ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf161l14 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os06g48780:12006.t04564:unspliced-genomic 60S acidic ribosomal protein P3, putative, expressed| Length = 1595 Score = 124 bits (266), Expect(2) = 2e-29 Identities = 52/69 (75%), Positives = 61/69 (88%) Frame = +3 / +3 Query: 69 AGMGVFTFVCRDSGAEWSAKQHKGELEASAATPYDLQRQLVSAACAEDKSGGVQSSFTMV 248 A MGV+TFVCR SG EW+AKQ KGELEASAATPY+LQR+LV+AA A D + GVQSSF+MV Sbjct: 63 ADMGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMV 242 Query: 249 SPNSAIFQV 275 SP+SA+FQV Sbjct: 243 SPSSAVFQV 269 Score = 27.2 bits (53), Expect(2) = 2e-29 Identities = 11/11 (100%), Positives = 11/11 (100%) Frame = +3 / +3 Query: 405 DDLGFSLFD*I 437 DDLGFSLFD*I Sbjct: 1314 DDLGFSLFD*I 1346 Score = 117 bits (251), Expect(2) = 5e-26 Identities = 52/69 (75%), Positives = 54/69 (78%) Frame = -1 / -2 Query: 274 TWKMAELGETMVKEDWTPPDLSSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRH 95 TWK AELGETM KEDWTP S+A AA T RC S*GVAAEASSSPL CLA HS+PE RH Sbjct: 268 TWKTAELGETMEKEDWTPAAESAADAAATRRRCSS*GVAAEASSSPLSCLAVHSSPELRH 89 Query: 94 TKVKTPMPA 68 TKV TPM A Sbjct: 88 TKVYTPMSA 62 Score = 22.6 bits (43), Expect(2) = 5e-26 Identities = 9/12 (75%), Positives = 12/12 (100%) Frame = -3 / -1 Query: 434 LIKEGEAKVVLA 399 LI+EGE++VVLA Sbjct: 1343 LIEEGESEVVLA 1308
>LOC_Os01g13080:12001.t01173:unspliced-genomic 60S acidic ribosomal protein P3, putative, expressed| Length = 1519 Score = 123 bits (263), Expect(2) = 5e-29 Identities = 51/67 (76%), Positives = 59/67 (88%) Frame = +3 / +1 Query: 75 MGVFTFVCRDSGAEWSAKQHKGELEASAATPYDLQRQLVSAACAEDKSGGVQSSFTMVSP 254 MGV+TFVCR SG EW+AKQ KGELEASAATPY+LQR+LV+AA A D + GVQSSF MVSP Sbjct: 79 MGVYTFVCRSSGEEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFAMVSP 258 Query: 255 NSAIFQV 275 +SA+FQV Sbjct: 259 SSAVFQV 279 Score = 27.2 bits (53), Expect(2) = 5e-29 Identities = 11/11 (100%), Positives = 11/11 (100%) Frame = +3 / +1 Query: 405 DDLGFSLFD*I 437 DDLGFSLFD*I Sbjct: 1201 DDLGFSLFD*I 1233 Score = 116 bits (248), Expect(2) = 4e-26 Identities = 51/67 (76%), Positives = 53/67 (79%) Frame = -1 / -3 Query: 274 TWKMAELGETMVKEDWTPPDLSSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRH 95 TWK AELGETM KEDWTP S+A AA T RC S*GVAAEASSSPL CLA HS+PE RH Sbjct: 278 TWKTAELGETMAKEDWTPAAESAADAAATRRRCSS*GVAAEASSSPLSCLAVHSSPELRH 99 Query: 94 TKVKTPM 74 TKV TPM Sbjct: 98 TKV*TPM 78 Score = 24.4 bits (47), Expect(2) = 4e-26 Identities = 9/13 (69%), Positives = 13/13 (100%) Frame = -3 / -2 Query: 443 EEDLIKEGEAKVV 405 +++LIKEGE+KVV Sbjct: 1239 KQNLIKEGESKVV 1201
>LOC_Os02g34360:12002.t03075:unspliced-genomic hypothetical protein| Length = 741 Score = 35.4 bits (71), Expect = 0.36 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -1 / -3 Query: 226 TPPDLSSAQAAETSWRCRS*GVAAEASSSPLCCLA 122 +PP ++ A T WR R G AA A S CC A Sbjct: 577 SPP*CCTSSARRTPWRARRCGAAARARSCSRCCRA 473
>LOC_Os09g25910:12009.t02270:unspliced-genomic basic 7S globulin precursor, putative| Length = 1335 Score = 35.0 bits (70), Expect = 0.50 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -1 / +2 Query: 211 SSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRHTKVKTP 77 +S A + R RS +AEA+SSP CC +P R K ++P Sbjct: 386 ASTAPAPGTPRTRSRAPSAEATSSPTCCRCPPPSPRPRSGKGRSP 520
>LOC_Os01g03680:12001.t00259:unspliced-genomic Bowman-Birk type bran trypsin inhibitor precursor, putative,| expressed Length = 996 Score = 34.5 bits (69), Expect = 0.68 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = +2 / +2 Query: 470 HGPIAAVILMPCLV*LSRDVCVTFCSCEDLVMLFCSF 580 H A L PCL+ S D+CVTF L+C F Sbjct: 656 HALTARSALTPCLLPSSSDICVTFVWSRMFFFLYCVF 766
>LOC_Os06g01430:12006.t00042:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2925 Score = 33.1 bits (66), Expect = 1.8 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -1 / -2 Query: 214 LSSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRHTKV 86 L+S+QAA ++WR R+ AA ++S + SAP R + V Sbjct: 1553 LASSQAASSAWRARTASWAASSASRRRSAASRRSAPRLRASAV 1425
>LOC_Os05g49560:12005.t04389:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4652 Score = 33.1 bits (66), Expect = 1.8 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -1 / -1 Query: 214 LSSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRHTKV 86 L+S+QAA ++WR R+ AA ++S + SAP R + V Sbjct: 1553 LASSQAASSAWRARTASWAASSASRRRSAASRRSAPRLRASAV 1425
>LOC_Os05g01410:12005.t00043:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 2534 Score = 33.1 bits (66), Expect = 1.8 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -1 / -2 Query: 214 LSSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRHTKV 86 L+S+QAA ++WR R+ AA ++S + SAP R + V Sbjct: 952 LASSQAASSAWRARTASWAASSASRRRSAASRRSAPRLRASAV 824
>LOC_Os04g39720:12004.t03539:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3116 Score = 33.1 bits (66), Expect = 1.8 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -1 / -3 Query: 214 LSSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRHTKV 86 L+S+QAA ++WR R+ AA ++S + SAP R + V Sbjct: 1554 LASSQAASSAWRARTASWAASSASRRRSAASRRSAPRLRASAV 1426
>LOC_Os03g59510:12003.t05197:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3136 Score = 33.1 bits (66), Expect = 1.8 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = -1 / -2 Query: 214 LSSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRHTKV 86 L+S+QAA ++WR R+ AA ++S + SAP R + V Sbjct: 1554 LASSQAASSAWRARTASWAASSASRRRSAASRRSAPRLRASAV 1426
>LOC_Os06g39070:12006.t03605:unspliced-genomic anthocyanidin 3-O-glucosyltransferase, putative, expressed| Length = 1646 Score = 27.2 bits (53), Expect(2) = 2.3 Identities = 10/22 (45%), Positives = 11/22 (50%) Frame = -1 / +2 Query: 229 WTPPDLSSAQAAETSWRCRS*G 164 WTPP S + WR RS G Sbjct: 1247 WTPPSAPSPSSGARRWRRRSGG 1312 Score = 25.8 bits (50), Expect(2) = 2.3 Identities = 9/25 (36%), Positives = 14/25 (56%) Frame = -1 / +2 Query: 523 P*QSN*AWHQNYCGNRTMSFLACNR 449 P S+ +W + +CG T+S C R Sbjct: 935 PTSSSTSWREGWCGPATLSCGRCGR 1009
>LOC_Os04g17900:12004.t01537:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3501 Score = 32.7 bits (65), Expect = 2.4 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 / -1 Query: 93 VCRDSGAEWSAKQHKGELEASAATPY 170 V + GA+W A + E +ASAATP+ Sbjct: 1758 VSKSPGAKWGAAREYSEADASAATPF 1681
>LOC_Os01g06030:12001.t00487:unspliced-genomic conserved hypothetical protein| Length = 877 Score = 32.7 bits (65), Expect = 2.4 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = -1 / +2 Query: 208 SAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRHTKVKTPMPA 68 S+ ++ SWRCRS ++ + +P + S P SR + T PA Sbjct: 89 SSTSSSPSWRCRSARPSSCSGRTPWSAASATSTPASRSSTAPTSSPA 229
>LOC_Os12g02250:12012.t00121:unspliced-genomic mitogen-activated protein kinase, putative, expressed| Length = 6317 Score = 32.2 bits (64), Expect = 3.4 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = -1 / +3 Query: 223 PPDLSSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRHTKVKT 80 PP SSA+ + RC + A+ ++S+P C +P S T T Sbjct: 3906 PPAASSARRSSWPPRCTTSATASASTSTPSACACSRCSPTSTPTASAT 4049
>LOC_Os08g35210:12008.t03261:unspliced-genomic ferric reductase like transmembrane component family protein,| expressed Length = 9672 Score = 32.2 bits (64), Expect = 3.4 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = -1 / +1 Query: 211 SSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRHTKVKTP 77 +SA+ +WR S G + A S CC SA R T +P Sbjct: 3175 ASARTRGRTWRATSRG*SGRAGRSTSCCCPASSARRGRRTGASSP 3309
>LOC_Os03g58270:12003.t05087:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 4068 Score = 31.8 bits (63), Expect = 4.6 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 / +3 Query: 78 GVFTFVCRDSGAEWSAKQHKGELEASAAT 164 GVF VC D+G W +++ G+L A AT Sbjct: 2187 GVFHRVCADTGERWWSRRTGGKLIAKLAT 2273
>LOC_Os02g57530:12002.t05324:unspliced-genomic ethylene receptor, putative, expressed| Length = 4651 Score = 31.8 bits (63), Expect = 4.6 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 / +1 Query: 229 WTPPDLSSAQAAETSWRCRS*GVAAEAS 146 W P SS +++ TSWRCR +A S Sbjct: 2194 WRAPPPSSPRSSTTSWRCRPTAASASRS 2277
>LOC_Os02g34370:12002.t03076:unspliced-genomic expressed protein| Length = 3132 Score = 31.8 bits (63), Expect = 4.6 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = -1 / -3 Query: 220 PDLSSAQAAETSWRCRS*GVAAEASSSPLCCLA 122 P ++ A T WR R G AA A S CC A Sbjct: 1150 P*CCTSSARRTPWRARRCGAAARARSCSRCCRA 1052
>LOC_Os01g09510:12001.t00829:unspliced-genomic 60S acidic ribosomal protein P2A, putative, expressed| Length = 2137 Score = 27.6 bits (54), Expect(2) = 5.3 Identities = 12/36 (33%), Positives = 20/36 (55%) Frame = +2 / +2 Query: 476 PIAAVILMPCLV*LSRDVCVTFCSCEDLVMLFCSFD 583 PI +V+ P L+ LS +C++F ++FC D Sbjct: 1970 PICSVLSAPNLIHLSYVICLSFIFRSCFPLIFCFRD 2077 Score = 24.4 bits (47), Expect(2) = 5.3 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 / +3 Query: 408 DLGFSLFD*IFFFTLLHARND 470 D+GFSLFD*+ LL + D Sbjct: 1674 DMGFSLFD*VMRSPLLSSIPD 1736
>LOC_Os12g09850:12012.t00864:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 3138 Score = 31.3 bits (62), Expect = 6.3 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -1 / -2 Query: 214 LSSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRHTKV 86 L+S+QAA ++WR R+ AA ++S + S P R + V Sbjct: 1556 LASSQAASSAWRARTASWAASSASRRQSAASRRSTPRLRASAV 1428
>LOC_Os11g02300:12011.t00124:unspliced-genomic mitogen-activated protein kinase, putative, expressed| Length = 6263 Score = 31.3 bits (62), Expect = 6.3 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = -1 / +3 Query: 223 PPDLSSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESRHTKVKT 80 PP SSA+ + RC + A+ ++S+P C +P S T T Sbjct: 3519 PPAASSARRSSWPPRCTTSATASASTSTPSACACSRCSPTSIPTASAT 3662
>LOC_Os12g35410:12012.t03230:unspliced-genomic retrotransposon protein, putative, unclassified| Length = 5447 Score = 30.9 bits (61), Expect = 8.7 Identities = 12/39 (30%), Positives = 16/39 (41%) Frame = +2 / +1 Query: 479 IAAVILMPCLV*LSRDVCVTFCSCEDLVMLFCSFDILLW 595 + + LMPC+ C FC L L CS +W Sbjct: 931 VKGITLMPCITAFPMVFCTLFCFLFGLCFLLCSCCDFVW 1047
>LOC_Os05g31970:12005.t02793:unspliced-genomic expressed protein| Length = 857 Score = 30.9 bits (61), Expect = 8.7 Identities = 15/41 (36%), Positives = 18/41 (43%) Frame = -1 / -2 Query: 220 PDLSSAQAAETSWRCRS*GVAAEASSSPLCCLADHSAPESR 98 P +SS A T+ A ASS+P CC A P R Sbjct: 631 PPISSRAPATTAAAAARPPAACSASSAPACCTAGRRPPPRR 509
>LOC_Os04g44330:12004.t03973:unspliced-genomic transposon protein, putative, unclassified, expressed| Length = 3095 Score = 27.6 bits (54), Expect(2) = 9.8 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = +3 / +1 Query: 405 DDLGFSLFD*IFFFTLLHARNDMV 476 +DLGFSLF +F+ LL+ + D++ Sbjct: 529 EDLGFSLFRDLFWDILLYRKIDLL 600 Score = 24.0 bits (46), Expect(2) = 9.8 Identities = 6/18 (33%), Positives = 11/18 (61%) Frame = +1 / +3 Query: 481 CRSNFDAMPSLIVKGCMC 534 C+ A+ +++KGC C Sbjct: 2880 CQRESSALHEVLIKGCQC 2933 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 128,957,559 Number of extensions: 1566870 Number of successful extensions: 7511 Number of sequences better than 10.0: 24 Length of query: 207 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 159 Effective length of database: 52,912,542 Effective search space: 8413094178 Effective search space used: 8413094178 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
