ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf155o08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 125 9e-25
2gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete se... 98 2e-16
3gb|AY919050.1| Lolium perenne clone LpSSR026 SSR marker sequence 64 3e-06
4gb|DQ128029.1| Triticum turgidum clone Td3-2, genomic sequence 62 1e-05
5gb|DQ399090.1| Lolium multiflorum clone lm27 microsatellite sequ... 58 2e-04
6gb|DQ128040.1| Triticum aestivum clone A4-4 Ty3/gypsy-like retro... 50 0.043
7gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare str... 50 0.043
8emb|BX927388.14| Zebrafish DNA sequence from clone CH211-160J14 ... 50 0.043
9gb|AC113339.1| Genomic sequence for Oryza sativa (japonica culti... 50 0.043
10dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.043
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.043
12dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic D... 50 0.043
13gb|AC146946.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.17
14dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.17
15gb|AC011233.6| Homo sapiens BAC clone RP11-105F19 from 2, comple... 48 0.17
16gb|AY204215.1| Hordeum vulgare subsp. spontaneum clone Ghs-L-4 T... 48 0.17
17gb|AC113395.2| Homo sapiens chromosome 5 clone RP11-418P19, comp... 46 0.67
18dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.67
19dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.67
20gb|AC091788.6| Homo sapiens BAC clone RP11-400A23 from 2, comple... 46 0.67
21gb|AC113377.2| Homo sapiens chromosome 5 clone RP11-26N10, compl... 46 0.67
22emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 46 0.67
23gb|AC097626.9| Homo sapiens X BAC RP11-527B14 (Roswell Park Canc... 44 2.7
24gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete seq... 44 2.7
25emb|CR854851.12| Zebrafish DNA sequence from clone DKEY-98D7 in ... 44 2.7
26emb|BX293999.7| Mouse DNA sequence from clone RP24-213L10 on chr... 44 2.7
27emb|AL663053.12| Mouse DNA sequence from clone RP23-436M12 on ch... 44 2.7
28emb|AL604045.7| Mouse DNA sequence from clone RP23-418O11 on chr... 44 2.7 
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664
 Score =  125 bits (63), Expect = 9e-25
 Identities = 112/127 (88%), Gaps = 1/127 (0%)
 Strand = Plus / Minus

                                                                         
Query: 1581  tgactattgaaacccgtgggccgtgggtaaagagtacacgctatgcagagtcaaaactat 1640
             ||||||| ||||||||| ||  ||||||||||||||| | || | |||||||||||||||
Sbjct: 71617 tgactatcgaaacccgttggttgtgggtaaagagtaccc-ctctacagagtcaaaactat 71559

                                                                         
Query: 1641  tcgagtagccgcgtccacggtcaaggacgactggttgacacgtcaaatgtcggtctgagt 1700
             |||| |||||||||||| |||||||||||| ||||||||| ||||| |||||||||  ||
Sbjct: 71558 tcgattagccgcgtccatggtcaaggacgattggttgacatgtcaagtgtcggtcttcgt 71499

                    
Query: 1701  gtcggtc 1707
             |||||||
Sbjct: 71498 gtcggtc 71492



 Score = 48.1 bits (24), Expect = 0.17
 Identities = 52/60 (86%), Gaps = 1/60 (1%)
 Strand = Plus / Minus

                                                                         
Query: 1418  ggtataaatgtgatcccatgctattcgagggtgttgtcctccgcgtcttatggtttttcc 1477
             ||||||||| |||||||||||||||| | ||||| | ||||| |||||||| || |||||
Sbjct: 71777 ggtataaatttgatcccatgctattc-aaggtgtcggcctccccgtcttatagtatttcc 71719
to top
>gb|AY368673.1| Triticum turgidum HMW-glutenin locus, complete sequence
          Length = 285506

 Score = 97.6 bits (49), Expect = 2e-16
 Identities = 73/81 (90%)
 Strand = Plus / Plus

                                                                          
Query: 2396   atgtttacgagtacattcaaagtacttactggcatgtccctcgctattgtcttggccaga 2455
              |||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||
Sbjct: 265769 atgtttgcgagtacattcaaagtactcactggcttgtccctggctattgtcttggccaga 265828

                                   
Query: 2456   ttgcgtgtttggagaggagcg 2476
              || | ||  ||||||||||||
Sbjct: 265829 tttcttgcgtggagaggagcg 265849



 Score = 87.7 bits (44), Expect = 2e-13
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                                  
Query: 1918   aagccctttgtgtggtgtcgctcagacgtccgactgtggcatgcttgttatt 1969
              ||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265572 aagccctttatgtggtgtcgctcagacgcccgactgtggcatgcttgttatt 265623



 Score = 87.7 bits (44), Expect = 2e-13
 Identities = 50/52 (96%)
 Strand = Plus / Plus

                                                                  
Query: 2040   aagccctttatgtggtgtcgctcagacgcccgactatggcatgcatgttatt 2091
              ||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 265572 aagccctttatgtggtgtcgctcagacgcccgactgtggcatgcttgttatt 265623



 Score = 83.8 bits (42), Expect = 3e-12
 Identities = 42/42 (100%)
 Strand = Plus / Plus

                                                        
Query: 2040   aagccctttatgtggtgtcgctcagacgcccgactatggcat 2081
              ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265172 aagccctttatgtggtgtcgctcagacgcccgactatggcat 265213



 Score = 75.8 bits (38), Expect = 8e-10
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                        
Query: 2040   aagccctttatgtggtgtcgctcagacgcccgactatggcat 2081
              ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265272 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265313



 Score = 75.8 bits (38), Expect = 8e-10
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                        
Query: 2040   aagccctttatgtggtgtcgctcagacgcccgactatggcat 2081
              ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265372 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265413



 Score = 75.8 bits (38), Expect = 8e-10
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                        
Query: 2040   aagccctttatgtggtgtcgctcagacgcccgactatggcat 2081
              ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265472 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265513



 Score = 75.8 bits (38), Expect = 8e-10
 Identities = 41/42 (97%)
 Strand = Plus / Plus

                                                        
Query: 2040   aagccctttatgtggtgtcgctcagacgcccgactatggcat 2081
              ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 265522 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265563



 Score = 71.9 bits (36), Expect = 1e-08
 Identities = 48/52 (92%)
 Strand = Plus / Plus

                                                                  
Query: 1857   aagccctttatgtggtgtcgattagatgcctgactgtggcatgcttgttatt 1908
              |||||||||||||||||||| | ||| ||| |||||||||||||||||||||
Sbjct: 265572 aagccctttatgtggtgtcgctcagacgcccgactgtggcatgcttgttatt 265623



 Score = 67.9 bits (34), Expect = 2e-07
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                        
Query: 2040   aagccctttatgtggtgtcgctcagacgcccgactatggcat 2081
              |||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 265122 aagccctttatgtggtgtcgcttagacgcccgactgtggcat 265163



 Score = 67.9 bits (34), Expect = 2e-07
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                    
Query: 1979   aagccttttatgtggtgtcgctcagacgcccgactatg 2016
              ||||| ||||||||||||||||||||||||||||||||
Sbjct: 265172 aagccctttatgtggtgtcgctcagacgcccgactatg 265209



 Score = 67.9 bits (34), Expect = 2e-07
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                        
Query: 2040   aagccctttatgtggtgtcgctcagacgcccgactatggcat 2081
              |||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 265222 aagccccttatgtggtgtcgctcagacgcccgactgtggcat 265263



 Score = 67.9 bits (34), Expect = 2e-07
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                        
Query: 1918   aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
              ||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 265272 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265313



 Score = 67.9 bits (34), Expect = 2e-07
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                        
Query: 2040   aagccctttatgtggtgtcgctcagacgcccgactatggcat 2081
              ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 265322 aagccctttatgtggtgtctctcagacgcccgactgtggcat 265363



 Score = 67.9 bits (34), Expect = 2e-07
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                        
Query: 1918   aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
              ||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 265372 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265413



 Score = 67.9 bits (34), Expect = 2e-07
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                                
Query: 2040   aagccctttatgtggtgtcgctcagacgcccgac 2073
              ||||||||||||||||||||||||||||||||||
Sbjct: 265422 aagccctttatgtggtgtcgctcagacgcccgac 265455



 Score = 67.9 bits (34), Expect = 2e-07
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                        
Query: 1918   aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
              ||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 265472 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265513



 Score = 67.9 bits (34), Expect = 2e-07
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                        
Query: 1918   aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
              ||||||||| |||||||||||||||||| |||||||||||||
Sbjct: 265522 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265563



 Score = 61.9 bits (31), Expect = 1e-05
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                 
Query: 1979   aagccttttatgtggtgtcgctcagacgcccgact 2013
              ||||| |||||||||||||||||||||||||||||
Sbjct: 265272 aagccctttatgtggtgtcgctcagacgcccgact 265306



 Score = 61.9 bits (31), Expect = 1e-05
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                 
Query: 1979   aagccttttatgtggtgtcgctcagacgcccgact 2013
              ||||| |||||||||||||||||||||||||||||
Sbjct: 265372 aagccctttatgtggtgtcgctcagacgcccgact 265406



 Score = 61.9 bits (31), Expect = 1e-05
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                 
Query: 1979   aagccttttatgtggtgtcgctcagacgcccgact 2013
              ||||| |||||||||||||||||||||||||||||
Sbjct: 265472 aagccctttatgtggtgtcgctcagacgcccgact 265506



 Score = 61.9 bits (31), Expect = 1e-05
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                 
Query: 1979   aagccttttatgtggtgtcgctcagacgcccgact 2013
              ||||| |||||||||||||||||||||||||||||
Sbjct: 265522 aagccctttatgtggtgtcgctcagacgcccgact 265556



 Score = 61.9 bits (31), Expect = 1e-05
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                                 
Query: 1979   aagccttttatgtggtgtcgctcagacgcccgact 2013
              ||||| |||||||||||||||||||||||||||||
Sbjct: 265572 aagccctttatgtggtgtcgctcagacgcccgact 265606



 Score = 60.0 bits (30), Expect = 4e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 1857   aagccctttatgtggtgtcgattagatgcctgactgtggcat 1898
              |||||||||||||||||||| ||||| ||| |||||||||||
Sbjct: 265122 aagccctttatgtggtgtcgcttagacgcccgactgtggcat 265163



 Score = 60.0 bits (30), Expect = 4e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 1918   aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
              ||||||||| |||||||||||| ||||| |||||||||||||
Sbjct: 265122 aagccctttatgtggtgtcgcttagacgcccgactgtggcat 265163



 Score = 60.0 bits (30), Expect = 4e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 1918   aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
              ||||||||| |||||||||||||||||| |||||| ||||||
Sbjct: 265172 aagccctttatgtggtgtcgctcagacgcccgactatggcat 265213



 Score = 60.0 bits (30), Expect = 4e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 1918   aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
              |||||| || |||||||||||||||||| |||||||||||||
Sbjct: 265222 aagccccttatgtggtgtcgctcagacgcccgactgtggcat 265263



 Score = 60.0 bits (30), Expect = 4e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 1918   aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
              ||||||||| ||||||||| |||||||| |||||||||||||
Sbjct: 265322 aagccctttatgtggtgtctctcagacgcccgactgtggcat 265363



 Score = 60.0 bits (30), Expect = 4e-05
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                        
Query: 1918   aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
              ||||||||| |||||||||||||||||| ||||| |||||||
Sbjct: 265422 aagccctttatgtggtgtcgctcagacgcccgacagtggcat 265463



 Score = 60.0 bits (30), Expect = 4e-05
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                
Query: 1979   aagccttttatgtggtgtcgctcagacgcccgac 2012
              ||||| ||||||||||||||||||||||||||||
Sbjct: 265422 aagccctttatgtggtgtcgctcagacgcccgac 265455



 Score = 56.0 bits (28), Expect = 7e-04
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                          
Query: 1986   ttatgtggtgtcgctcagacgcccgact 2013
              ||||||||||||||||||||||||||||
Sbjct: 265229 ttatgtggtgtcgctcagacgcccgact 265256



 Score = 54.0 bits (27), Expect = 0.003
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 1979   aagccttttatgtggtgtcgctcagacgcccgact 2013
              ||||| |||||||||||||||| ||||||||||||
Sbjct: 265122 aagccctttatgtggtgtcgcttagacgcccgact 265156



 Score = 54.0 bits (27), Expect = 0.003
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 1979   aagccttttatgtggtgtcgctcagacgcccgact 2013
              ||||| ||||||||||||| |||||||||||||||
Sbjct: 265322 aagccctttatgtggtgtctctcagacgcccgact 265356



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 1857   aagccctttatgtggtgtcgattagatgcctgactgtggcat 1898
              |||||||||||||||||||| | ||| ||| |||||||||||
Sbjct: 265272 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265313



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 1857   aagccctttatgtggtgtcgattagatgcctgactgtggcat 1898
              |||||||||||||||||||| | ||| ||| |||||||||||
Sbjct: 265372 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265413



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 1857   aagccctttatgtggtgtcgattagatgcctgactgtggcat 1898
              |||||||||||||||||||| | ||| ||| |||||||||||
Sbjct: 265472 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265513



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 1857   aagccctttatgtggtgtcgattagatgcctgactgtggcat 1898
              |||||||||||||||||||| | ||| ||| |||||||||||
Sbjct: 265522 aagccctttatgtggtgtcgctcagacgcccgactgtggcat 265563



 Score = 44.1 bits (22), Expect = 2.7
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 1857   aagccctttatgtggtgtcgattagatgcctgactgtggcat 1898
              |||||||||||||||||||| | ||| ||| |||| ||||||
Sbjct: 265172 aagccctttatgtggtgtcgctcagacgcccgactatggcat 265213



 Score = 44.1 bits (22), Expect = 2.7
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 1857   aagccctttatgtggtgtcgattagatgcctgactgtggcat 1898
              |||||| ||||||||||||| | ||| ||| |||||||||||
Sbjct: 265222 aagccccttatgtggtgtcgctcagacgcccgactgtggcat 265263



 Score = 44.1 bits (22), Expect = 2.7
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 1857   aagccctttatgtggtgtcgattagatgcctgactgtggcat 1898
              |||||||||||||||||||  | ||| ||| |||||||||||
Sbjct: 265322 aagccctttatgtggtgtctctcagacgcccgactgtggcat 265363



 Score = 44.1 bits (22), Expect = 2.7
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                        
Query: 1857   aagccctttatgtggtgtcgattagatgcctgactgtggcat 1898
              |||||||||||||||||||| | ||| ||| ||| |||||||
Sbjct: 265422 aagccctttatgtggtgtcgctcagacgcccgacagtggcat 265463
to top
>gb|AY919050.1| Lolium perenne clone LpSSR026 SSR marker sequence
          Length = 529

 Score = 63.9 bits (32), Expect = 3e-06
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                            
Query: 1624 tgcagagtcaaaactattcgagtagccgcgtccacggtcaaggacgac 1671
            |||||||| |||||||||||| |||||| ||||||||||| |||||||
Sbjct: 116  tgcagagttaaaactattcgaatagccgtgtccacggtcatggacgac 163
to top
>gb|DQ128029.1| Triticum turgidum clone Td3-2, genomic sequence
          Length = 403

 Score = 61.9 bits (31), Expect = 1e-05
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 2040 aagccctttatgtggtgtcgctcagacgcccgact 2074
            |||||||||||||||||||||| ||||||||||||
Sbjct: 213  aagccctttatgtggtgtcgctaagacgcccgact 179



 Score = 61.9 bits (31), Expect = 1e-05
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                               
Query: 2040 aagccctttatgtggtgtcgctcagacgcccgact 2074
            |||||||||||||||||||||| ||||||||||||
Sbjct: 313  aagccctttatgtggtgtcgctaagacgcccgact 279



 Score = 54.0 bits (27), Expect = 0.003
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 1918 aagccctttgtgtggtgtcgctcagacgtccgactgtgg 1956
            ||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 213  aagccctttatgtggtgtcgctaagacgcccgactgtgg 175



 Score = 54.0 bits (27), Expect = 0.003
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 1979 aagccttttatgtggtgtcgctcagacgcccgact 2013
            ||||| |||||||||||||||| ||||||||||||
Sbjct: 213  aagccctttatgtggtgtcgctaagacgcccgact 179



 Score = 54.0 bits (27), Expect = 0.003
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                   
Query: 1918 aagccctttgtgtggtgtcgctcagacgtccgactgtgg 1956
            ||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 313  aagccctttatgtggtgtcgctaagacgcccgactgtgg 275



 Score = 54.0 bits (27), Expect = 0.003
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 1979 aagccttttatgtggtgtcgctcagacgcccgact 2013
            ||||| |||||||||||||||| ||||||||||||
Sbjct: 313  aagccctttatgtggtgtcgctaagacgcccgact 279



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 2040 aagccctttatgtggtgtcgctcagacgcccgactatggcat 2081
            |||||||||||||| ||||| | |||||||||||| ||||||
Sbjct: 113  aagccctttatgtgttgtcggtaagacgcccgactgtggcat 72



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 1918 aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
            ||||||||| |||| |||||| | ||||||||||||||||||
Sbjct: 163  aagccctttctgtgatgtcgccccgacgtccgactgtggcat 122



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 1918 aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
            ||||||||| |||| |||||| | ||||||||||||||||||
Sbjct: 263  aagccctttctgtgatgtcgccccgacgtccgactgtggcat 222



 Score = 52.0 bits (26), Expect = 0.011
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 1918 aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
            ||||||||| |||| |||||| | ||||||||||||||||||
Sbjct: 363  aagccctttctgtgatgtcgccccgacgtccgactgtggcat 322



 Score = 46.1 bits (23), Expect = 0.67
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 1857 aagccctttatgtggtgtcgattagatgcctgactgtgg 1895
            |||||||||||||||||||| | ||| ||| ||||||||
Sbjct: 213  aagccctttatgtggtgtcgctaagacgcccgactgtgg 175



 Score = 46.1 bits (23), Expect = 0.67
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 1857 aagccctttatgtggtgtcgattagatgcctgactgtgg 1895
            |||||||||||||||||||| | ||| ||| ||||||||
Sbjct: 313  aagccctttatgtggtgtcgctaagacgcccgactgtgg 275



 Score = 44.1 bits (22), Expect = 2.7
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 1918 aagccctttgtgtggtgtcgctcagacgtccgactgtggcat 1959
            ||||||||| |||| ||||| | ||||| |||||||||||||
Sbjct: 113  aagccctttatgtgttgtcggtaagacgcccgactgtggcat 72



 Score = 44.1 bits (22), Expect = 2.7
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 1857 aagccctttatgtggtgtcgattagatgcctgactgtggcat 1898
            |||||||||||||| ||||| | ||| ||| |||||||||||
Sbjct: 113  aagccctttatgtgttgtcggtaagacgcccgactgtggcat 72
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>gb|DQ399090.1| Lolium multiflorum clone lm27 microsatellite sequence
          Length = 373

 Score = 58.0 bits (29), Expect = 2e-04
 Identities = 59/69 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1603 gtgggtaaagagtacacgctatgcagagtcaaaactattcgagtagccgcgtccacggtc 1662
            ||||| |||| |||||  || |||||||| |||||||||||| ||||||  |||||||||
Sbjct: 57   gtgggaaaagtgtacaatctctgcagagttaaaactattcgaatagccgtatccacggtc 116

                     
Query: 1663 aaggacgac 1671
            | |||||||
Sbjct: 117  atggacgac 125
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>gb|DQ128040.1| Triticum aestivum clone A4-4 Ty3/gypsy-like retrotransposon, partial
            sequence
          Length = 470

 Score = 50.1 bits (25), Expect = 0.043
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 2157 cctttcaaggcatcgctccagacacccgatcgg 2189
            |||||| |||||||||| |||||||||||||||
Sbjct: 52   cctttcgaggcatcgcttcagacacccgatcgg 84
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>gb|AC120497.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0082N11, from chromosome 10, complete sequence
          Length = 127525

 Score = 50.1 bits (25), Expect = 0.043
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 1626  cagagtcaaaactattcgagtagccgcgtccacggtcaaggacga 1670
             |||||| |||||||||||| |||||| ||||||||| | ||||||
Sbjct: 73564 cagagtaaaaactattcgaatagccgtgtccacggttacggacga 73520
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>emb|BX927388.14| Zebrafish DNA sequence from clone CH211-160J14 in linkage group 21,
             complete sequence
          Length = 163426

 Score = 50.1 bits (25), Expect = 0.043
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 627   actccaaatgatttggttcattttcctac 655
             |||||||||||||||||||||||| ||||
Sbjct: 66088 actccaaatgatttggttcatttttctac 66116
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>gb|AC113339.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
            Nipponbare clone OSJNBb0047B19, from chromosome 10,
            complete sequence
          Length = 137015

 Score = 50.1 bits (25), Expect = 0.043
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                         
Query: 1626 cagagtcaaaactattcgagtagccgcgtccacggtcaaggacga 1670
            |||||| |||||||||||| |||||| ||||||||| | ||||||
Sbjct: 6039 cagagtaaaaactattcgaatagccgtgtccacggttacggacga 5995
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.043
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                            
Query: 1626    cagagtcaaaactattcgagtagccgcgtccacggtcaaggacga 1670
               |||||| |||||||||||| |||||| ||||||||| | ||||||
Sbjct: 7563045 cagagtaaaaactattcgaatagccgtgtccacggttacggacga 7563001
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.043
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                                 
Query: 1603     gtgggtaaagagtacacgctatgcagagtcaaaactattcgagtagccg 1651
                |||||||||| |||||  ||||||||||| ||||||| |||| ||||||
Sbjct: 14323302 gtgggtaaagtgtacaaactatgcagagtaaaaactaatcgattagccg 14323350
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>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0022A24
          Length = 148347

 Score = 50.1 bits (25), Expect = 0.043
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                              
Query: 1603  gtgggtaaagagtacacgctatgcagagtcaaaactattcgagtagccg 1651
             |||||||||| |||||  ||||||||||| ||||||| |||| ||||||
Sbjct: 45224 gtgggtaaagtgtacaaactatgcagagtaaaaactaatcgattagccg 45272
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>gb|AC146946.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0037B06 map near 50283S, complete sequence
          Length = 149398

 Score = 48.1 bits (24), Expect = 0.17
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 1637  ctattcgagtagccgcgtccacggtcaaggac 1668
             |||||||| |||||||||||||||||| ||||
Sbjct: 50475 ctattcgaatagccgcgtccacggtcatggac 50444
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11
          Length = 28386948

 Score = 48.1 bits (24), Expect = 0.17
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 1637     ctattcgagtagccgcgtccacggtcaaggac 1668
                |||||||| |||||||||||||||||| ||||
Sbjct: 14685809 ctattcgaatagccgcgtccacggtcatggac 14685840
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>gb|AC011233.6| Homo sapiens BAC clone RP11-105F19 from 2, complete sequence
          Length = 156939

 Score = 48.1 bits (24), Expect = 0.17
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 609   tctaatttgtaaaataagactccaaatg 636
             ||||||||||||||||||||| ||||||
Sbjct: 14084 tctaatttgtaaaataagactacaaatg 14111
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>gb|AY204215.1| Hordeum vulgare subsp. spontaneum clone Ghs-L-4 Ty3-gypsy
            retrotransposon RT gene, partial sequence
          Length = 477

 Score = 48.1 bits (24), Expect = 0.17
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 2397 tgtttacgagtacattcaaagtacttactggc 2428
            ||||| ||||||||||||||||||| ||||||
Sbjct: 413  tgtttgcgagtacattcaaagtactcactggc 382
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>gb|AC113395.2| Homo sapiens chromosome 5 clone RP11-418P19, complete sequence
          Length = 195369

 Score = 46.1 bits (23), Expect = 0.67
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 646    attttcctacctttctcaaattt 668
              |||||||||||||||||||||||
Sbjct: 127361 attttcctacctttctcaaattt 127383
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score = 46.1 bits (23), Expect = 0.67
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                            
Query: 1603     gtgggtaaagagtacacgctatgcagagtcaaaactattcgagtagccgcgtccacggtc 1662
                |||||||||| |||||  || |||||||||||||||| | || |||||| |  |||||||
Sbjct: 19703147 gtgggtaaagtgtacaaactttgcagagtcaaaactaattgattagccgtgctcacggtc 19703088

                   
Query: 1663     aag 1665
                |||
Sbjct: 19703087 aag 19703085
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>dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1166B08
          Length = 147667

 Score = 46.1 bits (23), Expect = 0.67
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                         
Query: 1603  gtgggtaaagagtacacgctatgcagagtcaaaactattcgagtagccgcgtccacggtc 1662
             |||||||||| |||||  || |||||||||||||||| | || |||||| |  |||||||
Sbjct: 51769 gtgggtaaagtgtacaaactttgcagagtcaaaactaattgattagccgtgctcacggtc 51710

                
Query: 1663  aag 1665
             |||
Sbjct: 51709 aag 51707
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>gb|AC091788.6| Homo sapiens BAC clone RP11-400A23 from 2, complete sequence
          Length = 92932

 Score = 46.1 bits (23), Expect = 0.67
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 597   tctttggctggctctaatttgta 619
             |||||||||||||||||||||||
Sbjct: 33203 tctttggctggctctaatttgta 33225
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>gb|AC113377.2| Homo sapiens chromosome 5 clone RP11-26N10, complete sequence
          Length = 134277

 Score = 46.1 bits (23), Expect = 0.67
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 646  attttcctacctttctcaaattt 668
            |||||||||||||||||||||||
Sbjct: 9153 attttcctacctttctcaaattt 9175
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 46.1 bits (23), Expect = 0.67
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 2052    tggtgtcgctcagacgcccgact 2074
               |||||||||||||||||||||||
Sbjct: 2014364 tggtgtcgctcagacgcccgact 2014342



 Score = 46.1 bits (23), Expect = 0.67
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 1991    tggtgtcgctcagacgcccgact 2013
               |||||||||||||||||||||||
Sbjct: 2014364 tggtgtcgctcagacgcccgact 2014342
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>gb|AC097626.9| Homo sapiens X BAC RP11-527B14 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 115435

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 598    ctttggctggctctaatttgta 619
              ||||||||||||||||||||||
Sbjct: 102961 ctttggctggctctaatttgta 102982
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>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence
          Length = 1332022

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2267   tattaaattatcaatatggtta 2288
              ||||||||||||||||||||||
Sbjct: 551548 tattaaattatcaatatggtta 551569
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>emb|CR854851.12| Zebrafish DNA sequence from clone DKEY-98D7 in linkage group 16, complete
              sequence
          Length = 218036

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2290   attatctgtttgtttgcactta 2311
              ||||||||||||||||||||||
Sbjct: 187853 attatctgtttgtttgcactta 187874
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>emb|BX293999.7| Mouse DNA sequence from clone RP24-213L10 on chromosome 2, complete
             sequence
          Length = 42983

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 2342  ttgaattatttcaagtgcatattaac 2367
             |||||||||||||||||||| |||||
Sbjct: 33055 ttgaattatttcaagtgcattttaac 33030
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>emb|AL663053.12| Mouse DNA sequence from clone RP23-436M12 on chromosome 11, complete
            sequence
          Length = 203593

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 2280 atatggttaaattatctgtttg 2301
            ||||||||||||||||||||||
Sbjct: 720  atatggttaaattatctgtttg 741
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>emb|AL604045.7| Mouse DNA sequence from clone RP23-418O11 on chromosome 11, complete
              sequence
          Length = 221399

 Score = 44.1 bits (22), Expect = 2.7
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 2280   atatggttaaattatctgtttg 2301
              ||||||||||||||||||||||
Sbjct: 220119 atatggttaaattatctgtttg 220140


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 525,150,901
Number of extensions: 29207008
Number of successful extensions: 172295
Number of sequences better than 10.0: 28
Number of HSP's gapped: 172294
Number of HSP's successfully gapped: 83
Length of query: 2741
Length of database: 18,610,659,111
Length adjustment: 23
Effective length of query: 2718
Effective length of database: 18,503,978,556
Effective search space: 50293813715208
Effective search space used: 50293813715208
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 15 (30.2 bits)
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