>P40020:FIR1_YEAST Factor interacting with REF2 - Saccharomyces cerevisiae (Baker's|
           yeast)
          Length = 876
 Score = 32.0 bits (71), Expect = 2.3
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = -2

Query: 293 PAIPVSHSVPTARSLWSTTQPLIACSVPFSSAIPPKASAIRSSSPLRFQSV 141
           P+IPV HS P          PL   S P +S IPP+A + ++ S L+  SV
Sbjct: 509 PSIPVEHSNPCTSIEIPKRSPLRFTSSPKTSDIPPEAQSPKNGSFLQEISV 559

>Q61464:ZN638_MOUSE Zinc finger protein 638 - Mus musculus (Mouse)|
          Length = 1960

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
 Frame = +1

Query: 178 AEAFGGMAEEKGTLQAMRGWVVDHKLRAVGTLWLTGIAGSIAYNWSR---PGMKTSVKLI 348
           A+A GG  E K   Q+     +      V   WL     + A    R   P M       
Sbjct: 358 ADAHGGPTESKKDYQSEADLPIRSPFGIVKASWLPKFTQAGAQKMKRLPTPSMMNDYYAA 417

Query: 349 HARLHAQALTLAALGCSALVEYYDHQSGSW---------SKVHDYAKQFLPSERN 486
             R+     +L  + CS L ++  HQ+ S           +  D+  + LPS RN
Sbjct: 418 SPRIFPHLCSLCNVECSHLKDWIQHQNTSTHIESCRQLRQQYPDWNPEILPSRRN 472

>Q95245:CY561_PIG Cytochrome b561 - Sus scrofa (Pig)|
          Length = 252

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 262 VGTLWLTGIAGSIAYNWSRPGMKTSVKLIHARLHAQALTLAALGCSALVEYY 417
           +G ++L G A  + Y   R   K + K++H  LH  A  +A +G  A+ +Y+
Sbjct: 60  IGLVFLQGDA-LLVYRVFRNEAKRTTKILHGLLHVLAFVIALVGLVAVFDYH 110

>Q60720:CY561_MOUSE Cytochrome b561 - Mus musculus (Mouse)|
          Length = 250

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 262 VGTLWLTGIAGSIAYNWSRPGMKTSVKLIHARLHAQALTLAALGCSALVEYY 417
           +G ++L G A  + Y   R   K + K++H  LH  A  +A +G  A+ +Y+
Sbjct: 58  IGMIFLQGDA-LLVYRVFRREAKRTTKILHGLLHVFAFIIALVGLVAVFDYH 108

>Q99K41:EMIL1_MOUSE EMILIN-1 precursor - Mus musculus (Mouse)|
          Length = 1017

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 22/86 (25%), Positives = 34/86 (39%)
 Frame = +1

Query: 19  PRPARPLPTPRNRAPNXXXXXXXXXXXXXXTQAPVAEAHAQTDWNRRGELDLIAEAFGGM 198
           P P+ PLP PR   PN               + PV     Q       ++  + +   G+
Sbjct: 141 PAPSTPLPRPRPVRPNLSGSSAGSHLSGLGGEGPVESEKVQ---QLERQVKSLTKELQGL 197

Query: 199 AEEKGTLQAMRGWVVDHKLRAVGTLW 276
              +G LQ M G + +   RAV T++
Sbjct: 198 ---RGVLQGMNGRLAEDVQRAVDTVF 220

>Q3U962:CO5A2_MOUSE Collagen alpha-2(V) chain precursor - Mus musculus (Mouse)|
          Length = 1497

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 396 TTQGSQRKGLSMKPGVDELDAGLHAGPGPVVRNRSRDPREPQRPYG 259
           T+ G  RKG   +PG+  +  G+   PGP     S+ PR  + P G
Sbjct: 103 TSFGRGRKGQKGEPGLVPVVTGIRGRPGPAGPPGSQGPRGDRGPKG 148


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 111,611,300
Number of extensions: 2308607
Number of successful extensions: 6295
Number of sequences better than 10.0: 6
Number of HSP's gapped: 6292
Number of HSP's successfully gapped: 6
Length of query: 234
Length of database: 100,686,439
Length adjustment: 110
Effective length of query: 124
Effective length of database: 70,513,989
Effective search space: 8743734636
Effective search space used: 8743734636
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)