| Clone Name | FLbaf161n04 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ234562.1|HVU234562 Hordeum vulgare genomic DNA fragment; clone MWG0803 Length = 598 Score = 1150 bits (580), Expect = 0.0 Identities = 582/584 (99%) Strand = Plus / Plus Query: 590 aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9 aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 68 Query: 650 ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 69 ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 128 Query: 710 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 129 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 188 Query: 770 gcattcggacagcccagctcacgactcctcctgagcagtgctgctacacagagatggaag 829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 189 gcattcggacagcccagctcacgactcctcctgagcagtgctgctacacagagatggaag 248 Query: 830 aacagcatgcacatccagtgaagggacaaactggaagaacagcatatccagtgaaagaaa 889 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 249 aacagcatgcacatccagtgaagggacaaactggaagaacagcatatccagtgaaagaaa 308 Query: 890 gaactggccgcgagatggctgtcgtcaccgatcaagtaggactattcaatttaaccccca 949 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 309 gaactggccgcgagatggctgtcgtcaccgatcaagtaggactattcaatttaaccccca 368 Query: 950 ccctccatagcctgttatatgctataagcaatgtcttatgtttgtcactcctctcctgct 1009 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 369 ccctccatagcctgttatatgctataagcaatgtcttatgtttgtcactcctctcctgct 428 Query: 1010 tagtctgttgctttgtcaagatactgtgtaacctttgtgggcctgtgttttcttctgggt 1069 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 429 tagtctgttgctttgtcaagatactgtgtaacctttgtgggcctgtgttttcttctgggt 488 Query: 1070 aaaattgtaaaactttatttatctgtgcatattactgtcggtctgttgtcaagtgtttgg 1129 |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct: 489 aaaattgtaaaactttwtttatctgtgcatattmctgtcggtctgttgtcaagtgtttgg 548 Query: 1130 tggcaaatagccgagaaagaaaaacctatcaacagtattgtccc 1173 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 549 tggcaaatagccgagaaagaaaaacctatcaacagtattgtccc 592
>emb|AJ234450.1|HVU234450 Hordeum vulgare partial mRNA; clone cMWG0770 Length = 594 Score = 1126 bits (568), Expect = 0.0 Identities = 583/586 (99%), Gaps = 2/586 (0%) Strand = Plus / Plus Query: 590 aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 649 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3 aggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgcactatccag 62 Query: 650 ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 709 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 63 ccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgcaggctactt 122 Query: 710 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 769 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 123 tgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatccatggacat 182 Query: 770 gcattcggacagcccagctcacgactcctcctgagcagtgctgctacacagagatggaag 829 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 183 gcattcggacagcccagctcacgactcctcctgagcagtgctgctacacagagatggaag 242 Query: 830 aacagcatgcacatccagtgaagggacaaactggaagaacagcatatccagtg-aaagaa 888 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct: 243 aacagcatgcacatccagtgaagggacaaactggaagmacagcatatccagtgaaaagaa 302 Query: 889 agaactggccgcgagatggctg-tcgtcaccgatcaagtaggactattcaatttaacccc 947 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 303 agaactggccgcgagatggctgttcgtcaccgatcaagtaggactattcaatttaacccc 362 Query: 948 caccctccatagcctgttatatgctataagcaatgtcttatgtttgtcactcctctcctg 1007 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 caccctccatagcctgttatatgctataagcaatgtcttatgtttgtcactcctctcctg 422 Query: 1008 cttagtctgttgctttgtcaagatactgtgtaacctttgtgggcctgtgttttcttctgg 1067 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 cttagtctgttgctttgtcaagatactgtgtaacctttgtgggcctgtgttttcttctgg 482 Query: 1068 gtaaaattgtaaaactttatttatctgtgcatattactgtcggtctgttgtcaagtgttt 1127 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 gtaaaattgtaaaactttatttatctgtgcatattactgtcggtctgttgtcaagtgttt 542 Query: 1128 ggtggcaaatagccgagaaagaaaaacctatcaacagtattgtccc 1173 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 543 ggtggcaaatagccgagaaagaaaaacctatcaacagtattgtccc 588
>ref|NM_001069512.1| Oryza sativa (japonica cultivar-group) Os09g0360400 (Os09g0360400) mRNA, complete cds Length = 1101 Score = 595 bits (300), Expect = e-166 Identities = 507/576 (88%) Strand = Plus / Plus Query: 221 ggggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacgg 280 |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| Sbjct: 195 ggggaagaagcggaaggcggaggcggcgcggctggaggagacggacagggcgctgtacgg 254 Query: 281 cgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggcca 340 |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 255 ggcgttccggggcgcggccaactcgctgtcccagctctacacgctcgccatgggcggcca 314 Query: 341 gaagctctccttccaggccggcgagcgccacgccatggaaaagctgtatgaatggatctt 400 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 315 gaagctctccttccaggccggcgagcgccacgccatggaaaagctctatgaatggatctt 374 Query: 401 aagacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagca 460 || ||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| Sbjct: 375 gaggcagcatgaaaatggcttgaggctgacagttgctgatatagcctcgcacatccagca 434 Query: 461 tgagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaagcca 520 ||||| ||||||||||| |||||| | | ||||||||||||||||| |||||||||| Sbjct: 435 cgagatccagtatggaggtgacaatgcatcagcctctccaagatcacagcatgcaagcca 494 Query: 521 aagcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcgagctt 580 ||||||||| ||||| |||| ||| |||||||||| |||||||| ||||| | | ||| Sbjct: 495 aagcactcaagctacagtgcctattcccaacacaatgagccagcagccatcaccaaactt 554 Query: 581 atttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgc 640 |||||| |||||||| |||| ||| |||| |||||||||| ||||||||||| || || Sbjct: 555 atttgcgctaggaaatacaggattggtgcagtccaagaactcagcggtcttttcaaatgc 614 Query: 641 actatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgc 700 |||||| |||||||| |||||| |||||||||||| ||| ||||| |||||||| ||||| Sbjct: 615 actatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcgatgc 674 Query: 701 aggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatc 760 || ||||| || |||||| | |||||| | || | |||||||| ||||| ||||| Sbjct: 675 ggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgattcatc 734 Query: 761 catggacatgcattcggacagcccagctcacgactc 796 ||||||||||||||| |||||||||||||| ||||| Sbjct: 735 catggacatgcattcagacagcccagctcatgactc 770 Score = 48.1 bits (24), Expect = 0.073 Identities = 24/24 (100%) Strand = Plus / Plus Query: 925 gtaggactattcaatttaaccccc 948 |||||||||||||||||||||||| Sbjct: 857 gtaggactattcaatttaaccccc 880
>dbj|AK071395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095O09, full insert sequence Length = 1102 Score = 595 bits (300), Expect = e-166 Identities = 507/576 (88%) Strand = Plus / Plus Query: 221 ggggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacgg 280 |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| Sbjct: 196 ggggaagaagcggaaggcggaggcggcgcggctggaggagacggacagggcgctgtacgg 255 Query: 281 cgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggcca 340 |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 256 ggcgttccggggcgcggccaactcgctgtcccagctctacacgctcgccatgggcggcca 315 Query: 341 gaagctctccttccaggccggcgagcgccacgccatggaaaagctgtatgaatggatctt 400 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 316 gaagctctccttccaggccggcgagcgccacgccatggaaaagctctatgaatggatctt 375 Query: 401 aagacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagca 460 || ||||||||||||||||||||||||||||| | |||||||||||||||| ||||||| Sbjct: 376 gaggcagcatgaaaatggcttgaggctgacagttgctgatatagcctcgcacatccagca 435 Query: 461 tgagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaagcca 520 ||||| ||||||||||| |||||| | | ||||||||||||||||| |||||||||| Sbjct: 436 cgagatccagtatggaggtgacaatgcatcagcctctccaagatcacagcatgcaagcca 495 Query: 521 aagcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcgagctt 580 ||||||||| ||||| |||| ||| |||||||||| |||||||| ||||| | | ||| Sbjct: 496 aagcactcaagctacagtgcctattcccaacacaatgagccagcagccatcaccaaactt 555 Query: 581 atttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgc 640 |||||| |||||||| |||| ||| |||| |||||||||| ||||||||||| || || Sbjct: 556 atttgcgctaggaaatacaggattggtgcagtccaagaactcagcggtcttttcaaatgc 615 Query: 641 actatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgc 700 |||||| |||||||| |||||| |||||||||||| ||| ||||| |||||||| ||||| Sbjct: 616 actatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcgatgc 675 Query: 701 aggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatc 760 || ||||| || |||||| | |||||| | || | |||||||| ||||| ||||| Sbjct: 676 ggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgattcatc 735 Query: 761 catggacatgcattcggacagcccagctcacgactc 796 ||||||||||||||| |||||||||||||| ||||| Sbjct: 736 catggacatgcattcagacagcccagctcatgactc 771 Score = 48.1 bits (24), Expect = 0.073 Identities = 24/24 (100%) Strand = Plus / Plus Query: 925 gtaggactattcaatttaaccccc 948 |||||||||||||||||||||||| Sbjct: 858 gtaggactattcaatttaaccccc 881
>gb|AY107736.1| Zea mays PCO090313 mRNA sequence Length = 1090 Score = 400 bits (202), Expect = e-108 Identities = 490/586 (83%) Strand = Plus / Plus Query: 222 gggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacggc 281 ||||||||||| |||||||||||||| || ||||| |||||||||||||| | ||||| Sbjct: 243 gggaagaagcgcaaggcggaggcggcacgcctggaggagacggaccgggcgctctacggg 302 Query: 282 gcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggccag 341 || ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 303 gccttccggggcgccgccaactcgctctcgcagctctacacgctcggcatgggcgcgcag 362 Query: 342 aagctctccttccaggccggcgagcgccacgccatggaaaagctgtatgaatggatctta 401 ||| ||||||||| |||||||| || |||||||||||||| || |||||||||||| | Sbjct: 363 aaggcctccttccacgccggcgaacgtcacgccatggaaaaactttatgaatggatcctg 422 Query: 402 agacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacgtccagcat 461 || ||||| |||||||| |||||||| ||||| | |||| ||||||| || |||||||| Sbjct: 423 aggcagcacgaaaatggtttgaggctaacagttgctgatgtagcctcccatatccagcat 482 Query: 462 gagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaagccaa 521 ||||||||||||||||| |||||| | | ||||||||||| |||||||| | |||||| Sbjct: 483 gagattcagtatggaggtgacaatgcatcagcctctccaaggtcacaataccctagccaa 542 Query: 522 agcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcgagctta 581 |||||| | || |||| || ||||||||||||| |||||||||||| | |||||| Sbjct: 543 agcactgcaccgacaatgcacattcccaacacaagcaaccagcaaccatcgccaagctta 602 Query: 582 tttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttccaacgca 641 ||||| ||||||||| |||||||| ||| ||||||| || ||||||||| | |||| Sbjct: 603 tttgcttcaggaaaccctgggttgacacagtccaagaattccatggtcttttcaagcgca 662 Query: 642 ctatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtggggatgca 701 ||||||||||| | || ||| |||||| ||| ||||| || || |||| ||||||||| Sbjct: 663 ttatccagccccatccggcggagcctgccaccttaccacctagagcaggacggggatgca 722 Query: 702 ggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactcatcc 761 || ||||| |||||||| |||||| ||| ||||||||||| || || || ||| Sbjct: 723 gggtacttcgcgaacggtgcaagccgcgatgtgaaccccacggcttcgaatgattcgtcc 782 Query: 762 atggacatgcattcggacagcccagctcacgactcctcctgagcag 807 ||||||||||| ||||||||||||||||| ||||||| |||||||| Sbjct: 783 atggacatgcactcggacagcccagctcatgactcctactgagcag 828 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1086 atttatctgtgcatattactg 1106 ||||||||||||||||||||| Sbjct: 1044 atttatctgtgcatattactg 1064
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9 Length = 22696651 Score = 250 bits (126), Expect = 1e-62 Identities = 150/158 (94%) Strand = Plus / Plus Query: 221 ggggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacgg 280 |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| Sbjct: 11681805 ggggaagaagcggaaggcggaggcggcgcggctggaggagacggacagggcgctgtacgg 11681864 Query: 281 cgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggcca 340 |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 11681865 ggcgttccggggcgcggccaactcgctgtcccagctctacacgctcgccatgggcggcca 11681924 Query: 341 gaagctctccttccaggccggcgagcgccacgccatgg 378 |||||||||||||||||||||||||||||||||||||| Sbjct: 11681925 gaagctctccttccaggccggcgagcgccacgccatgg 11681962 Score = 238 bits (120), Expect = 4e-59 Identities = 285/340 (83%) Strand = Plus / Plus Query: 457 agcatgagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaa 516 |||| ||||| ||||||||||| |||||| | | ||||||||||||||||| |||||| Sbjct: 11685796 agcacgagatccagtatggaggtgacaatgcatcagcctctccaagatcacagcatgcaa 11685855 Query: 517 gccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcga 576 ||||||||||||| ||||| |||| ||| |||||||||| |||||||| ||||| | | Sbjct: 11685856 gccaaagcactcaagctacagtgcctattcccaacacaatgagccagcagccatcaccaa 11685915 Query: 577 gcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttcca 636 ||||||||| |||||||| |||| ||| |||| |||||||||| ||||||||||| | Sbjct: 11685916 acttatttgcgctaggaaatacaggattggtgcagtccaagaactcagcggtcttttcaa 11685975 Query: 637 acgcactatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtgggg 696 | |||||||| |||||||| |||||| |||||||||||| ||| ||||| |||||||| | Sbjct: 11685976 atgcactatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcg 11686035 Query: 697 atgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgact 756 |||| || ||||| || |||||| | |||||| | || | |||||||| ||||| | Sbjct: 11686036 atgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgatt 11686095 Query: 757 catccatggacatgcattcggacagcccagctcacgactc 796 ||||||||||||||||||| |||||||||||||| ||||| Sbjct: 11686096 catccatggacatgcattcagacagcccagctcatgactc 11686135 Score = 115 bits (58), Expect = 4e-22 Identities = 76/82 (92%) Strand = Plus / Plus Query: 377 ggaaaagctgtatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtggg 436 ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| | Sbjct: 11684237 ggaaaagctctatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgc 11684296 Query: 437 tgatatagcctcgcacgtccag 458 |||||||||||||||| ||||| Sbjct: 11684297 tgatatagcctcgcacatccag 11684318 Score = 48.1 bits (24), Expect = 0.073 Identities = 24/24 (100%) Strand = Plus / Plus Query: 925 gtaggactattcaatttaaccccc 948 |||||||||||||||||||||||| Sbjct: 11686222 gtaggactattcaatttaaccccc 11686245
>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711F01 Length = 193091 Score = 250 bits (126), Expect = 1e-62 Identities = 150/158 (94%) Strand = Plus / Plus Query: 221 ggggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacgg 280 |||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||| Sbjct: 116439 ggggaagaagcggaaggcggaggcggcgcggctggaggagacggacagggcgctgtacgg 116498 Query: 281 cgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggcca 340 |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 116499 ggcgttccggggcgcggccaactcgctgtcccagctctacacgctcgccatgggcggcca 116558 Query: 341 gaagctctccttccaggccggcgagcgccacgccatgg 378 |||||||||||||||||||||||||||||||||||||| Sbjct: 116559 gaagctctccttccaggccggcgagcgccacgccatgg 116596 Score = 238 bits (120), Expect = 4e-59 Identities = 285/340 (83%) Strand = Plus / Plus Query: 457 agcatgagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaa 516 |||| ||||| ||||||||||| |||||| | | ||||||||||||||||| |||||| Sbjct: 120430 agcacgagatccagtatggaggtgacaatgcatcagcctctccaagatcacagcatgcaa 120489 Query: 517 gccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcga 576 ||||||||||||| ||||| |||| ||| |||||||||| |||||||| ||||| | | Sbjct: 120490 gccaaagcactcaagctacagtgcctattcccaacacaatgagccagcagccatcaccaa 120549 Query: 577 gcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttcca 636 ||||||||| |||||||| |||| ||| |||| |||||||||| ||||||||||| | Sbjct: 120550 acttatttgcgctaggaaatacaggattggtgcagtccaagaactcagcggtcttttcaa 120609 Query: 637 acgcactatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtgggg 696 | |||||||| |||||||| |||||| |||||||||||| ||| ||||| |||||||| | Sbjct: 120610 atgcactatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcg 120669 Query: 697 atgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgact 756 |||| || ||||| || |||||| | |||||| | || | |||||||| ||||| | Sbjct: 120670 atgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgatt 120729 Query: 757 catccatggacatgcattcggacagcccagctcacgactc 796 ||||||||||||||||||| |||||||||||||| ||||| Sbjct: 120730 catccatggacatgcattcagacagcccagctcatgactc 120769 Score = 115 bits (58), Expect = 4e-22 Identities = 76/82 (92%) Strand = Plus / Plus Query: 377 ggaaaagctgtatgaatggatcttaagacagcatgaaaatggcttgaggctgacagtggg 436 ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| | Sbjct: 118871 ggaaaagctctatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgc 118930 Query: 437 tgatatagcctcgcacgtccag 458 |||||||||||||||| ||||| Sbjct: 118931 tgatatagcctcgcacatccag 118952 Score = 48.1 bits (24), Expect = 0.073 Identities = 24/24 (100%) Strand = Plus / Plus Query: 925 gtaggactattcaatttaaccccc 948 |||||||||||||||||||||||| Sbjct: 120856 gtaggactattcaatttaaccccc 120879
>gb|BT018115.1| Zea mays clone EL01N0553H03.c mRNA sequence Length = 1357 Score = 236 bits (119), Expect = 1e-58 Identities = 200/227 (88%) Strand = Plus / Plus Query: 222 gggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacggc 281 ||||||||||| |||||||||||||| || ||||| |||||||||||||| | ||||| Sbjct: 195 gggaagaagcgcaaggcggaggcggcacgcctggaggagacggaccgggcgctctacggg 254 Query: 282 gcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggccag 341 || ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct: 255 gccttccggggcgccgccaactcgctctcgcagctctacacgctcggcatgggcgcgcag 314 Query: 342 aagctctccttccaggccggcgagcgccacgccatggaaaagctgtatgaatggatctta 401 ||| ||||||||| |||||||| ||||||||||||||||| || |||||||||||| | Sbjct: 315 aaggcctccttccacgccggcgaacgccacgccatggaaaaactttatgaatggatcctg 374 Query: 402 agacagcatgaaaatggcttgaggctgacagtgggtgatatagcctc 448 || ||||| |||||||| |||||||| ||||| | |||| ||||||| Sbjct: 375 aggcagcacgaaaatggtttgaggctaacagttgctgatgtagcctc 421 Score = 196 bits (99), Expect = 1e-46 Identities = 288/351 (82%) Strand = Plus / Plus Query: 457 agcatgagattcagtatggaggcgacaatccgttggcctctccaagatcacaatatgcaa 516 |||||||||||||||||||||| |||||| | | ||||||||||| |||||||| | | Sbjct: 770 agcatgagattcagtatggaggtgacaatgcatcagcctctccaaggtcacaatacccta 829 Query: 517 gccaaagcactcaggctaccgtgcatatgcccaacacaagcagccagcaaccatctgcga 576 ||||||||||| | || |||| || ||||||||||||| |||||||||||| | | Sbjct: 830 gccaaagcactgcaccgacaatgcacattcccaacacaagcaaccagcaaccatcgccaa 889 Query: 577 gcttatttgcactaggaaacccagggttgacgcagcccaagaactcggcggtcttttcca 636 |||||||||| | ||||||||| |||||||| ||| ||||||| || ||||||||| | Sbjct: 890 gcttatttgctccaggaaaccctgggttgacacagtccaagaattccatggtcttttcaa 949 Query: 637 acgcactatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtgggg 696 |||| ||||||||||| | || ||| |||||||||| ||||| || || |||| |||| Sbjct: 950 gcgcattatccagccccatccggcggagcctgcaaccttaccacctagagcaggacgggg 1009 Query: 697 atgcaggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgact 756 ||||||| ||||| |||||||| |||||| ||| ||||||||||| || || | Sbjct: 1010 atgcagggtacttcgcgaacggtgcaagccgcgatgtgaaccccacggcttcgaatgatt 1069 Query: 757 catccatggacatgcattcggacagcccagctcacgactcctcctgagcag 807 | |||||||||||||| ||||||||||||||||| ||||||| |||||||| Sbjct: 1070 cgtccatggacatgcactcggacagcccagctcatgactcctactgagcag 1120
>emb|CT830346.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN056K02, full insert sequence Length = 938 Score = 145 bits (73), Expect = 4e-31 Identities = 222/272 (81%), Gaps = 6/272 (2%) Strand = Plus / Plus Query: 220 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 273 |||||| ||||||||||||||||||||||||| || | ||| | |||||||| Sbjct: 103 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 162 Query: 274 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgg 333 | |||||||| ||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 163 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgccggtg 222 Query: 334 gcggccagaagctctccttccaggccggcgagcgccacgccatggaaaagctgtatgaat 393 | |||| ||||||||||| |||||||||||||||||| ||||||| || || | | Sbjct: 223 cccaccagcgcctctccttccacgccggcgagcgccacgccttggaaaaactctaccagt 282 Query: 394 ggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacg 453 |||| | |||||||||||| |||||||||||| ||||| ||| ||||| || ||| Sbjct: 283 ggatggtgcgacagcatgaaattggcttgaggctcacagtatctgacatagcatcccaca 342 Query: 454 tccagcatgagattcagtatggaggcgacaat 485 ||||||| |||||| |||||||||| |||||| Sbjct: 343 tccagcacgagattgagtatggaggtgacaat 374
>ref|NM_001068276.1| Oryza sativa (japonica cultivar-group) Os08g0397900 (Os08g0397900) mRNA, complete cds Length = 1358 Score = 137 bits (69), Expect = 1e-28 Identities = 221/272 (81%), Gaps = 6/272 (2%) Strand = Plus / Plus Query: 220 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 273 |||||| ||||||||||||||||||||||||| || | ||| | |||||||| Sbjct: 185 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 244 Query: 274 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgg 333 | |||||||| ||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 245 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgccggtg 304 Query: 334 gcggccagaagctctccttccaggccggcgagcgccacgccatggaaaagctgtatgaat 393 | |||| ||||||||||| ||||| |||||||||||| ||||||| || || | | Sbjct: 305 cccaccagcgcctctccttccacgccggtgagcgccacgccttggaaaaactctaccagt 364 Query: 394 ggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacg 453 |||| | |||||||||||| |||||||||||| ||||| ||| ||||| || ||| Sbjct: 365 ggatggtgcgacagcatgaaattggcttgaggctcacagtatctgacatagcatcccaca 424 Query: 454 tccagcatgagattcagtatggaggcgacaat 485 ||||||| |||||| |||||||||| |||||| Sbjct: 425 tccagcacgagattgagtatggaggtgacaat 456
>dbj|AK109817.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A02, full insert sequence Length = 1358 Score = 137 bits (69), Expect = 1e-28 Identities = 221/272 (81%), Gaps = 6/272 (2%) Strand = Plus / Plus Query: 220 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 273 |||||| ||||||||||||||||||||||||| || | ||| | |||||||| Sbjct: 185 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 244 Query: 274 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgg 333 | |||||||| ||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 245 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgccggtg 304 Query: 334 gcggccagaagctctccttccaggccggcgagcgccacgccatggaaaagctgtatgaat 393 | |||| ||||||||||| ||||| |||||||||||| ||||||| || || | | Sbjct: 305 cccaccagcgcctctccttccacgccggtgagcgccacgccttggaaaaactctaccagt 364 Query: 394 ggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacg 453 |||| | |||||||||||| |||||||||||| ||||| ||| ||||| || ||| Sbjct: 365 ggatggtgcgacagcatgaaattggcttgaggctcacagtatctgacatagcatcccaca 424 Query: 454 tccagcatgagattcagtatggaggcgacaat 485 ||||||| |||||| |||||||||| |||||| Sbjct: 425 tccagcacgagattgagtatggaggtgacaat 456
>dbj|AK098973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089E18, full insert sequence Length = 913 Score = 137 bits (69), Expect = 1e-28 Identities = 221/272 (81%), Gaps = 6/272 (2%) Strand = Plus / Plus Query: 220 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 273 |||||| ||||||||||||||||||||||||| || | ||| | |||||||| Sbjct: 79 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 138 Query: 274 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgg 333 | |||||||| ||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 139 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgccggtg 198 Query: 334 gcggccagaagctctccttccaggccggcgagcgccacgccatggaaaagctgtatgaat 393 | |||| ||||||||||| ||||| |||||||||||| ||||||| || || | | Sbjct: 199 cccaccagcgcctctccttccacgccggtgagcgccacgccttggaaaaactctaccagt 258 Query: 394 ggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacg 453 |||| | |||||||||||| |||||||||||| ||||| ||| ||||| || ||| Sbjct: 259 ggatggtgcgacagcatgaaattggcttgaggctcacagtatctgacatagcatcccaca 318 Query: 454 tccagcatgagattcagtatggaggcgacaat 485 ||||||| |||||| |||||||||| |||||| Sbjct: 319 tccagcacgagattgagtatggaggtgacaat 350
>dbj|AK060114.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D12, full insert sequence Length = 1009 Score = 137 bits (69), Expect = 1e-28 Identities = 221/272 (81%), Gaps = 6/272 (2%) Strand = Plus / Plus Query: 220 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 273 |||||| ||||||||||||||||||||||||| || | ||| | |||||||| Sbjct: 100 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 159 Query: 274 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgg 333 | |||||||| ||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 160 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgccggtg 219 Query: 334 gcggccagaagctctccttccaggccggcgagcgccacgccatggaaaagctgtatgaat 393 | |||| ||||||||||| ||||| |||||||||||| ||||||| || || | | Sbjct: 220 cccaccagcgcctctccttccacgccggtgagcgccacgccttggaaaaactctaccagt 279 Query: 394 ggatcttaagacagcatgaaaatggcttgaggctgacagtgggtgatatagcctcgcacg 453 |||| | |||||||||||| |||||||||||| ||||| ||| ||||| || ||| Sbjct: 280 ggatggtgcgacagcatgaaattggcttgaggctcacagtatctgacatagcatcccaca 339 Query: 454 tccagcatgagattcagtatggaggcgacaat 485 ||||||| |||||| |||||||||| |||||| Sbjct: 340 tccagcacgagattgagtatggaggtgacaat 371
>emb|CT828616.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI031I09, full insert sequence Length = 411 Score = 115 bits (58), Expect = 4e-22 Identities = 133/158 (84%) Strand = Plus / Plus Query: 639 gcactatccagccccgtgcgccggggcctgcaaccataccatctggatcagggtggggat 698 |||||||| |||||||| |||||| |||||||||||| ||| ||||| |||||||| ||| Sbjct: 6 gcactatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcgat 65 Query: 699 gcaggctactttgcgaacggcttggcccgcgagccgaatcccacggcttcaaacgactca 758 || || ||||| || |||||| | |||||| | || | |||||||| ||||| ||| Sbjct: 66 gcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgattca 125 Query: 759 tccatggacatgcattcggacagcccagctcacgactc 796 ||||||||||||||||| |||||||||||||| ||||| Sbjct: 126 tccatggacatgcattcagacagcccagctcatgactc 163 Score = 48.1 bits (24), Expect = 0.073 Identities = 24/24 (100%) Strand = Plus / Plus Query: 925 gtaggactattcaatttaaccccc 948 |||||||||||||||||||||||| Sbjct: 250 gtaggactattcaatttaaccccc 273
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8 Length = 28434780 Score = 91.7 bits (46), Expect = 5e-15 Identities = 132/161 (81%), Gaps = 6/161 (3%) Strand = Plus / Plus Query: 220 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 273 |||||| ||||||||||||||||||||||||| || | ||| | |||||||| Sbjct: 18949746 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 18949805 Query: 274 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgg 333 | |||||||| ||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 18949806 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgccggtg 18949865 Query: 334 gcggccagaagctctccttccaggccggcgagcgccacgcc 374 | |||| ||||||||||| ||||| |||||||||||| Sbjct: 18949866 cccaccagcgcctctccttccacgccggtgagcgccacgcc 18949906 Score = 46.1 bits (23), Expect = 0.29 Identities = 29/31 (93%) Strand = Plus / Plus Query: 403 gacagcatgaaaatggcttgaggctgacagt 433 |||||||||||| |||||||||||| ||||| Sbjct: 18951508 gacagcatgaaattggcttgaggctcacagt 18951538
>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1198_B10 Length = 119768 Score = 91.7 bits (46), Expect = 5e-15 Identities = 132/161 (81%), Gaps = 6/161 (3%) Strand = Plus / Plus Query: 220 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 273 |||||| ||||||||||||||||||||||||| || | ||| | |||||||| Sbjct: 34666 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 34725 Query: 274 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgg 333 | |||||||| ||||| |||||||||||||||||||||||||||||| |||||||| | Sbjct: 34726 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgccggtg 34785 Query: 334 gcggccagaagctctccttccaggccggcgagcgccacgcc 374 | |||| ||||||||||| ||||| |||||||||||| Sbjct: 34786 cccaccagcgcctctccttccacgccggtgagcgccacgcc 34826 Score = 46.1 bits (23), Expect = 0.29 Identities = 29/31 (93%) Strand = Plus / Plus Query: 403 gacagcatgaaaatggcttgaggctgacagt 433 |||||||||||| |||||||||||| ||||| Sbjct: 36428 gacagcatgaaattggcttgaggctcacagt 36458
>emb|CT831854.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN082C22, full insert sequence Length = 846 Score = 89.7 bits (45), Expect = 2e-14 Identities = 72/81 (88%) Strand = Plus / Plus Query: 291 ggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggccagaagctctcc 350 |||||||||||||| ||||| ||||||||||| | ||||||| | |||||||||||| Sbjct: 395 ggcgccgccaactccctctcccagctctacacccaggccatggcccagcagaagctctcc 454 Query: 351 ttccaggccggcgagcgccac 371 ||||||||||||||||||||| Sbjct: 455 ttccaggccggcgagcgccac 475
>ref|NM_001049979.1| Oryza sativa (japonica cultivar-group) Os01g0589500 (Os01g0589500) mRNA, complete cds Length = 1095 Score = 89.7 bits (45), Expect = 2e-14 Identities = 72/81 (88%) Strand = Plus / Plus Query: 291 ggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggccagaagctctcc 350 |||||||||||||| ||||| ||||||||||| | ||||||| | |||||||||||| Sbjct: 210 ggcgccgccaactccctctcccagctctacacccaggccatggcccagcagaagctctcc 269 Query: 351 ttccaggccggcgagcgccac 371 ||||||||||||||||||||| Sbjct: 270 ttccaggccggcgagcgccac 290
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 89.7 bits (45), Expect = 2e-14 Identities = 72/81 (88%) Strand = Plus / Minus Query: 291 ggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggccagaagctctcc 350 |||||||||||||| ||||| ||||||||||| | ||||||| | |||||||||||| Sbjct: 22994226 ggcgccgccaactccctctcccagctctacacccaggccatggcccagcagaagctctcc 22994167 Query: 351 ttccaggccggcgagcgccac 371 ||||||||||||||||||||| Sbjct: 22994166 ttccaggccggcgagcgccac 22994146 Score = 42.1 bits (21), Expect = 4.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 282 gcgttccggggcgccgccaactcgctctcgcag 314 |||||| |||||||||||||| |||| |||||| Sbjct: 4325748 gcgttcaggggcgccgccaacgcgctgtcgcag 4325780
>dbj|AB110176.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 13YPG014 Length = 1095 Score = 89.7 bits (45), Expect = 2e-14 Identities = 72/81 (88%) Strand = Plus / Plus Query: 291 ggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggccagaagctctcc 350 |||||||||||||| ||||| ||||||||||| | ||||||| | |||||||||||| Sbjct: 210 ggcgccgccaactccctctcccagctctacacccaggccatggcccagcagaagctctcc 269 Query: 351 ttccaggccggcgagcgccac 371 ||||||||||||||||||||| Sbjct: 270 ttccaggccggcgagcgccac 290
>dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0415C01 Length = 138701 Score = 89.7 bits (45), Expect = 2e-14 Identities = 72/81 (88%) Strand = Plus / Minus Query: 291 ggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggccagaagctctcc 350 |||||||||||||| ||||| ||||||||||| | ||||||| | |||||||||||| Sbjct: 64632 ggcgccgccaactccctctcccagctctacacccaggccatggcccagcagaagctctcc 64573 Query: 351 ttccaggccggcgagcgccac 371 ||||||||||||||||||||| Sbjct: 64572 ttccaggccggcgagcgccac 64552
>dbj|AK099494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027F04, full insert sequence Length = 1095 Score = 89.7 bits (45), Expect = 2e-14 Identities = 72/81 (88%) Strand = Plus / Plus Query: 291 ggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggccagaagctctcc 350 |||||||||||||| ||||| ||||||||||| | ||||||| | |||||||||||| Sbjct: 228 ggcgccgccaactccctctcccagctctacacccaggccatggcccagcagaagctctcc 287 Query: 351 ttccaggccggcgagcgccac 371 ||||||||||||||||||||| Sbjct: 288 ttccaggccggcgagcgccac 308
>dbj|AK066191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051C07, full insert sequence Length = 2598 Score = 89.7 bits (45), Expect = 2e-14 Identities = 72/81 (88%) Strand = Plus / Plus Query: 291 ggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggccagaagctctcc 350 |||||||||||||| ||||| ||||||||||| | ||||||| | |||||||||||| Sbjct: 195 ggcgccgccaactccctctcccagctctacacccaggccatggcccagcagaagctctcc 254 Query: 351 ttccaggccggcgagcgccac 371 ||||||||||||||||||||| Sbjct: 255 ttccaggccggcgagcgccac 275
>dbj|AK061874.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A07, full insert sequence Length = 977 Score = 89.7 bits (45), Expect = 2e-14 Identities = 72/81 (88%) Strand = Plus / Plus Query: 291 ggcgccgccaactcgctctcgcagctctacacgctcgccatgggcggccagaagctctcc 350 |||||||||||||| ||||| ||||||||||| | ||||||| | |||||||||||| Sbjct: 175 ggcgccgccaactccctctcccagctctacacccaggccatggcccagcagaagctctcc 234 Query: 351 ttccaggccggcgagcgccac 371 ||||||||||||||||||||| Sbjct: 235 ttccaggccggcgagcgccac 255
>gb|AF479038.1| Triticum aestivum holocarboxylase synthetase mRNA, partial cds Length = 627 Score = 61.9 bits (31), Expect = 5e-06 Identities = 43/47 (91%) Strand = Plus / Plus Query: 339 cagaagctctccttccaggccggcgagcgccacgccatggaaaagct 385 |||||||||||||||||||| |||||||| |||||| | |||||||| Sbjct: 148 cagaagctctccttccaggctggcgagcggcacgccctcgaaaagct 194
>dbj|AK226926.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL09-23-K18 Length = 826 Score = 50.1 bits (25), Expect = 0.018 Identities = 43/49 (87%) Strand = Plus / Plus Query: 271 ccatgtacggcgcgttccggggcgccgccaactcgctctcgcagctcta 319 ||||||| |||||||| || ||||| || || ||||||||||||||||| Sbjct: 228 ccatgtatggcgcgtttcgaggcgctgctaattcgctctcgcagctcta 276
>ref|NM_125874.2| Arabidopsis thaliana unknown protein (AT5G64780) mRNA, complete cds Length = 839 Score = 50.1 bits (25), Expect = 0.018 Identities = 43/49 (87%) Strand = Plus / Plus Query: 271 ccatgtacggcgcgttccggggcgccgccaactcgctctcgcagctcta 319 ||||||| |||||||| || ||||| || || ||||||||||||||||| Sbjct: 223 ccatgtatggcgcgtttcgaggcgctgctaattcgctctcgcagctcta 271
>gb|AY091256.1| Arabidopsis thaliana unknown protein (At5g64780) mRNA, complete cds Length = 559 Score = 50.1 bits (25), Expect = 0.018 Identities = 43/49 (87%) Strand = Plus / Plus Query: 271 ccatgtacggcgcgttccggggcgccgccaactcgctctcgcagctcta 319 ||||||| |||||||| || ||||| || || ||||||||||||||||| Sbjct: 53 ccatgtatggcgcgtttcgaggcgctgctaattcgctctcgcagctcta 101
>gb|AY074385.1| Arabidopsis thaliana unknown protein (At5g64780) mRNA, complete cds Length = 886 Score = 50.1 bits (25), Expect = 0.018 Identities = 43/49 (87%) Strand = Plus / Plus Query: 271 ccatgtacggcgcgttccggggcgccgccaactcgctctcgcagctcta 319 ||||||| |||||||| || ||||| || || ||||||||||||||||| Sbjct: 223 ccatgtatggcgcgtttcgaggcgctgctaattcgctctcgcagctcta 271
>dbj|AB025637.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MVP7 Length = 39645 Score = 50.1 bits (25), Expect = 0.018 Identities = 43/49 (87%) Strand = Plus / Minus Query: 271 ccatgtacggcgcgttccggggcgccgccaactcgctctcgcagctcta 319 ||||||| |||||||| || ||||| || || ||||||||||||||||| Sbjct: 38883 ccatgtatggcgcgtttcgaggcgctgctaattcgctctcgcagctcta 38835
>gb|AC006552.7|AC006552 Homo sapiens chromosome 4 clone C0084L10 map 4p16, complete sequence Length = 185393 Score = 46.1 bits (23), Expect = 0.29 Identities = 23/23 (100%) Strand = Plus / Minus Query: 407 gcatgaaaatggcttgaggctga 429 ||||||||||||||||||||||| Sbjct: 132570 gcatgaaaatggcttgaggctga 132548
>ref|XM_546550.2| PREDICTED: Canis familiaris similar to Matrilysin precursor (Pump-1 protease) (Uterine metalloproteinase) (Matrix metalloproteinase-7) (MMP-7) (Matrin) (LOC489432), mRNA Length = 1045 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1078 aaaactttatttatctgtgcat 1099 |||||||||||||||||||||| Sbjct: 1036 aaaactttatttatctgtgcat 1015
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 40 cgcccccctcgcgacctccatc 61 |||||||||||||||||||||| Sbjct: 1785476 cgcccccctcgcgacctccatc 1785455
>gb|AC012470.16| Homo sapiens chromosome 10 clone RP11-506P9, complete sequence Length = 122543 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus Query: 1038 taacctttgtgggcctgtgttt 1059 |||||||||||||||||||||| Sbjct: 31996 taacctttgtgggcctgtgttt 31975
>emb|AL732567.8| Zebrafish DNA sequence from clone CH211-263A23 in linkage group 6, complete sequence Length = 152840 Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1058 tttcttctgggtaaaattgtaa 1079 |||||||||||||||||||||| Sbjct: 59997 tttcttctgggtaaaattgtaa 60018
>gb|AC110291.7| Homo sapiens chromosome 15, clone RP11-379H8, complete sequence Length = 117481 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 12663 gggcctgtgttttcttctggg 12643
>gb|CP000438.1| Pseudomonas aeruginosa UCBPP-PA14, complete genome Length = 6537648 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 ccttccaggccggcgagcgcc 369 ||||||||||||||||||||| Sbjct: 442575 ccttccaggccggcgagcgcc 442555
>ref|NM_001048754.1| Oryza sativa (japonica cultivar-group) Os01g0182500 (Os01g0182500) mRNA, complete cds Length = 372 Score = 42.1 bits (21), Expect = 4.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 282 gcgttccggggcgccgccaactcgctctcgcag 314 |||||| |||||||||||||| |||| |||||| Sbjct: 73 gcgttcaggggcgccgccaacgcgctgtcgcag 105
>ref|XM_507654.2| PREDICTED: Pan troglodytes enoyl Coenzyme A hydratase domain containing 3 (ECHDC3), mRNA Length = 1780 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 638 gggcctgtgttttcttctggg 658
>gb|AE004091.2| Pseudomonas aeruginosa PAO1, complete genome Length = 6264404 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 ccttccaggccggcgagcgcc 369 ||||||||||||||||||||| Sbjct: 427839 ccttccaggccggcgagcgcc 427819
>gb|CP000362.1| Roseobacter denitrificans OCh 114, complete genome Length = 4133097 Score = 42.1 bits (21), Expect = 4.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 100 cgcgcgcatctcgcccgcccctccg 124 ||||||||||||||||||| ||||| Sbjct: 1261163 cgcgcgcatctcgcccgccactccg 1261139
>ref|XM_001082165.1| PREDICTED: Macaca mulatta similar to enoyl Coenzyme A hydratase domain containing 3, transcript variant 1 (LOC693583), mRNA Length = 1627 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 521 gggcctgtgttttcttctggg 541
>ref|XM_001082412.1| PREDICTED: Macaca mulatta similar to enoyl Coenzyme A hydratase domain containing 3, transcript variant 2 (LOC693583), mRNA Length = 1671 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 521 gggcctgtgttttcttctggg 541
>gb|BC001091.1| Homo sapiens enoyl Coenzyme A hydratase domain containing 3, mRNA (cDNA clone IMAGE:3505013), partial cds Length = 1407 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 251 gggcctgtgttttcttctggg 271
>gb|BC009617.1| Homo sapiens enoyl Coenzyme A hydratase domain containing 3, mRNA (cDNA clone MGC:16831 IMAGE:3893103), complete cds Length = 1609 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 440 gggcctgtgttttcttctggg 460
>gb|AC135995.7| Homo sapiens chromosome 15, clone RP13-608F4, complete sequence Length = 157246 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 8281 gggcctgtgttttcttctggg 8301
>gb|AC126605.4| Homo sapiens chromosome 15, clone RP11-606M5, complete sequence Length = 169125 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 79851 gggcctgtgttttcttctggg 79871
>gb|AC098861.2| Homo sapiens BAC clone RP11-297J2 from 4, complete sequence Length = 185791 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 379 aaaagctgtatgaatggatct 399 ||||||||||||||||||||| Sbjct: 112631 aaaagctgtatgaatggatct 112611
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ggcggaggcggcgcggctgga 256 ||||||||||||||||||||| Sbjct: 12785904 ggcggaggcggcgcggctgga 12785884
>ref|NM_024693.2| Homo sapiens enoyl Coenzyme A hydratase domain containing 3 (ECHDC3), mRNA gb|AF275677.1|AF275677 Homo sapiens PP1494 protein mRNA, complete cds Length = 1648 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 492 gggcctgtgttttcttctggg 512
>gb|AF289604.1|AF289604 Homo sapiens clone pp8332 unknown mRNA Length = 1771 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 474 gggcctgtgttttcttctggg 494
>dbj|AK222511.1| Homo sapiens mRNA for enoyl Coenzyme A hydratase domain containing 3 variant, clone: adSE01048 Length = 1615 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 457 gggcctgtgttttcttctggg 477
>emb|AL138898.19| Human DNA sequence from clone RP11-401F24 on chromosome 10 Contains gene FLJ20909, the gene for a novel protein (MGC35403), a novel gene (LOC219731), the 3' end of the UPF2 gene for UPF2 regulator of nonsense transcripts homolog (yeast) (FLJ38872) and four CpG islands, complete sequence Length = 206587 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 26287 gggcctgtgttttcttctggg 26307
>gb|AY085304.1| Arabidopsis thaliana clone 144066 mRNA, complete sequence Length = 779 Score = 42.1 bits (21), Expect = 4.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 271 ccatgtacggcgcgttccggggcgccgccaactcgctctcgcagctcta 319 ||||||| | |||||| || ||||| || || ||||||||||||||||| Sbjct: 162 ccatgtatgacgcgtttcgaggcgctgctaattcgctctcgcagctcta 210
>emb|CR555307.1| Azoarcus sp. EbN1 plasmid 1 Length = 207355 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 cttccaggccggcgagcgcca 370 ||||||||||||||||||||| Sbjct: 124344 cttccaggccggcgagcgcca 124324
>emb|BX294152.1| Rhodopirellula baltica SH 1 complete genome; segment 20/24 Length = 304250 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 907 gctgtcgtcaccgatcaagta 927 ||||||||||||||||||||| Sbjct: 301966 gctgtcgtcaccgatcaagta 301986
>gb|AC010724.6|AC010724 Homo sapiens BAC clone RP11-152F13 from 15, complete sequence Length = 157200 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 21444 gggcctgtgttttcttctggg 21464
>emb|CR624346.1| full-length cDNA clone CS0DC010YB03 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1597 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 489 gggcctgtgttttcttctggg 509
>emb|CR621986.1| full-length cDNA clone CS0DI005YJ06 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1569 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 459 gggcctgtgttttcttctggg 479
>emb|CR599557.1| full-length cDNA clone CS0DI068YK20 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1545 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 442 gggcctgtgttttcttctggg 462
>emb|CR614444.1| full-length cDNA clone CS0DK012YK14 of HeLa cells Cot 25-normalized of Homo sapiens (human) Length = 1065 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 5 gggcctgtgttttcttctggg 25
>emb|CR612555.1| full-length cDNA clone CS0DA002YJ22 of Neuroblastoma of Homo sapiens (human) Length = 1877 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 1683 gggcctgtgttttcttctggg 1703
>emb|CR601232.1| full-length cDNA clone CS0DD007YE07 of Neuroblastoma Cot 50-normalized of Homo sapiens (human) Length = 1540 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 438 gggcctgtgttttcttctggg 458
>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0666G04 Length = 141983 Score = 42.1 bits (21), Expect = 4.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 282 gcgttccggggcgccgccaactcgctctcgcag 314 |||||| |||||||||||||| |||| |||||| Sbjct: 105518 gcgttcaggggcgccgccaacgcgctgtcgcag 105550
>dbj|AP005325.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0710F09 Length = 198867 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 236 ggcggaggcggcgcggctgga 256 ||||||||||||||||||||| Sbjct: 44028 ggcggaggcggcgcggctgga 44008
>dbj|AK024562.1| Homo sapiens cDNA: FLJ20909 fis, clone ADSE00425 Length = 1588 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 431 gggcctgtgttttcttctggg 451
>emb|X84647.1|ATLEUCD A.teichomyceticus leuC and leuD genes Length = 2982 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 ccggcgagcgccacgccatgg 378 ||||||||||||||||||||| Sbjct: 554 ccggcgagcgccacgccatgg 534
>emb|CR450834.5| Zebrafish DNA sequence from clone CH211-237B9 in linkage group 11, complete sequence Length = 137302 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1065 tgggtaaaattgtaaaacttt 1085 ||||||||||||||||||||| Sbjct: 65519 tgggtaaaattgtaaaacttt 65499
>gb|M18000.1|HUMRPS17A Human ribosomal protein S17 gene, complete cds Length = 4029 Score = 42.1 bits (21), Expect = 4.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1048 gggcctgtgttttcttctggg 1068 ||||||||||||||||||||| Sbjct: 3642 gggcctgtgttttcttctggg 3662 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 190,730,873 Number of extensions: 11267828 Number of successful extensions: 208678 Number of sequences better than 10.0: 69 Number of HSP's gapped: 208665 Number of HSP's successfully gapped: 111 Length of query: 1188 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1165 Effective length of database: 18,503,978,556 Effective search space: 21557135017740 Effective search space used: 21557135017740 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)