349698 gcttactggagtaaaacttataacgt 22349723 Score = 46.1 bits (23), Expect = 0.36 Identities = 41/47 (87%) Strand = Plus / Plus Query: 551 atacctttcgccgcacctcctctgaacaccccatccctgcagaagta 597 |||||||| || | |||||||||||| |||||||| |||||||||| Sbjct: 22349855 ataccttttgctggacctcctctgaataccccatctttgcagaagta 22349901
>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1155_H10 Length = 140475 Score = 103 bits (52), Expect = 2e-18 Identities = 85/96 (88%) Strand = Plus / Plus Query: 319 tgaaggcaagataaagactgtggctctgacgaacttcgacacagagaggctgcaaataat 378 |||||| ||||||||||| || |||||||| |||||||| ||||| |||||||| ||||| Sbjct: 111459 tgaaggtaagataaagacagtagctctgacaaacttcgatacagacaggctgcagataat 111518 Query: 379 cctagaaaatggaatacctattgtcagcaaccaggt 414 ||||||||||| || || ||||||||||||||||| Sbjct: 111519 tctagaaaatggtatcccaattgtcagcaaccaggt 111554 Score = 87.7 bits (44), Expect = 1e-13 Identities = 101/120 (84%) Strand = Plus / Plus Query: 84 ggcttacaaagtgggtgccgccgccggttaagatgacaagaagctacgttgaggagaaca 143 |||| ||||||||||| || || |||||||| ||||| ||||| || |||||||| || | Sbjct: 110693 ggctaacaaagtgggtaccacctccggttaaaatgaccagaagttatgttgaggataata 110752 Query: 144 tcaacaggtcccggaagaggatggacgtcgctgccctggacatgctgcagttccattggt 203 | ||||| || || ||||| ||||| || ||||| |||||||||||||||||||||||| Sbjct: 110753 ttaacagatctcgaaagagaatggatgtttctgccttggacatgctgcagttccattggt 110812 Score = 75.8 bits (38), Expect = 4e-10 Identities = 59/66 (89%) Strand = Plus / Plus Query: 201 ggtgggactacgcaaatcccggatatctagatgcactaaagcacatcacagacctgaagg 260 ||||||| || ||||| || |||||||| ||||||||||| |||||||||||||| |||| Sbjct: 111277 ggtgggattatgcaaaccctggatatctggatgcactaaaacacatcacagacctaaagg 111336 Query: 261 aggaag 266 |||||| Sbjct: 111337 aggaag 111342 Score = 73.8 bits (37), Expect = 2e-09 Identities = 49/53 (92%) Strand = Plus / Plus Query: 611 gatgcttggggtggctggagcctgttccaggctctgctccagaccttgaagaa 663 ||||| ||||||||||||||||||||||||||| |||| ||||| |||||||| Sbjct: 112004 gatgcctggggtggctggagcctgttccaggctttgcttcagacgttgaagaa 112056 Score = 67.9 bits (34), Expect = 1e-07 Identities = 73/86 (84%) Strand = Plus / Plus Query: 409 ccaggttcaacattctattgtggatatgcgcccgcagaaaaagatggcagagctttgcga 468 ||||||||||||||||||||| || ||||| |||||| || |||||||| |||||| | Sbjct: 111646 ccaggttcaacattctattgttgacatgcgtccgcagcgaagaatggcagaactttgcca 111705 Query: 469 gcttaccggagtcaagcttatcacgt 494 |||||| ||||| || ||||| |||| Sbjct: 111706 gcttactggagtaaaacttataacgt 111731 Score = 46.1 bits (23), Expect = 0.36 Identities = 41/47 (87%) Strand = Plus / Plus Query: 551 atacctttcgccgcacctcctctgaacaccccatccctgcagaagta 597 |||||||| || | |||||||||||| |||||||| |||||||||| Sbjct: 111863 ataccttttgctggacctcctctgaataccccatctttgcagaagta 111909
>gb|BT014157.1| Lycopersicon esculentum clone 133277F, mRNA sequence Length = 1374 Score = 77.8 bits (39), Expect = 1e-10 Identities = 186/235 (79%) Strand = Plus / Plus Query: 399 ttgtcagcaaccaggttcaacattctattgtggatatgcgcccgcagaaaaagatggcag 458 |||| ||||| ||||| |||||||| ||||| || ||||| || || | || ||||| | Sbjct: 703 ttgttagcaatcaggtacaacattcaattgttgacatgcgtcctcaacagaaaatggctg 762 Query: 459 agctttgcgagcttaccggagtcaagcttatcacgtacggcacggtgatgggtggcctat 518 ||||||| ||||||| |||||||| ||||| ||||| || || || ||||| || ||| Sbjct: 763 agctttgtcagcttacaggagtcaaacttataacgtatggaacagtaatgggagggttat 822 Query: 519 tgtccgagaagttcctcgacaccaacatcaacatacctttcgccgcacctcctctgaaca 578 | || || ||||||||||| |||||| | | |||||||| || | ||| | |||||| Sbjct: 823 tatctgaaaagttcctcgataccaacttaacgataccttttgctggccctgcattgaaca 882 Query: 579 ccccatccctgcagaagtacaagaggatgatcgatgcttggggtggctggagcct 633 | || || || ||||||||||| |||||| | ||||||||||| || |||||||| Sbjct: 883 ctccttcactacagaagtacaaaaggatggttgatgcttggggagggtggagcct 937 Score = 60.0 bits (30), Expect = 2e-05 Identities = 75/90 (83%) Strand = Plus / Plus Query: 160 gaggatggacgtcgctgccctggacatgctgcagttccattggtgggactacgcaaatcc 219 ||||||||| ||||| || |||||||||| || || ||||||||||||||| | ||||| Sbjct: 521 gaggatggatgtcgcagctttggacatgcttcaatttcattggtgggactactctaatcc 580 Query: 220 cggatatctagatgcactaaagcacatcac 249 ||||| |||| ||||| |||||| |||| Sbjct: 581 tggatacttagacgcacttaagcacctcac 610
>ref|NM_128327.3| Arabidopsis thaliana aldo-keto reductase/ oxidoreductase (AT2G27680) mRNA, complete cds Length = 1344 Score = 50.1 bits (25), Expect = 0.023 Identities = 61/73 (83%) Strand = Plus / Plus Query: 459 agctttgcgagcttaccggagtcaagcttatcacgtacggcacggtgatgggtggcctat 518 |||||||||||||||| || ||||| ||||| || || || || || |||||||| || | Sbjct: 727 agctttgcgagcttacaggggtcaaacttataacatatgggacagttatgggtggtctct 786 Query: 519 tgtccgagaagtt 531 |||| |||||||| Sbjct: 787 tgtcagagaagtt 799
>gb|AY078008.1| Arabidopsis thaliana At2g27680/F15K20.22 mRNA, complete cds Length = 1155 Score = 50.1 bits (25), Expect = 0.023 Identities = 61/73 (83%) Strand = Plus / Plus Query: 459 agctttgcgagcttaccggagtcaagcttatcacgtacggcacggtgatgggtggcctat 518 |||||||||||||||| || ||||| ||||| || || || || || |||||||| || | Sbjct: 704 agctttgcgagcttacaggggtcaaacttataacatatgggacagttatgggtggtctct 763 Query: 519 tgtccgagaagtt 531 |||| |||||||| Sbjct: 764 tgtcagagaagtt 776
>gb|AF385689.1|AF385689 Arabidopsis thaliana At2g27680/F15K20.22 mRNA, complete cds Length = 1261 Score = 50.1 bits (25), Expect = 0.023 Identities = 61/73 (83%) Strand = Plus / Plus Query: 459 agctttgcgagcttaccggagtcaagcttatcacgtacggcacggtgatgggtggcctat 518 |||||||||||||||| || ||||| ||||| || || || || || |||||||| || | Sbjct: 727 agctttgcgagcttacaggggtcaaacttataacatatgggacagttatgggtggtctct 786 Query: 519 tgtccgagaagtt 531 |||| |||||||| Sbjct: 787 tgtcagagaagtt 799
>gb|AF324984.2|AF324984 Arabidopsis thaliana At2g27680 (At2g27680/F15K20.22) mRNA, complete cds Length = 1261 Score = 50.1 bits (25), Expect = 0.023 Identities = 61/73 (83%) Strand = Plus / Plus Query: 459 agctttgcgagcttaccggagtcaagcttatcacgtacggcacggtgatgggtggcctat 518 |||||||||||||||| || ||||| ||||| || || || || || |||||||| || | Sbjct: 725 agctttgcgagcttacaggggtcaaacttataacatatgggacagttatgggtggtctct 784 Query: 519 tgtccgagaagtt 531 |||| |||||||| Sbjct: 785 tgtcagagaagtt 797
>emb|CR847537.9| Zebrafish DNA sequence from clone DKEYP-79B2 in linkage group 3, complete sequence Length = 144825 Score = 48.1 bits (24), Expect = 0.091 Identities = 24/24 (100%) Strand = Plus / Minus Query: 808 gctggacgaggaggacatgggcag 831 |||||||||||||||||||||||| Sbjct: 108790 gctggacgaggaggacatgggcag 108767
>ref|XM_001028031.1| Tetrahymena thermophila SB210 Elongation factor Tu GTP binding domain containing protein (TTHERM_00526200) mRNA, complete cds Length = 3084 Score = 46.1 bits (23), Expect = 0.36 Identities = 29/31 (93%) Strand = Plus / Plus Query: 643 tctgctccagaccttgaagaaggtgtcgctg 673 ||||||||||| |||||||||| |||||||| Sbjct: 2212 tctgctccagatcttgaagaagctgtcgctg 2242
>ref|XM_001159795.1| PREDICTED: Pan troglodytes coiled-coil domain containing 65, transcript variant 2 (CCDC65), mRNA Length = 6697 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Plus Query: 642 ctctgctccagaccttgaagaag 664 ||||||||||||||||||||||| Sbjct: 4461 ctctgctccagaccttgaagaag 4483
>ref|XM_001170580.1| PREDICTED: Pan troglodytes jouberin, transcript variant 2 (AHI1), mRNA Length = 6798 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 4792 tctgaaaattctgaactctgaag 4770
>ref|XM_001170641.1| PREDICTED: Pan troglodytes jouberin, transcript variant 5 (AHI1), mRNA Length = 5906 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 3900 tctgaaaattctgaactctgaag 3878
>ref|XM_001170621.1| PREDICTED: Pan troglodytes jouberin, transcript variant 4 (AHI1), mRNA Length = 6027 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 4021 tctgaaaattctgaactctgaag 3999
>ref|XM_001170604.1| PREDICTED: Pan troglodytes jouberin, transcript variant 3 (AHI1), mRNA Length = 5830 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 3824 tctgaaaattctgaactctgaag 3802
>ref|XM_527511.2| PREDICTED: Pan troglodytes jouberin, transcript variant 6 (AHI1), mRNA Length = 5885 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 3879 tctgaaaattctgaactctgaag 3857
>gb|AF077534.2| Caenorhabditis elegans cosmid K07D4, complete sequence Length = 44334 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Plus Query: 293 ctttttgttctgaaaattctgaa 315 ||||||||||||||||||||||| Sbjct: 36539 ctttttgttctgaaaattctgaa 36561
>gb|AC108409.8| Mus musculus chromosome 19, clone RP23-84G7, complete sequence Length = 270854 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 178 cctggacatgctgcagttccatt 200 ||||||||||||||||||||||| Sbjct: 87509 cctggacatgctgcagttccatt 87487
>dbj|AK128473.1| Homo sapiens cDNA FLJ46617 fis, clone TLIVE2007000 Length = 2189 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 1932 tctgaaaattctgaactctgaag 1910
>dbj|AK092262.1| Homo sapiens cDNA FLJ34943 fis, clone NT2RP7007580 Length = 4150 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 3893 tctgaaaattctgaactctgaag 3871
>dbj|AK024085.1| Homo sapiens cDNA FLJ14023 fis, clone HEMBA1003645, weakly similar to TIPD PROTEIN Length = 2922 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 2263 tctgaaaattctgaactctgaag 2241
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Plus Query: 790 cgcgatcctgtcgctgctgctgg 812 ||||||||||||||||||||||| Sbjct: 29551 cgcgatcctgtcgctgctgctgg 29573
>gb|DQ090887.1| Homo sapiens clone DKFZp686J1653 AHI1 (AHI1) mRNA, complete cds Length = 4278 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 4021 tctgaaaattctgaactctgaag 3999
>dbj|AB209018.1| Homo sapiens mRNA for FK506 binding protein precursor variant protein Length = 4977 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 642 ctctgctccagaccttgaagaag 664 ||||||||||||||||||||||| Sbjct: 2233 ctctgctccagaccttgaagaag 2211
>emb|AL023693.25|HS32B1 Human DNA sequence from clone RP1-32B1 on chromosome 6q22.33-23.3 Contains the MYB gene for v-myb myeloblastosis viral oncogene homolog (avian), 2 novel genes, the 3' end of a novel protein and a CpG island, complete sequence Length = 188287 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Plus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 172867 tctgaaaattctgaactctgaag 172889
>gb|BC015019.1| Homo sapiens cDNA clone IMAGE:3908210 Length = 2354 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 2078 tctgaaaattctgaactctgaag 2056
>gb|BC050607.1| Homo sapiens Abelson helper integration site 1, mRNA (cDNA clone IMAGE:6527938), containing frame-shift errors Length = 2325 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 2042 tctgaaaattctgaactctgaag 2020
>emb|AL136797.1|HSM801765 Homo sapiens mRNA; cDNA DKFZp434N031 (from clone DKFZp434N031) Length = 5277 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 3701 tctgaaaattctgaactctgaag 3679
>emb|AJ606362.1| Homo sapiens mRNA for AHI1 protein, splice variant 3 Length = 5476 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 3900 tctgaaaattctgaactctgaag 3878
>ref|NM_017651.3| Homo sapiens Abelson helper integration site 1 (AHI1), mRNA emb|AJ459824.1|HSA459824 Homo sapiens mRNA for AHI1 protein, splice variant 1 Length = 5538 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 3962 tctgaaaattctgaactctgaag 3940
>gb|BC039559.1| Homo sapiens Abelson helper integration site 1, mRNA (cDNA clone IMAGE:4518666), with apparent retained intron Length = 1739 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Minus Query: 301 tctgaaaattctgaactctgaag 323 ||||||||||||||||||||||| Sbjct: 162 tctgaaaattctgaactctgaag 140
>gb|AC073610.17| Homo sapiens 12 BAC RP11-302B13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104593 Score = 46.1 bits (23), Expect = 0.36 Identities = 23/23 (100%) Strand = Plus / Plus Query: 642 ctctgctccagaccttgaagaag 664 ||||||||||||||||||||||| Sbjct: 42316 ctctgctccagaccttgaagaag 42338
>emb|CR759961.20| Rat DNA sequence from clone RP32-320L10, complete sequence Length = 144666 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1024 gagacagatggacagagaggca 1045 |||||||||||||||||||||| Sbjct: 34456 gagacagatggacagagaggca 34477
>emb|CT962509.5| M.truncatula DNA sequence from clone MTH2-76F8 on chromosome 3, complete sequence Length = 112284 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1153 tggcatgataatatattttaat 1174 |||||||||||||||||||||| Sbjct: 3606 tggcatgataatatattttaat 3627
>gb|DQ356307.1| Koompassia malaccensis clone Kma026 microsatellite sequence Length = 515 Score = 44.1 bits (22), Expect = 1.4 Identities = 61/74 (82%) Strand = Plus / Minus Query: 410 caggttcaacattctattgtggatatgcgcccgcagaaaaagatggcagagctttgcgag 469 ||||| |||||||| ||||| || ||||| || || |||| |||||||||||||| || Sbjct: 310 caggtgcaacattcaattgttgacatgcgtccccaacaaaaaatggcagagctttgtcag 251 Query: 470 cttaccggagtcaa 483 || || |||||||| Sbjct: 250 ctaactggagtcaa 237
>ref|XM_001077667.1| PREDICTED: Rattus norvegicus similar to CREBBP/EP300 inhibitory protein 1 (predicted) (RGD1562702_predicted), mRNA Length = 1768 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 160 agatggcagagctttgcgagct 181
>ref|XM_575227.2| PREDICTED: Rattus norvegicus similar to CREBBP/EP300 inhibitory protein 1 (predicted) (RGD1562702_predicted), mRNA Length = 1768 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 160 agatggcagagctttgcgagct 181
>gb|AC114663.8| Mus musculus chromosome 1, clone RP24-172O22, complete sequence Length = 167652 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 301 tctgaaaattctgaactctgaa 322 |||||||||||||||||||||| Sbjct: 119611 tctgaaaattctgaactctgaa 119632
>gb|AC158967.5| Mus musculus chromosome 1, clone RP23-39N17, complete sequence Length = 244130 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 301 tctgaaaattctgaactctgaa 322 |||||||||||||||||||||| Sbjct: 211473 tctgaaaattctgaactctgaa 211494
>gb|BC010712.1| Mus musculus cDNA clone MGC:6836 IMAGE:2649456, complete cds Length = 1001 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 85 agatggcagagctttgcgagct 106
>gb|BC069897.1| Mus musculus cDNA clone MGC:78123 IMAGE:6486387, complete cds Length = 940 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 23 agatggcagagctttgcgagct 44
>gb|BC021345.1| Mus musculus FK506 binding protein 11, mRNA (cDNA clone IMAGE:4187191), complete cds Length = 2414 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Minus Query: 639 aggctctgctccagaccttgaagaag 664 ||||||||||||||||||||| |||| Sbjct: 1224 aggctctgctccagaccttgaggaag 1199
>gb|BC022900.1| Mus musculus FK506 binding protein 11, mRNA (cDNA clone MGC:25423 IMAGE:3590440), complete cds Length = 1429 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Minus Query: 639 aggctctgctccagaccttgaagaag 664 ||||||||||||||||||||| |||| Sbjct: 643 aggctctgctccagaccttgaggaag 618
>dbj|AK148555.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120402M20 product:CREBBP/EP300 inhibitory protein 1, full insert sequence Length = 1628 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 41 agatggcagagctttgcgagct 62
>dbj|AK169604.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430001N03 product:CREBBP/EP300 inhibitory protein 1, full insert sequence Length = 976 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 74 agatggcagagctttgcgagct 95
>dbj|AK078409.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720429F12 product:open reading frame 12, full insert sequence Length = 1630 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 46 agatggcagagctttgcgagct 67
>dbj|AK078402.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720416L24 product:open reading frame 12, full insert sequence Length = 1400 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 46 agatggcagagctttgcgagct 67
>dbj|AK077783.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830453H10 product:open reading frame 12, full insert sequence Length = 1666 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 80 agatggcagagctttgcgagct 101
>gb|AF509968.1| Mus musculus E1A-like inhibitor of differentiation mRNA, complete cds Length = 673 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 38 agatggcagagctttgcgagct 59
>ref|NM_025613.1| Mus musculus EP300 interacting inhibitor of differentiation 1 (Eid1), mRNA dbj|AK002559.1| Mus musculus adult male kidney cDNA, RIKEN full-length enriched library, clone:0610011L16 product:similar to PNAS-22 [Homo sapiens], full insert sequence Length = 1690 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 106 agatggcagagctttgcgagct 127
>dbj|AK031771.1| Mus musculus 11 days embryo head cDNA, RIKEN full-length enriched library, clone:6230417E10 product:Rai-like protein RaLP homolog [Mus musculus], full insert sequence Length = 1990 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 305 agatggcagagctttgcgagct 284
>dbj|AK005258.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500016C02 product:CREBBP/EP300 inhibitory protein 1 (Cri1), mRNA, full insert sequence Length = 1655 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 70 agatggcagagctttgcgagct 91
>dbj|AK078826.1| Mus musculus 16 days embryo lung cDNA, RIKEN full-length enriched library, clone:8430432P18 product:open reading frame 12, full insert sequence Length = 1269 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 24 agatggcagagctttgcgagct 45
>dbj|AK014440.1| Mus musculus 18 days pregnant adult female placenta and extra embryonic tissue cDNA, RIKEN full-length enriched library, clone:3830417D19 product:open reading frame 12, full insert sequence Length = 1233 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 46 agatggcagagctttgcgagct 67
>dbj|AK017543.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730410K17 product:2610002K20RIK PROTEIN, full insert sequence Length = 1657 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 76 agatggcagagctttgcgagct 97
>dbj|AK011293.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2610002K20 product:open reading frame 12, full insert sequence Length = 994 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 92 agatggcagagctttgcgagct 113
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 98 gtgccgccgccggttaagatga 119 |||||||||||||||||||||| Sbjct: 232351 gtgccgccgccggttaagatga 232372
>emb|CR759941.1| Rat DNA sequence from clone RP32-551O16 on chromosome Y, complete sequence Length = 174940 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1024 gagacagatggacagagaggca 1045 |||||||||||||||||||||| Sbjct: 58513 gagacagatggacagagaggca 58492
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 823 catgggcagcatcgccgaggcg 844 |||||||||||||||||||||| Sbjct: 519302 catgggcagcatcgccgaggcg 519323
>ref|NM_001013105.1| Rattus norvegicus FK506 binding protein 11 (Fkbp11), mRNA gb|BC084709.1| Rattus norvegicus FK506 binding protein 11, mRNA (cDNA clone MGC:105524 IMAGE:7301886), complete cds Length = 1325 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Minus Query: 639 aggctctgctccagaccttgaagaag 664 ||||||||||||||||||||| |||| Sbjct: 645 aggctctgctccagaccttgaggaag 620
>gb|BC060643.1| Mus musculus SHC (Src homology 2 domain containing) family, member 4, mRNA (cDNA clone IMAGE:6850749) Length = 3707 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Minus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 434 agatggcagagctttgcgagct 413
>emb|AL929166.7| Mouse DNA sequence from clone RP23-323D9 on chromosome 2, complete sequence Length = 130808 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 93529 agatggcagagctttgcgagct 93550
>emb|AL845156.5| Mouse DNA sequence from clone RP23-340F21 on chromosome 2, complete sequence Length = 118716 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 257 aaggaggaagtgagaataaatt 278 |||||||||||||||||||||| Sbjct: 19392 aaggaggaagtgagaataaatt 19413
>emb|AL357453.1|IROEST106 Mus musculus EST from clone 555961, full insert Length = 1687 Score = 44.1 bits (22), Expect = 1.4 Identities = 22/22 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagct 471 |||||||||||||||||||||| Sbjct: 66 agatggcagagctttgcgagct 87
>gb|AC156543.10| Mus musculus chromosome 15, clone RP23-220F2, complete sequence Length = 199715 Score = 44.1 bits (22), Expect = 1.4 Identities = 25/26 (96%) Strand = Plus / Plus Query: 639 aggctctgctccagaccttgaagaag 664 ||||||||||||||||||||| |||| Sbjct: 126188 aggctctgctccagaccttgaggaag 126213
>gb|CP000458.1| Burkholderia cenocepacia HI2424 chromosome 1, complete genome Length = 3483902 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 824 atgggcagcatcgccgaggcg 844 ||||||||||||||||||||| Sbjct: 3237473 atgggcagcatcgccgaggcg 3237493
>ref|XR_022297.1| PREDICTED: Pan troglodytes similar to SOX-11 (LOC749812), mRNA Length = 1789 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 801 cgctgctgctggacgaggagg 821 ||||||||||||||||||||| Sbjct: 904 cgctgctgctggacgaggagg 884
>ref|XM_001128542.1| PREDICTED: Homo sapiens SRY (sex determining region Y)-box 11 (SOX11), mRNA Length = 651 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 801 cgctgctgctggacgaggagg 821 ||||||||||||||||||||| Sbjct: 367 cgctgctgctggacgaggagg 347
>gb|CP000312.1| Clostridium perfringens SM101, complete genome Length = 2897393 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1384 taatgaatgaagaaaataaaa 1404 ||||||||||||||||||||| Sbjct: 1494019 taatgaatgaagaaaataaaa 1493999
>ref|XM_001098988.1| PREDICTED: Macaca mulatta similar to Transcription factor SOX-11 (SOX11), mRNA Length = 9313 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 801 cgctgctgctggacgaggagg 821 ||||||||||||||||||||| Sbjct: 1117 cgctgctgctggacgaggagg 1097
>gb|CP000378.1| Burkholderia cenocepacia AU 1054 chromosome 1, complete sequence Length = 3294563 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 824 atgggcagcatcgccgaggcg 844 ||||||||||||||||||||| Sbjct: 2554233 atgggcagcatcgccgaggcg 2554253
>emb|CT573074.1| Kuenenia stuttgartiensis genome fragment KUST_B (2 of 5) Length = 132284 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 930 tgtgctcccacgacgatgtat 950 ||||||||||||||||||||| Sbjct: 122051 tgtgctcccacgacgatgtat 122031
>gb|DQ397852.1| Cenarchaeum symbiosum clone C15D08, complete sequence Length = 38754 Score = 42.1 bits (21), Expect = 5.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 tgctgcagttccattggtgggacta 210 ||||||||||||| ||||||||||| Sbjct: 27018 tgctgcagttccactggtgggacta 27042
>gb|DQ397850.1| Cenarchaeum symbiosum clone C09B07, complete sequence Length = 40824 Score = 42.1 bits (21), Expect = 5.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 186 tgctgcagttccattggtgggacta 210 ||||||||||||| ||||||||||| Sbjct: 16462 tgctgcagttccactggtgggacta 16438
>gb|DQ397849.1| Cenarchaeum symbiosum clone C08E01, complete sequence Length = 37303 Score = 42.1 bits (21), Expect = 5.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 tgctgcagttccattggtgggacta 210 ||||||||||||| ||||||||||| Sbjct: 35259 tgctgcagttccactggtgggacta 35283
>gb|DQ397600.1| Cenarchaeum symbiosum clone C07B08, complete sequence Length = 41295 Score = 42.1 bits (21), Expect = 5.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 tgctgcagttccattggtgggacta 210 ||||||||||||| ||||||||||| Sbjct: 12604 tgctgcagttccactggtgggacta 12628
>gb|AC167164.6| Mus musculus chromosome 7, clone RP24-276M8, complete sequence Length = 171048 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1011 ttgcagaggcatggagacaga 1031 ||||||||||||||||||||| Sbjct: 148443 ttgcagaggcatggagacaga 148463
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 824 atgggcagcatcgccgaggcg 844 ||||||||||||||||||||| Sbjct: 3433906 atgggcagcatcgccgaggcg 3433926
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 799 gtcgctgctgctggacgagga 819 ||||||||||||||||||||| Sbjct: 2169572 gtcgctgctgctggacgagga 2169552
>gb|AC120863.9| Mus musculus chromosome 7, clone RP23-84H3, complete sequence Length = 241742 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1011 ttgcagaggcatggagacaga 1031 ||||||||||||||||||||| Sbjct: 160812 ttgcagaggcatggagacaga 160792
>gb|AC120408.7| Mus musculus chromosome 5, clone RP24-433N14, complete sequence Length = 178077 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1027 acagatggacagagaggcatg 1047 ||||||||||||||||||||| Sbjct: 162181 acagatggacagagaggcatg 162201
>ref|NM_003108.3| Homo sapiens SRY (sex determining region Y)-box 11 (SOX11), mRNA Length = 8737 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 801 cgctgctgctggacgaggagg 821 ||||||||||||||||||||| Sbjct: 1097 cgctgctgctggacgaggagg 1077
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 875 atcggggactgcggcgacgag 895 ||||||||||||||||||||| Sbjct: 3217657 atcggggactgcggcgacgag 3217637
>dbj|AB178994.1| Macaca fascicularis testis cDNA clone: QtsA-11117, similar to human Abelson helper integration site (AHI1), mRNA, RefSeq: NM_017651.3 Length = 2208 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 tgaaaattctgaactctgaag 323 ||||||||||||||||||||| Sbjct: 1926 tgaaaattctgaactctgaag 1906
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 802 gctgctgctggacgaggagga 822 ||||||||||||||||||||| Sbjct: 2558812 gctgctgctggacgaggagga 2558792
>dbj|AK012453.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700059A20 product:open reading frame 12, full insert sequence Length = 1480 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 450 agatggcagagctttgcgagc 470 ||||||||||||||||||||| Sbjct: 90 agatggcagagctttgcgagc 110
>gb|AC005824.3| Arabidopsis thaliana chromosome 2 clone F15K20 map B68, complete sequence Length = 118196 Score = 42.1 bits (21), Expect = 5.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 459 agctttgcgagcttaccggagtcaagcttatcacgta 495 |||||||||||||||| || ||||| ||||| ||||| Sbjct: 74979 agctttgcgagcttacaggggtcaaacttataacgta 75015
>gb|AC091729.4| Homo sapiens BAC clone RP13-580H13 from 7, complete sequence Length = 104285 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 631 cctgttccaggctctgctcca 651 ||||||||||||||||||||| Sbjct: 53998 cctgttccaggctctgctcca 54018
>emb|AL596247.22| Human DNA sequence from clone RP11-417O11 on chromosome 10 Contains the 5' end of the CAMK2G gene for calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma, the PLAU gene for plasminogen activator urokinase, three novel genes (FLJ35198), the 5' end of the VCL gene for vinculin and three CpG islands, complete sequence Length = 228098 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 407 aaccaggttcaacattctatt 427 ||||||||||||||||||||| Sbjct: 110770 aaccaggttcaacattctatt 110750
>emb|AL359373.21| Human DNA sequence from clone RP11-5L19 on chromosome 1 Contains the 5' end of the gene for a novel protein (FLJ31862, FLJ22091, FLJ10597) and two CpG islands, complete sequence Length = 117638 Score = 42.1 bits (21), Expect = 5.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 639 aggctctgctccagaccttgaagaa 663 ||||||| ||||||||||||||||| Sbjct: 115033 aggctcttctccagaccttgaagaa 115057
>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence Length = 168843 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 tgttccaggctctgctccaga 653 ||||||||||||||||||||| Sbjct: 16026 tgttccaggctctgctccaga 16006
>emb|AL356131.12| Human DNA sequence from clone RP1-91N13 on chromosome 6 Contains a proteasome subunit alpha type 4 (PROS29) pseudogene, complete sequence Length = 170095 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1385 aatgaatgaagaaaataaaaa 1405 ||||||||||||||||||||| Sbjct: 130763 aatgaatgaagaaaataaaaa 130783
>emb|AL353596.13| Human DNA sequence from clone CTA-212D2 on chromosome 6 Contains the 5' end of the HBS1L gene for HBS1-like (S. cerevisiae) (KIAA1038, EFRS) and a novel gene, complete sequence Length = 108329 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 960 cttaacaaatgaaatgagatt 980 ||||||||||||||||||||| Sbjct: 4929 cttaacaaatgaaatgagatt 4949
>gb|AC110911.18| Mus musculus chromosome 7, clone RP24-357A15, complete sequence Length = 146978 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1011 ttgcagaggcatggagacaga 1031 ||||||||||||||||||||| Sbjct: 134860 ttgcagaggcatggagacaga 134880
>emb|AL035688.8|HS173A13 Human DNA sequence from clone RP1-173A13 on chromosome 6 Contains a proteasome component C9 (macropain subunit C9) (PSMA4) pseudogene, complete sequence Length = 148870 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1385 aatgaatgaagaaaataaaaa 1405 ||||||||||||||||||||| Sbjct: 3628 aatgaatgaagaaaataaaaa 3608
>emb|AL031073.1|HS142F18 Human DNA sequence from clone RP1-142F18 on chromosome Xq26.3-27.2 Contains the MAGEE1 gene for melanoma antigen, family E 1, a melanoma antigen, family E 1(MAGEE1) pseudogene, and a CpG island, complete sequence Length = 141672 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 gaaggaggaagtgagaataaa 276 ||||||||||||||||||||| Sbjct: 121341 gaaggaggaagtgagaataaa 121361
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 5.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 789 acgcgatcctgtcgctgctgctgga 813 |||||| |||||||||||||||||| Sbjct: 1611699 acgcgaacctgtcgctgctgctgga 1611675
>emb|BX957239.7| Zebrafish DNA sequence from clone DKEY-173N20 in linkage group 19, complete sequence Length = 182432 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1391 tgaagaaaataaaaactgttt 1411 ||||||||||||||||||||| Sbjct: 53767 tgaagaaaataaaaactgttt 53787
>gb|AC107218.4| Homo sapiens BAC clone RP11-561A13 from 2, complete sequence Length = 164620 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1359 aaaaatggtgttttcaaggta 1379 ||||||||||||||||||||| Sbjct: 87080 aaaaatggtgttttcaaggta 87060
>gb|AC140542.3| Homo sapiens chromosome 16 clone XXfos-89147F6, complete sequence Length = 37849 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1025 agacagatggacagagaggca 1045 ||||||||||||||||||||| Sbjct: 6664 agacagatggacagagaggca 6684
>gb|AC137775.2| Homo sapiens chromosome 16 clone LA16c-466B3, complete sequence Length = 35828 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1025 agacagatggacagagaggca 1045 ||||||||||||||||||||| Sbjct: 11214 agacagatggacagagaggca 11234
>gb|AC108025.4| Homo sapiens BAC clone RP11-38F5 from 2, complete sequence Length = 96880 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 801 cgctgctgctggacgaggagg 821 ||||||||||||||||||||| Sbjct: 81981 cgctgctgctggacgaggagg 81961
>gb|AC007857.2|AC007857 Homo sapiens chromosome 16 clone RPCI-11_523L20, complete sequence Length = 147421 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1025 agacagatggacagagaggca 1045 ||||||||||||||||||||| Sbjct: 22250 agacagatggacagagaggca 22230
>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence Length = 185588 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 633 tgttccaggctctgctccaga 653 ||||||||||||||||||||| Sbjct: 121382 tgttccaggctctgctccaga 121362
>gb|AC105298.21| Mus musculus strain C57BL/6J chromosome 5 clone rp23-224j9, complete sequence Length = 258789 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1027 acagatggacagagaggcatg 1047 ||||||||||||||||||||| Sbjct: 148043 acagatggacagagaggcatg 148023
>gb|U23752.1|HSU23752 Human SOX-11 mRNA, complete cds Length = 1998 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 801 cgctgctgctggacgaggagg 821 ||||||||||||||||||||| Sbjct: 1117 cgctgctgctggacgaggagg 1097
>gb|AC092818.4| Homo sapiens chromosome 8, clone RP11-419C23, complete sequence Length = 175100 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 633 tgttccaggctctgctccaga 653 ||||||||||||||||||||| Sbjct: 10821 tgttccaggctctgctccaga 10841
>dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 8/19, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 633 tgttccaggctctgctccaga 653 ||||||||||||||||||||| Sbjct: 14092 tgttccaggctctgctccaga 14112
>dbj|AB028641.1| Homo sapiens mRNA for SOX11, complete cds Length = 8743 Score = 42.1 bits (21), Expect = 5.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 801 cgctgctgctggacgaggagg 821 ||||||||||||||||||||| Sbjct: 1097 cgctgctgctggacgaggagg 1077 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 276,440,268 Number of extensions: 16193586 Number of successful extensions: 351212 Number of sequences better than 10.0: 113 Number of HSP's gapped: 351212 Number of HSP's successfully gapped: 137 Length of query: 1482 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1459 Effective length of database: 18,503,978,556 Effective search space: 26997304713204 Effective search space used: 26997304713204 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)