ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf159m05 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os06g43590:12006.t04049:unspliced-genomic charged multivesicular body protein 1b, putative, expressed| Length = 3167 Score = 283 bits (612), Expect(3) = 2e-93 Identities = 123/128 (96%), Positives = 126/128 (98%) Frame = +1 / +2 Query: 259 GNVDGARIYAENAIRKRTEHMNYLRLASRLDAVVSRLDTQAKMQAIGKSMGNIVKSLDSS 438 GN+DGARIYAENAIRKRTEHMNYLRLASRLDAVV+RLDTQAKMQ IGKSM NIVKSLDS+ Sbjct: 314 GNMDGARIYAENAIRKRTEHMNYLRLASRLDAVVARLDTQAKMQVIGKSMANIVKSLDSA 493 Query: 439 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGL 618 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGL Sbjct: 494 LATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQVADDYGL 673 Query: 619 EVSVGLPQ 642 EVSVGLPQ Sbjct: 674 EVSVGLPQ 697 Score = 72.5 bits (152), Expect(3) = 2e-93 Identities = 30/32 (93%), Positives = 31/32 (96%) Frame = +1 / +2 Query: 112 AAAAMGNPEKLMAQIFDLKFTSKSLQRQARKC 207 +AAAMGNPEKLM QIFDLKFTSKSLQRQARKC Sbjct: 167 SAAAMGNPEKLMTQIFDLKFTSKSLQRQARKC 262 Score = 27.2 bits (53), Expect(3) = 2e-93 Identities = 12/13 (92%), Positives = 13/13 (100%) Frame = +1 / +2 Query: 700 LTRRLAELKARG* 738 L+RRLAELKARG* Sbjct: 758 LSRRLAELKARG* 796 Score = 177 bits (382), Expect(3) = 3e-66 Identities = 77/89 (86%), Positives = 77/89 (86%) Frame = -1 / -3 Query: 638 GRPTETSRP*SSATCCMRELTSVSGVEREVEPAMAPSMNSAWTSMLTNWRSKLSMVSDIF 459 G PTETSRP*SSATCCMR LTSVSGVE EVEPAMAPSMNSAWTSMLTNWRSKLSMVSDIF Sbjct: 693 GNPTETSRP*SSATCCMRLLTSVSGVESEVEPAMAPSMNSAWTSMLTNWRSKLSMVSDIF 514 Query: 458 WRLPVAREESSDLTMLPMDFPMACILACV 372 R PVA ESSDLTML MD PM CI A V Sbjct: 513 CRFPVASAESSDLTMLAMDLPMTCIFAWV 427 Score = 67.0 bits (140), Expect(3) = 3e-66 Identities = 28/31 (90%), Positives = 28/31 (90%) Frame = -1 / -3 Query: 206 HLRACRCSDLEVNLRSKICAISFSGLPIAAA 114 HLRACRCSDLEVNLRSKI ISFSG PIAAA Sbjct: 261 HLRACRCSDLEVNLRSKIWVISFSGFPIAAA 169 Score = 46.9 bits (96), Expect(3) = 3e-66 Identities = 20/22 (90%), Positives = 20/22 (90%) Frame = -1 / -3 Query: 323 FMCSVRLRMAFSA*IRAPSTLP 258 FMCSVRLRMAFSA*IRAPS P Sbjct: 378 FMCSVRLRMAFSA*IRAPSMFP 313 Score = 89.0 bits (188), Expect(4) = 7e-29 Identities = 34/42 (80%), Positives = 37/42 (88%) Frame = +3 / +1 Query: 372 HAGQDAGHRKVHGQHRQVARLLPRHRQPPEDVRDHGQLRAPV 497 H G+DAGHR+VHGQHRQVARL RH +P EDVRDHGQLRAPV Sbjct: 427 HPGEDAGHRQVHGQHRQVARLRARHGEPAEDVRDHGQLRAPV 552 Score = 42.3 bits (86), Expect(4) = 7e-29 Identities = 18/18 (100%), Positives = 18/18 (100%) Frame = +3 / +1 Query: 156 LRPQVHLQVAAAAGAQVR 209 LRPQVHLQVAAAAGAQVR Sbjct: 211 LRPQVHLQVAAAAGAQVR 264 Score = 27.6 bits (54), Expect(4) = 7e-29 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = +3 / +1 Query: 297 HPQAHRAHE 323 HPQAHRAHE Sbjct: 352 HPQAHRAHE 378 Score = 24.0 bits (46), Expect(4) = 7e-29 Identities = 9/10 (90%), Positives = 9/10 (90%) Frame = +3 / +1 Query: 552 LPLHARDRGQ 581 L LHARDRGQ Sbjct: 607 LALHARDRGQ 636 Score = 48.3 bits (99), Expect(3) = 1e-15 Identities = 22/40 (55%), Positives = 22/40 (55%) Frame = -2 / -1 Query: 496 TGARSCPWXXXXXXXXXXXXXXRAT*RCCPWTFRWPASWP 377 TGARSCPW RAT*RC PWT R PAS P Sbjct: 551 TGARSCPWSRTSSAGSPWRARSRAT*RCWPWTCR*PASSP 432 Score = 38.2 bits (77), Expect(3) = 1e-15 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = -3 / -2 Query: 321 HVLGALADGVLGVDP 277 HVLGALADGVLGVDP Sbjct: 376 HVLGALADGVLGVDP 332 Score = 34.1 bits (68), Expect(3) = 1e-15 Identities = 13/13 (100%), Positives = 13/13 (100%) Frame = -3 / -2 Query: 534 ALHELGLDLHVDE 496 ALHELGLDLHVDE Sbjct: 589 ALHELGLDLHVDE 551 Score = 33.6 bits (67), Expect(2) = 0.46 Identities = 13/17 (76%), Positives = 14/17 (82%) Frame = -3 / -2 Query: 426 RLDDVAHGLSDGLHLGL 376 RLDDV HGL+D LHL L Sbjct: 481 RLDDVGHGLADDLHLRL 431 Score = 24.4 bits (47), Expect(2) = 0.46 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -1 / -3 Query: 842 NNIYEAVRYEQPLT 801 N+IYE+ +YE PLT Sbjct: 2940 NSIYESNKYE*PLT 2899
>LOC_Os01g04710:12001.t00359:unspliced-genomic aspartic proteinase nepenthesin-1 precursor, putative, expressed| Length = 1986 Score = 33.1 bits (66), Expect = 3.1 Identities = 16/34 (47%), Positives = 17/34 (50%) Frame = +3 / +3 Query: 378 GQDAGHRKVHGQHRQVARLLPRHRQPPEDVRDHG 479 G D G R V G RQ LLPR R+ P HG Sbjct: 585 GGDTGPRGVRGWARQRRVLLPRRRRQPRAAAVHG 686
>LOC_Os04g31350:12004.t02818:unspliced-genomic expressed protein| Length = 1161 Score = 32.7 bits (65), Expect = 4.3 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +3 / +2 Query: 438 PRHRQPPEDVRDHGQLRAP 494 PRHR P+D R HG+ R P Sbjct: 362 PRHRHQPQDPRHHGRRRRP 418
>LOC_Os11g33190:12011.t02913:unspliced-genomic F-box domain containing protein, expressed| Length = 2897 Score = 32.2 bits (64), Expect = 5.9 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +3 / +2 Query: 390 GHRKVHGQHRQVARLLPRHRQP 455 G R VHG HRQ A LLP+ +P Sbjct: 2075 GERDVHGGHRQPAPLLPQPPRP 2140
>LOC_Os03g12790:12003.t01076:unspliced-genomic antiporter/ drug transporter/ transporter, putative, expressed| Length = 2535 Score = 32.2 bits (64), Expect = 5.9 Identities = 9/12 (75%), Positives = 9/12 (75%) Frame = -2 / -1 Query: 412 CPWTFRWPASWP 377 CPWT RW A WP Sbjct: 1281 CPWTPRWRAGWP 1246
>LOC_Os03g10940:12003.t00895:unspliced-genomic casein kinase II subunit alpha-2, putative, expressed| Length = 4681 Score = 32.2 bits (64), Expect = 5.9 Identities = 14/31 (45%), Positives = 16/31 (51%) Frame = +3 / +1 Query: 387 AGHRKVHGQHRQVARLLPRHRQPPEDVRDHG 479 AGHR H H + L PRHR+ P R G Sbjct: 97 AGHRHRHRYHERHTPLPPRHRRLPRHRRRRG 189
>LOC_Os11g33220:12011.t02916:unspliced-genomic F-box domain containing protein| Length = 1755 Score = 31.8 bits (63), Expect = 8.1 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 / +3 Query: 405 HGQHRQVARLLPRHRQPPEDVRDHGQLR 488 HG HRQ A LLP+ +P + HG R Sbjct: 1200 HGGHRQPAPLLPQPPRPRDPPHPHGAAR 1283
>LOC_Os10g42299:12010.t03458:unspliced-genomic mitochondrial carnitine/acylcarnitine carrier-like protein, putative,| expressed Length = 5352 Score = 31.8 bits (63), Expect = 8.1 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 / -3 Query: 375 AGQDAGHRKVHGQHRQVARLLPRHRQP 455 AG+ R VH +H +V R LPR R+P Sbjct: 4900 AGEVLLDRLVHAEHERVPRHLPRQRRP 4820
>LOC_Os07g04810:12007.t00367:unspliced-genomic receptor-like kinase ARK1AS, putative, expressed| Length = 1632 Score = 31.8 bits (63), Expect = 8.1 Identities = 17/40 (42%), Positives = 18/40 (45%) Frame = +3 / +3 Query: 372 HAGQDAGHRKVHGQHRQVARLLPRHRQPPEDVRDHGQLRA 491 H G Q RQ RLL R R+ VR HGQ RA Sbjct: 576 HGGGGHHREDAPHQPRQAVRLLLRRRRARAGVRVHGQRRA 695 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 198,283,343 Number of extensions: 2271574 Number of successful extensions: 10327 Number of sequences better than 10.0: 9 Length of query: 331 Length of database: 55,613,886 Length adjustment: 50 Effective length of query: 281 Effective length of database: 52,799,986 Effective search space: 14836796066 Effective search space used: 14836796066 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
