ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf161l13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CT831213.1| Oryza sativa (indica cultivar-group) cDNA clone:... 224 3e-55
2gb|AY107391.1| Zea mays PCO098580 mRNA sequence 216 7e-53
3ref|NM_001049244.1| Oryza sativa (japonica cultivar-group) Os01g... 196 7e-47
4dbj|AK100277.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 7e-47
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 107 5e-20
6dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic D... 107 5e-20
7gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, comple... 44 0.59
8emb|AL591003.16| Mouse DNA sequence from clone RP23-354I24 on ch... 44 0.59
9gb|AC102892.9| Mus musculus chromosome 5, clone RP24-362B10, com... 42 2.3
10gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, com... 42 2.3
11ref|XM_959071.1| Neurospora crassa OR74A hypothetical protein (N... 42 2.3
12dbj|AB097084.2| Neurospora crassa os-4 gene for putative SSK22 l... 42 2.3
13gb|AC102467.6| Mus musculus chromosome 1, clone RP24-348G21, com... 42 2.3
14gb|AC170258.1| Mus musculus chromosome 1, clone wi1-2157A24, com... 42 2.3
15ref|XR_013432.1| PREDICTED: Macaca mulatta similar to poly(A)-sp... 40 9.2
16gb|DQ387450.1| Reticuloendotheliosis virus strain APC-566, compl... 40 9.2
17gb|AC092100.5| Homo sapiens BAC clone RP11-666G4 from 7, complet... 40 9.2
18gb|DQ003591.1| Reticuloendotheliosis virus strain SNV from USA, ... 40 9.2
19gb|AC010184.18| Homo sapiens 3 BAC RP11-438D8 (Roswell Park Canc... 40 9.2
20gb|AC093699.5| Homo sapiens BAC clone RP11-810C20 from 4, comple... 40 9.2
21dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
22gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 gen... 40 9.2
23emb|AL391666.5| Human DNA sequence from clone RP13-130D24 on chr... 40 9.2
24dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
25gb|AF246698.2| Fowlpox virus hypothetical protein gene, partial ... 40 9.2
26gb|AE005156.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 1... 40 9.2
27gb|DQ237901.1| Reticuloendotheliosis virus isolate PC-R92 polyme... 40 9.2
28emb|AL136001.6|CNS01DVR Human chromosome 14 DNA sequence BAC R-8... 40 9.2
29emb|AL844576.9| Mouse DNA sequence from clone RP23-233M15 on chr... 40 9.2
30emb|AL607074.13| Mouse DNA sequence from clone RP23-174M9 on chr... 40 9.2
31emb|AL845500.6| Mouse DNA sequence from clone RP23-221K3 on chro... 40 9.2
32gb|U49933.1|OCU49933 Oryctolagus cuniculus vitamin K-dependent p... 40 9.2 
>emb|CT831213.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN076F24, full
           insert sequence
          Length = 627
 Score =  224 bits (113), Expect = 3e-55
 Identities = 155/169 (91%)
 Strand = Plus / Plus

                                                                       
Query: 170 agatgacgcagaagcagaccatgttcaaggggcagaccaagaagaagtccatccctccca 229
           |||||||||||||||||| |  |||||||||||||   ||||||||| ||||||||||||
Sbjct: 165 agatgacgcagaagcagagccagttcaaggggcagggaaagaagaagaccatccctccca 224

                                                                       
Query: 230 gccgccatggcaaggcgccccacatccgtaaagggaagagggccgtgaagccgaccaagt 289
            |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 225 accgccatggcaaggcgccccacgtccgcaaagggaagagggccgtgaagccgaccaagt 284

                                                            
Query: 290 gcaccaaggacatggacgccgacaaggacctcacaaagttcatcaacca 338
            ||||||||||||||||||||| ||||| |||||||| |||||||||||
Sbjct: 285 tcaccaaggacatggacgccgataaggaactcacaaaattcatcaacca 333
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>gb|AY107391.1| Zea mays PCO098580 mRNA sequence
          Length = 682

 Score =  216 bits (109), Expect = 7e-53
 Identities = 202/233 (86%)
 Strand = Plus / Plus

                                                                       
Query: 170 agatgacgcagaagcagaccatgttcaaggggcagaccaagaagaagtccatccctccca 229
           |||||||||||||||||||| ||||||||||||||| |||||||||| | ||||||||||
Sbjct: 193 agatgacgcagaagcagaccctgttcaaggggcagagcaagaagaagactatccctccca 252

                                                                       
Query: 230 gccgccatggcaaggcgccccacatccgtaaagggaagagggccgtgaagccgaccaagt 289
            |||||| ||||||||||| ||  | |||||||| ||||| ||||| ||||| |||||||
Sbjct: 253 accgccacggcaaggcgcctcatgttcgtaaaggaaagagagccgtcaagcccaccaagt 312

                                                                       
Query: 290 gcaccaaggacatggacgccgacaaggacctcacaaagttcatcaaccacgcgaacgaaa 349
            ||| ||||||||||||||||| ||||| ||||| ||||||||||||||    |||||||
Sbjct: 313 tcacaaaggacatggacgccgagaaggaactcaccaagttcatcaaccagtgcaacgaaa 372

                                                                
Query: 350 taaaagctgcaaataaagctagcaaagaaggtggcgacctcagcatagtgaag 402
           |||||||||| |||   ||||||||||| || || ||||||| ||||||||||
Sbjct: 373 taaaagctgcgaatcttgctagcaaagagggcggtgacctcaacatagtgaag 425
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>ref|NM_001049244.1| Oryza sativa (japonica cultivar-group) Os01g0271700 (Os01g0271700)
           mRNA, complete cds
          Length = 2351

 Score =  196 bits (99), Expect = 7e-47
 Identities = 135/147 (91%)
 Strand = Plus / Plus

                                                                       
Query: 170 agatgacgcagaagcagaccatgttcaaggggcagaccaagaagaagtccatccctccca 229
           |||||||||||||||||| |  |||||||||||||   ||||||||| ||||||||||||
Sbjct: 150 agatgacgcagaagcagagccagttcaaggggcaggggaagaagaagaccatccctccca 209

                                                                       
Query: 230 gccgccatggcaaggcgccccacatccgtaaagggaagagggccgtgaagccgaccaagt 289
            |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 210 accgccatggcaaggcgccccacgtccgcaaagggaagagggccgtgaagccgaccaagt 269

                                      
Query: 290 gcaccaaggacatggacgccgacaagg 316
            ||||||||||||||||||||| ||||
Sbjct: 270 tcaccaaggacatggacgccgataagg 296
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>dbj|AK100277.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073H16, full
           insert sequence
          Length = 2352

 Score =  196 bits (99), Expect = 7e-47
 Identities = 135/147 (91%)
 Strand = Plus / Plus

                                                                       
Query: 170 agatgacgcagaagcagaccatgttcaaggggcagaccaagaagaagtccatccctccca 229
           |||||||||||||||||| |  |||||||||||||   ||||||||| ||||||||||||
Sbjct: 151 agatgacgcagaagcagagccagttcaaggggcaggggaagaagaagaccatccctccca 210

                                                                       
Query: 230 gccgccatggcaaggcgccccacatccgtaaagggaagagggccgtgaagccgaccaagt 289
            |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 211 accgccatggcaaggcgccccacgtccgcaaagggaagagggccgtgaagccgaccaagt 270

                                      
Query: 290 gcaccaaggacatggacgccgacaagg 316
            ||||||||||||||||||||| ||||
Sbjct: 271 tcaccaaggacatggacgccgataagg 297
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1
          Length = 43261740

 Score =  107 bits (54), Expect = 5e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                           
Query: 170     agatgacgcagaagcagaccatgttcaaggggcagaccaagaagaagtccatccctccca 229
               |||||||||||||||||| |  |||||||||||||   ||||||||| ||||||||||||
Sbjct: 9395438 agatgacgcagaagcagagccagttcaaggggcaggggaagaagaagaccatccctccca 9395379

                                                 
Query: 230     gccgccatggcaaggcgccccacatccgtaaagg 263
                |||||||||||||||||||||| |||| |||||
Sbjct: 9395378 accgccatggcaaggcgccccacgtccgcaaagg 9395345



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                       
Query: 261     agggaagagggccgtgaagccgaccaagtgcaccaaggacatggacgccgacaagg 316
               ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 9395229 agggaagagggccgtgaagccgaccaagttcaccaaggacatggacgccgataagg 9395174



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 9        actgggctgcctccccagcc 28
                ||||||||||||||||||||
Sbjct: 42248479 actgggctgcctccccagcc 42248460
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>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0693B08
          Length = 140812

 Score =  107 bits (54), Expect = 5e-20
 Identities = 84/94 (89%)
 Strand = Plus / Minus

                                                                         
Query: 170   agatgacgcagaagcagaccatgttcaaggggcagaccaagaagaagtccatccctccca 229
             |||||||||||||||||| |  |||||||||||||   ||||||||| ||||||||||||
Sbjct: 65765 agatgacgcagaagcagagccagttcaaggggcaggggaagaagaagaccatccctccca 65706

                                               
Query: 230   gccgccatggcaaggcgccccacatccgtaaagg 263
              |||||||||||||||||||||| |||| |||||
Sbjct: 65705 accgccatggcaaggcgccccacgtccgcaaagg 65672



 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                     
Query: 261   agggaagagggccgtgaagccgaccaagtgcaccaaggacatggacgccgacaagg 316
             ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 65556 agggaagagggccgtgaagccgaccaagttcaccaaggacatggacgccgataagg 65501
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>gb|AC114917.2| Mus musculus chromosome 8 clone RP23-84K6, complete sequence
          Length = 181442

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 568  tgttgtaatctgttaccagttctgtg 593
            |||||| |||||||||||||||||||
Sbjct: 3086 tgttgtcatctgttaccagttctgtg 3111
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>emb|AL591003.16| Mouse DNA sequence from clone RP23-354I24 on chromosome 13, complete
              sequence
          Length = 221647

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 568    tgttgtaatctgttaccagttctgtg 593
              |||||| |||||||||||||||||||
Sbjct: 171975 tgttgtcatctgttaccagttctgtg 172000
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>gb|AC102892.9| Mus musculus chromosome 5, clone RP24-362B10, complete sequence
          Length = 158043

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 496   atatcatgctttcatgaagaa 516
             |||||||||||||||||||||
Sbjct: 56190 atatcatgctttcatgaagaa 56210
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>gb|AC161516.9| Mus musculus chromosome 5, clone RP23-130C18, complete sequence
          Length = 226006

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 496   atatcatgctttcatgaagaa 516
             |||||||||||||||||||||
Sbjct: 15647 atatcatgctttcatgaagaa 15667
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>ref|XM_959071.1| Neurospora crassa OR74A hypothetical protein (NCU03071.1) partial
           mRNA
          Length = 4104

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 138 ccgcggcgactgctcgatcca 158
           |||||||||||||||||||||
Sbjct: 293 ccgcggcgactgctcgatcca 273
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>dbj|AB097084.2| Neurospora crassa os-4 gene for putative SSK22 like MAPKK kinase,
            complete cds
          Length = 6249

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 138  ccgcggcgactgctcgatcca 158
            |||||||||||||||||||||
Sbjct: 1320 ccgcggcgactgctcgatcca 1300
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>gb|AC102467.6| Mus musculus chromosome 1, clone RP24-348G21, complete sequence
          Length = 167344

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 502   tgctttcatgaagaaattaga 522
             |||||||||||||||||||||
Sbjct: 31922 tgctttcatgaagaaattaga 31902
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>gb|AC170258.1| Mus musculus chromosome 1, clone wi1-2157A24, complete sequence
          Length = 40121

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 502   tgctttcatgaagaaattaga 522
             |||||||||||||||||||||
Sbjct: 35249 tgctttcatgaagaaattaga 35229
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>ref|XR_013432.1| PREDICTED: Macaca mulatta similar to poly(A)-specific ribonuclease
           (deadenylation nuclease) (LOC712984), mRNA
          Length = 2737

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 410 cggatacttccaactcaaag 429
           ||||||||||||||||||||
Sbjct: 795 cggatacttccaactcaaag 776
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>gb|DQ387450.1| Reticuloendotheliosis virus strain APC-566, complete genome
          Length = 8286

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 577  ctgttaccagttctgtgaaatcca 600
            ||||||||| ||||||||||||||
Sbjct: 5198 ctgttaccatttctgtgaaatcca 5175
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>gb|AC092100.5| Homo sapiens BAC clone RP11-666G4 from 7, complete sequence
          Length = 122099

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 565   atctgttgtaatctgttacc 584
             ||||||||||||||||||||
Sbjct: 85559 atctgttgtaatctgttacc 85578
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>gb|DQ003591.1| Reticuloendotheliosis virus strain SNV from USA, complete genome
          Length = 8474

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 577  ctgttaccagttctgtgaaatcca 600
            ||||||||| ||||||||||||||
Sbjct: 5297 ctgttaccatttctgtgaaatcca 5274
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>gb|AC010184.18| Homo sapiens 3 BAC RP11-438D8 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 190580

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     ctgggctgcctccccagcca 29
              ||||||||||||||||||||
Sbjct: 130398 ctgggctgcctccccagcca 130379
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>gb|AC093699.5| Homo sapiens BAC clone RP11-810C20 from 4, complete sequence
          Length = 136898

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 357   tgcaaataaagctagcaaagaagg 380
             ||||||||||||| ||||||||||
Sbjct: 80258 tgcaaataaagcttgcaaagaagg 80235
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 576      tctgttaccagttctgtgaa 595
                ||||||||||||||||||||
Sbjct: 21844073 tctgttaccagttctgtgaa 21844054
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>gb|AC087599.14| Oryza sativa chromosome 10 BAC OSJNBa0057L21 genomic sequence, complete
              sequence
          Length = 183046

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 576    tctgttaccagttctgtgaa 595
              ||||||||||||||||||||
Sbjct: 164248 tctgttaccagttctgtgaa 164267
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>emb|AL391666.5| Human DNA sequence from clone RP13-130D24 on chromosome Xq21.31-22.1
              Contains a karyopherin (importin) beta 1 (KPNB1)
              pseudogene, complete sequence
          Length = 147080

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 413    atacttccaactcaaagcag 432
              ||||||||||||||||||||
Sbjct: 109651 atacttccaactcaaagcag 109632
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>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0401G10
          Length = 160704

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     actgggctgcctccccagcc 28
             ||||||||||||||||||||
Sbjct: 20436 actgggctgcctccccagcc 20417
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>gb|AF246698.2| Fowlpox virus hypothetical protein gene, partial cds; integrated
            reticuloendotheliosis provirus, complete sequence; and
            protein kinase-like protein gene, partial cds
          Length = 8221

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 577  ctgttaccagttctgtgaaatcca 600
            ||||||||| ||||||||||||||
Sbjct: 5235 ctgttaccatttctgtgaaatcca 5212
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>gb|AE005156.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 17 of 32 of the
            complete genome
          Length = 10091

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 317  acctcacaaagttcatcaac 336
            ||||||||||||||||||||
Sbjct: 1562 acctcacaaagttcatcaac 1543
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>gb|DQ237901.1| Reticuloendotheliosis virus isolate PC-R92 polymerase (pol) gene,
            complete cds; and envelope protein (env) gene, partial
            cds
          Length = 5029

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 577  ctgttaccagttctgtgaaatcca 600
            ||||||||| ||||||||||||||
Sbjct: 2794 ctgttaccatttctgtgaaatcca 2771
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>emb|AL136001.6|CNS01DVR Human chromosome 14 DNA sequence BAC R-865F7 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 185967

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 347    aaataaaagctgcaaataaa 366
              ||||||||||||||||||||
Sbjct: 116985 aaataaaagctgcaaataaa 116966
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>emb|AL844576.9| Mouse DNA sequence from clone RP23-233M15 on chromosome 2, complete
             sequence
          Length = 114285

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   gaaggtggcgacctcagcat 395
             ||||||||||||||||||||
Sbjct: 54440 gaaggtggcgacctcagcat 54459
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>emb|AL607074.13| Mouse DNA sequence from clone RP23-174M9 on chromosome 4, complete
              sequence
          Length = 204428

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 194    tcaaggggcagaccaagaag 213
              ||||||||||||||||||||
Sbjct: 145984 tcaaggggcagaccaagaag 146003
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>emb|AL845500.6| Mouse DNA sequence from clone RP23-221K3 on chromosome 2, complete
              sequence
          Length = 204459

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 510    tgaagaaattagactccaaa 529
              ||||||||||||||||||||
Sbjct: 192541 tgaagaaattagactccaaa 192560
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>gb|U49933.1|OCU49933 Oryctolagus cuniculus vitamin K-dependent protein C precursor mRNA,
           partial cds
          Length = 1558

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 222 ccctcccagccgccatggca 241
           ||||||||||||||||||||
Sbjct: 365 ccctcccagccgccatggca 346


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 102,564,655
Number of extensions: 5042580
Number of successful extensions: 90097
Number of sequences better than 10.0: 32
Number of HSP's gapped: 90096
Number of HSP's successfully gapped: 35
Length of query: 625
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 603
Effective length of database: 18,508,616,841
Effective search space: 11160695955123
Effective search space used: 11160695955123
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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