ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf162b13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AK103881:Os01g0390900 74 1e-13
2AK121808:Os05g0161200 30 2.8
3AB042936:Os05g0161200 30 2.8
4AK120950:Os08g0430000 28 6.2
5AK066952:Os06g0298400 28 6.2
6AK106892:Os02g0694700 28 8.1
7AK066534:Os06g0251700 28 8.1

>AK103881:Os01g0390900 |
          Length = 199
 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 35/52 (67%), Positives = 40/52 (76%)
 Frame = +1

Query: 40  MSVPEAGQSAGRDEQEMDDYEQHQTRVLMALMQGLCAARYRKADNTPCLVDQ 195
           MS+PEAG+S     ++ DDYEQ Q RVLMALMQG CAARYRKADN PC + Q
Sbjct: 1   MSMPEAGRSERDGREQDDDYEQQQARVLMALMQGFCAARYRKADNIPCPIVQ 52



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>AK121808:Os05g0161200 |
          Length = 583

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 15/23 (65%), Positives = 15/23 (65%)
 Frame = +3

Query: 168 RQHPLPRRPGLTAPRPLFHHRFP 236
           RQHP PRRPGL  PR L   R P
Sbjct: 20  RQHPHPRRPGL-RPRRLHRLRLP 41



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>AB042936:Os05g0161200 |
          Length = 583

 Score = 29.6 bits (65), Expect = 2.8
 Identities = 15/23 (65%), Positives = 15/23 (65%)
 Frame = +3

Query: 168 RQHPLPRRPGLTAPRPLFHHRFP 236
           RQHP PRRPGL  PR L   R P
Sbjct: 20  RQHPHPRRPGL-RPRRLHRLRLP 41



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>AK120950:Os08g0430000 |
          Length = 1463

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
 Frame = -1

Query: 669  HLPLNSKTTCSSMANNSSRSLAPSNGKSYSRKPSRILAGMRQ-----WISLSDSNGVLTS 505
            H  +N  +   S+A+   R        + SR  SR  +G R      W S  +   V+ +
Sbjct: 1192 HANVNMSSARCSLASRQRRFPQHRASLNLSRAHSRSPSGSRSRSPHAWTSPRNRREVMVN 1251

Query: 504  DSNGFWRHS 478
             S+  WRHS
Sbjct: 1252 GSSSLWRHS 1260



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>AK066952:Os06g0298400 |
          Length = 860

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -1

Query: 645 TCSSMANN--SSRSLAPSNGKSYSRKPSRILAGMRQWISLSDSNGVLTSDSN 496
           T SS+ +N  SS +LAP+N   +SR+   I++   +  SLS   G  ++ ++
Sbjct: 633 TSSSVLDNTTSSSNLAPANSSLHSRESDNIISKEAKLASLSQPVGATSASAS 684



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>AK106892:Os02g0694700 |
          Length = 415

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = -2

Query: 389 CSTTQIPVPQKNGSCDLDQRILANLH-QETPTMLPTLDAAIQH*IASGDPIRWETVVEER 213
           C  TQ  +  K GS       +A L   +T    P   A ++  +  G+  RWE++V   
Sbjct: 276 CMETQCRIHVKEGS-------VARLTCPDTSCRRPLPPALLRGLLGDGEYARWESLVLRG 328

Query: 212 PWSR-QTWSTRQG 177
            W+R  TW T  G
Sbjct: 329 CWTRCPTWPTAPG 341



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>AK066534:Os06g0251700 |
          Length = 608

 Score = 28.1 bits (61), Expect = 8.1
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 621 SSRSLAPSNGKSYSRKPSRILA-GMRQWISLSDSNGVLTSDSNGFWRHSYL 472
           S  S  P+ GKS+S  PSR L+ G    +S    NG+L   S  F   S L
Sbjct: 363 SGSSRLPTEGKSFSNGPSRRLSLGGADNMSKLSPNGLLARRSPSFHSRSSL 413


  Database: orf_amino.fa.out
    Posted date:  Jul 26, 2007 11:37 AM
  Number of letters in database: 15,399,855
  Number of sequences in database:  40,041
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 40041
Number of Hits to DB: 24,497,117
Number of extensions: 572895
Number of successful extensions: 1485
Number of sequences better than 10.0: 7
Number of HSP's gapped: 1481
Number of HSP's successfully gapped: 7
Length of query: 283
Length of database: 15,399,855
Length adjustment: 99
Effective length of query: 184
Effective length of database: 11,435,796
Effective search space: 2104186464
Effective search space used: 2104186464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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