ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf161k17 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ244822.1| Zea mays clone 11019 mRNA sequence Length = 763 Score = 781 bits (394), Expect = 0.0 Identities = 469/493 (95%), Gaps = 2/493 (0%) Strand = Plus / Plus Query: 193 ggaatggcggaggagaaggggacgctgcaggcgatgaggggctgggtcgtggaccataag 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 139 ggaatggcggaggagaaggggacgctgcaggcgatgaggggctgggtcgtggaccacaag 198 Query: 253 ctccgggccgtagggacgctgtggctcacggggatcgcgggatcgattgcgtacaactgg 312 || ||||||||||||||||||||||||||||||||||||||||| || || ||||||||| Sbjct: 199 ctgcgggccgtagggacgctgtggctcacggggatcgcgggatccatcgcctacaactgg 258 Query: 313 tccaggcccggcatgaagaccagcgtcaagctcatccacgccaggcttcatgctcaggcc 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 259 tccaggcccggcatgaagaccagcgtcaagctcatccacgccaggcttcatgctcaggcc 318 Query: 373 cttacgctggctgccttgggttgttccgcgctggtggagtactatgatcaccagtcaggt 432 || || |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 319 ctcaccctggctgccttgggttgttctgcgctggtggagtactatgatcaccagtcaggc 378 Query: 433 tcatggtcaaaagttcatgactatgcaaagcagttccttccatcggagagaaacgccaaa 492 ||| ||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||| Sbjct: 379 tcagggtcaaaagttcacgactatgcgaagcagttccttccgtcggacagaaacgccaaa 438 Query: 493 aaggactctgtgtagaagaggcagcaaattataatataggcttccattagctgatatgga 552 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 439 aaggactctgtgtagaagaggcagcaaattatgatataggcttccattagctgatatgga 498 Query: 553 atttgttgatgttattttctgagc--aaacaatctggcatttcacatgccgttatccaag 610 ||| |||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| Sbjct: 499 attcgttgatgttactttctgagcaaaaacaatctggcatttcaaatgccgttatccaag 558 Query: 611 ttctgcaggcttcctgttctctgtataagctactgaaccagcattttgatgcagccgtat 670 ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 559 ttccgcaggcttcctgttctctgtataagctactgaaccagcatctagatgcagccgtat 618 Query: 671 gcaaatctgtggt 683 ||||||| ||||| Sbjct: 619 gcaaatccgtggt 631 Score = 99.6 bits (50), Expect = 1e-17 Identities = 65/70 (92%), Gaps = 5/70 (7%) Strand = Plus / Plus Query: 121 gtcgcagaagcacacgcgcagacagattggaaccggagaggagagctcgatctgatagca 180 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 57 gtcgcagaagcacacgcgcagacagattggaacc-----ggagagctcgatctgatagca 111 Query: 181 gaagctttcg 190 |||||||||| Sbjct: 112 gaagctttcg 121
>emb|CT830745.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA207A01, full insert sequence Length = 632 Score = 244 bits (123), Expect = 4e-61 Identities = 240/279 (86%) Strand = Plus / Plus Query: 190 ggcggaatggcggaggagaaggggacgctgcaggcgatgaggggctgggtcgtggaccat 249 |||| |||||||||||||||| | ||| ||||| ||||||||| |||||||| ||||| Sbjct: 80 ggcgaaatggcggaggagaagagcacgatgcagtcgatgagggagtgggtcgtcgaccac 139 Query: 250 aagctccgggccgtagggacgctgtggctcacggggatcgcgggatcgattgcgtacaac 309 |||||||||||||| |||||||||||||| || ||| | ||| | ||||| ||||||||| Sbjct: 140 aagctccgggccgtcgggacgctgtggctgactggggtggcgagctcgatcgcgtacaac 199 Query: 310 tggtccaggcccggcatgaagaccagcgtcaagctcatccacgccaggcttcatgctcag 369 ||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||||| Sbjct: 200 tggtcgaggcccggcatgaagaccagcgtcaagatcatccacgccaggttgcatgctcag 259 Query: 370 gcccttacgctggctgccttgggttgttccgcgctggtggagtactatgatcaccagtca 429 ||||| || |||||||| |||| | | || || |||||||||||||| || || | |||| Sbjct: 260 gccctcacactggctgcattggctggctctgcactggtggagtactacgaccatcggtca 319 Query: 430 ggttcatggtcaaaagttcatgactatgcaaagcagttc 468 |||||| | |||| ||||||| | ||||| ||||||||| Sbjct: 320 ggttcaggatcaagagttcatcagtatgcgaagcagttc 358
>ref|NM_001067146.1| Oryza sativa (japonica cultivar-group) Os07g0673900 (Os07g0673900) mRNA, complete cds Length = 695 Score = 242 bits (122), Expect = 1e-60 Identities = 236/274 (86%) Strand = Plus / Plus Query: 195 aatggcggaggagaaggggacgctgcaggcgatgaggggctgggtcgtggaccataagct 254 |||||||||||||||| | ||| ||||| ||||||||| |||||||| ||||| ||||| Sbjct: 87 aatggcggaggagaagagcacgatgcagtcgatgagggagtgggtcgtcgaccacaagct 146 Query: 255 ccgggccgtagggacgctgtggctcacggggatcgcgggatcgattgcgtacaactggtc 314 ||||||||| |||||||||||||| || ||| | ||| | ||||| |||||||||||||| Sbjct: 147 ccgggccgtcgggacgctgtggctgactggggtggcgagctcgatcgcgtacaactggtc 206 Query: 315 caggcccggcatgaagaccagcgtcaagctcatccacgccaggcttcatgctcaggccct 374 ||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| Sbjct: 207 gaggcccggcatgaagaccagcgtcaagatcatccacgccaggttgcatgctcaggccct 266 Query: 375 tacgctggctgccttgggttgttccgcgctggtggagtactatgatcaccagtcaggttc 434 || |||||||| |||| | | || || |||||||||||||| || || | ||||||||| Sbjct: 267 cacactggctgcattggctggctctgcactggtggagtactacgaccatcggtcaggttc 326 Query: 435 atggtcaaaagttcatgactatgcaaagcagttc 468 | | |||| ||||||| | ||||| ||||||||| Sbjct: 327 aggatcaagagttcatcagtatgcgaagcagttc 360
>dbj|AK120859.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024E09, full insert sequence Length = 696 Score = 242 bits (122), Expect = 1e-60 Identities = 236/274 (86%) Strand = Plus / Plus Query: 195 aatggcggaggagaaggggacgctgcaggcgatgaggggctgggtcgtggaccataagct 254 |||||||||||||||| | ||| ||||| ||||||||| |||||||| ||||| ||||| Sbjct: 88 aatggcggaggagaagagcacgatgcagtcgatgagggagtgggtcgtcgaccacaagct 147 Query: 255 ccgggccgtagggacgctgtggctcacggggatcgcgggatcgattgcgtacaactggtc 314 ||||||||| |||||||||||||| || ||| | ||| | ||||| |||||||||||||| Sbjct: 148 ccgggccgtcgggacgctgtggctgactggggtggcgagctcgatcgcgtacaactggtc 207 Query: 315 caggcccggcatgaagaccagcgtcaagctcatccacgccaggcttcatgctcaggccct 374 ||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| Sbjct: 208 gaggcccggcatgaagaccagcgtcaagatcatccacgccaggttgcatgctcaggccct 267 Query: 375 tacgctggctgccttgggttgttccgcgctggtggagtactatgatcaccagtcaggttc 434 || |||||||| |||| | | || || |||||||||||||| || || | ||||||||| Sbjct: 268 cacactggctgcattggctggctctgcactggtggagtactacgaccatcggtcaggttc 327 Query: 435 atggtcaaaagttcatgactatgcaaagcagttc 468 | | |||| ||||||| | ||||| ||||||||| Sbjct: 328 aggatcaagagttcatcagtatgcgaagcagttc 361
>gb|DQ244143.1| Zea mays clone 2422 mRNA sequence Length = 780 Score = 232 bits (117), Expect = 1e-57 Identities = 240/281 (85%) Strand = Plus / Plus Query: 196 atggcggaggagaaggggacgctgcaggcgatgaggggctgggtcgtggaccataagctc 255 ||||||||||||||||| || ||||| || ||||| ||||| || ||||| |||||| Sbjct: 266 atggcggaggagaagggcgcgttgcagtcggcgagggagtgggtggtcgaccacaagctc 325 Query: 256 cgggccgtagggacgctgtggctcacggggatcgcgggatcgattgcgtacaactggtcc 315 |||||||| |||||||||||||||| || |||| || || || || |||||||||||| Sbjct: 326 cgggccgtcgggacgctgtggctcagcggcatcgtcggctccatcgcctacaactggtcc 385 Query: 316 aggcccggcatgaagaccagcgtcaagctcatccacgccaggcttcatgctcaggccctt 375 ||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| || Sbjct: 386 aggccgggcatgaagaccagcgtcaagatcatccacgccaggctgcatgctcaggctctc 445 Query: 376 acgctggctgccttgggttgttccgcgctggtggagtactatgatcaccagtcaggttca 435 |||||||||||||||| | | |||||||||||||||||||| || |||||| ||| ||| Sbjct: 446 acgctggctgccttggctgggtccgcgctggtggagtactacgaccaccagcaagggtca 505 Query: 436 tggtcaaaagttcatgactatgcaaagcagttccttccatc 476 | || |||||||| | |||||||||||||||||| |||| Sbjct: 506 ggatcgaaagttcaccaatatgcaaagcagttcctttcatc 546
>gb|BT017510.1| Zea mays clone EL01N0417E07.c mRNA sequence Length = 667 Score = 224 bits (113), Expect = 3e-55 Identities = 239/281 (85%) Strand = Plus / Plus Query: 196 atggcggaggagaaggggacgctgcaggcgatgaggggctgggtcgtggaccataagctc 255 ||||||||||||||||| || ||||| || ||||| ||||| || ||||| |||||| Sbjct: 164 atggcggaggagaagggcgcgttgcagtcggcgagggagtgggtggtcgaccacaagctc 223 Query: 256 cgggccgtagggacgctgtggctcacggggatcgcgggatcgattgcgtacaactggtcc 315 |||||||| |||||||||||||||| || |||| || || || || |||||||||||| Sbjct: 224 cgggccgtcgggacgctgtggctcagcggcatcgtcggctccatcgcctacaactggtcc 283 Query: 316 aggcccggcatgaagaccagcgtcaagctcatccacgccaggcttcatgctcaggccctt 375 | ||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| || Sbjct: 284 aagccgggcatgaagaccagcgtcaagatcatccacgccaggctgcatgctcaggctctc 343 Query: 376 acgctggctgccttgggttgttccgcgctggtggagtactatgatcaccagtcaggttca 435 |||||||||||||||| | | |||||||||||||||||||| || |||||| ||| ||| Sbjct: 344 acgctggctgccttggctgggtccgcgctggtggagtactacgaccaccagcaagggtca 403 Query: 436 tggtcaaaagttcatgactatgcaaagcagttccttccatc 476 | || |||||||| | |||||||||||||||||| |||| Sbjct: 404 ggatcgaaagttcaccaatatgcaaagcagttcctttcatc 444
>gb|AY106298.1| Zea mays PCO074618 mRNA sequence Length = 813 Score = 218 bits (110), Expect = 2e-53 Identities = 209/242 (86%) Strand = Plus / Plus Query: 235 tgggtcgtggaccataagctccgggccgtagggacgctgtggctcacggggatcgcggga 294 ||||| || ||||| |||||||||||||| |||||||||||||||| || |||| || Sbjct: 296 tgggtggtcgaccacaagctccgggccgtcgggacgctgtggctcagcggcatcgtcggc 355 Query: 295 tcgattgcgtacaactggtccaggcccggcatgaagaccagcgtcaagctcatccacgcc 354 || || || ||||||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct: 356 tccatcgcctacaactggtccaggccgggcatgaagaccagcgtcaagatcatccacgcc 415 Query: 355 aggcttcatgctcaggcccttacgctggctgccttgggttgttccgcgctggtggagtac 414 ||||| ||||||||||| || |||||||||||||||| | | |||||||||||||||||| Sbjct: 416 aggctgcatgctcaggctctcacgctggctgccttggctgggtccgcgctggtggagtac 475 Query: 415 tatgatcaccagtcaggttcatggtcaaaagttcatgactatgcaaagcagttccttcca 474 || || |||||| ||| ||| | || |||||||| | |||||||||||||||||| || Sbjct: 476 tacgaccaccagcaagggtcaggatcgaaagttcaccaatatgcaaagcagttcctttca 535 Query: 475 tc 476 || Sbjct: 536 tc 537
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7 Length = 29644043 Score = 115 bits (58), Expect = 2e-22 Identities = 85/94 (90%) Strand = Plus / Plus Query: 264 agggacgctgtggctcacggggatcgcgggatcgattgcgtacaactggtccaggcccgg 323 ||||||||||||||| || ||| | ||| | ||||| |||||||||||||| |||||||| Sbjct: 28430952 agggacgctgtggctgactggggtggcgagctcgatcgcgtacaactggtcgaggcccgg 28431011 Query: 324 catgaagaccagcgtcaagctcatccacgccagg 357 ||||||||||||||||||| |||||||||||||| Sbjct: 28431012 catgaagaccagcgtcaagatcatccacgccagg 28431045 Score = 73.8 bits (37), Expect = 7e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 195 aatggcggaggagaaggggacgctgcaggcgatgaggggctgggtcgtggaccataagct 254 |||||||||||||||| | ||| ||||| ||||||||| |||||||| ||||| ||||| Sbjct: 28430771 aatggcggaggagaagagcacgatgcagtcgatgagggagtgggtcgtcgaccacaagct 28430830 Query: 255 ccgggccgt 263 ||||||||| Sbjct: 28430831 ccgggccgt 28430839 Score = 71.9 bits (36), Expect = 3e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 361 catgctcaggcccttacgctggctgccttgggttgttccgcgctggtggagtactatgat 420 |||||||||||||| || |||||||| |||| | | || || |||||||||||||| || Sbjct: 28431181 catgctcaggccctcacactggctgcattggctggctctgcactggtggagtactacgac 28431240 Query: 421 caccagtcaggttcatggtcaaaagttcatgactatgcaaagcagttc 468 || | |||||||||| | |||| ||||||| | ||||| ||||||||| Sbjct: 28431241 catcggtcaggttcaggatcaagagttcatcagtatgcgaagcagttc 28431288
>dbj|AP004300.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0470D12 Length = 157248 Score = 115 bits (58), Expect = 2e-22 Identities = 85/94 (90%) Strand = Plus / Plus Query: 264 agggacgctgtggctcacggggatcgcgggatcgattgcgtacaactggtccaggcccgg 323 ||||||||||||||| || ||| | ||| | ||||| |||||||||||||| |||||||| Sbjct: 156515 agggacgctgtggctgactggggtggcgagctcgatcgcgtacaactggtcgaggcccgg 156574 Query: 324 catgaagaccagcgtcaagctcatccacgccagg 357 ||||||||||||||||||| |||||||||||||| Sbjct: 156575 catgaagaccagcgtcaagatcatccacgccagg 156608 Score = 73.8 bits (37), Expect = 7e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 195 aatggcggaggagaaggggacgctgcaggcgatgaggggctgggtcgtggaccataagct 254 |||||||||||||||| | ||| ||||| ||||||||| |||||||| ||||| ||||| Sbjct: 156334 aatggcggaggagaagagcacgatgcagtcgatgagggagtgggtcgtcgaccacaagct 156393 Query: 255 ccgggccgt 263 ||||||||| Sbjct: 156394 ccgggccgt 156402 Score = 71.9 bits (36), Expect = 3e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 361 catgctcaggcccttacgctggctgccttgggttgttccgcgctggtggagtactatgat 420 |||||||||||||| || |||||||| |||| | | || || |||||||||||||| || Sbjct: 156744 catgctcaggccctcacactggctgcattggctggctctgcactggtggagtactacgac 156803 Query: 421 caccagtcaggttcatggtcaaaagttcatgactatgcaaagcagttc 468 || | |||||||||| | |||| ||||||| | ||||| ||||||||| Sbjct: 156804 catcggtcaggttcaggatcaagagttcatcagtatgcgaagcagttc 156851
>dbj|AP006269.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0304A10 Length = 21211 Score = 115 bits (58), Expect = 2e-22 Identities = 85/94 (90%) Strand = Plus / Plus Query: 264 agggacgctgtggctcacggggatcgcgggatcgattgcgtacaactggtccaggcccgg 323 ||||||||||||||| || ||| | ||| | ||||| |||||||||||||| |||||||| Sbjct: 12739 agggacgctgtggctgactggggtggcgagctcgatcgcgtacaactggtcgaggcccgg 12798 Query: 324 catgaagaccagcgtcaagctcatccacgccagg 357 ||||||||||||||||||| |||||||||||||| Sbjct: 12799 catgaagaccagcgtcaagatcatccacgccagg 12832 Score = 73.8 bits (37), Expect = 7e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 195 aatggcggaggagaaggggacgctgcaggcgatgaggggctgggtcgtggaccataagct 254 |||||||||||||||| | ||| ||||| ||||||||| |||||||| ||||| ||||| Sbjct: 12558 aatggcggaggagaagagcacgatgcagtcgatgagggagtgggtcgtcgaccacaagct 12617 Query: 255 ccgggccgt 263 ||||||||| Sbjct: 12618 ccgggccgt 12626 Score = 71.9 bits (36), Expect = 3e-09 Identities = 90/108 (83%) Strand = Plus / Plus Query: 361 catgctcaggcccttacgctggctgccttgggttgttccgcgctggtggagtactatgat 420 |||||||||||||| || |||||||| |||| | | || || |||||||||||||| || Sbjct: 12968 catgctcaggccctcacactggctgcattggctggctctgcactggtggagtactacgac 13027 Query: 421 caccagtcaggttcatggtcaaaagttcatgactatgcaaagcagttc 468 || | |||||||||| | |||| ||||||| | ||||| ||||||||| Sbjct: 13028 catcggtcaggttcaggatcaagagttcatcagtatgcgaagcagttc 13075
>emb|CT828297.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI009N16, full insert sequence Length = 666 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 295 tcgattgcgtacaactggtccaggcccggcatgaagaccagcgtcaagctcatccacgcc 354 |||||||||||||||||||| |||||| |||||||| ||||||||| ||||||| || Sbjct: 219 tcgattgcgtacaactggtcgaggcccaatatgaagactagcgtcaagatcatccatgca 278 Query: 355 aggcttcatgctcaggccct 374 ||| | |||||||| ||||| Sbjct: 279 aggttgcatgctcaagccct 298
>emb|CT833936.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA010A24, full insert sequence Length = 643 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 295 tcgattgcgtacaactggtccaggcccggcatgaagaccagcgtcaagctcatccacgcc 354 |||||||||||||||||||| |||||| |||||||| ||||||||| ||||||| || Sbjct: 222 tcgattgcgtacaactggtcgaggcccaatatgaagactagcgtcaagatcatccatgca 281 Query: 355 aggcttcatgctcaggccct 374 ||| | |||||||| ||||| Sbjct: 282 aggttgcatgctcaagccct 301
>ref|NM_001053828.1| Oryza sativa (japonica cultivar-group) Os02g0592400 (Os02g0592400) mRNA, complete cds Length = 758 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 295 tcgattgcgtacaactggtccaggcccggcatgaagaccagcgtcaagctcatccacgcc 354 |||||||||||||||||||| |||||| |||||||| ||||||||| ||||||| || Sbjct: 219 tcgattgcgtacaactggtcgaggcccaatatgaagactagcgtcaagatcatccatgca 278 Query: 355 aggcttcatgctcaggccct 374 ||| | |||||||| ||||| Sbjct: 279 aggttgcatgctcaagccct 298
>dbj|AK121468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147K15, full insert sequence Length = 666 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 295 tcgattgcgtacaactggtccaggcccggcatgaagaccagcgtcaagctcatccacgcc 354 |||||||||||||||||||| |||||| |||||||| ||||||||| ||||||| || Sbjct: 223 tcgattgcgtacaactggtcgaggcccaatatgaagactagcgtcaagatcatccatgca 282 Query: 355 aggcttcatgctcaggccct 374 ||| | |||||||| ||||| Sbjct: 283 aggttgcatgctcaagccct 302
>dbj|AK105384.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C12, full insert sequence Length = 758 Score = 71.9 bits (36), Expect = 3e-09 Identities = 69/80 (86%) Strand = Plus / Plus Query: 295 tcgattgcgtacaactggtccaggcccggcatgaagaccagcgtcaagctcatccacgcc 354 |||||||||||||||||||| |||||| |||||||| ||||||||| ||||||| || Sbjct: 219 tcgattgcgtacaactggtcgaggcccaatatgaagactagcgtcaagatcatccatgca 278 Query: 355 aggcttcatgctcaggccct 374 ||| | |||||||| ||||| Sbjct: 279 aggttgcatgctcaagccct 298
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 63.9 bits (32), Expect = 7e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 295 tcgattgcgtacaactggtccaggcccggcatgaagaccagcgtcaagctcatcca 350 |||||||||||||||||||| |||||| |||||||| ||||||||| ||||||| Sbjct: 22947535 tcgattgcgtacaactggtcgaggcccaatatgaagactagcgtcaagatcatcca 22947590
>dbj|AP005874.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0016G10 Length = 143211 Score = 63.9 bits (32), Expect = 7e-07 Identities = 50/56 (89%) Strand = Plus / Plus Query: 295 tcgattgcgtacaactggtccaggcccggcatgaagaccagcgtcaagctcatcca 350 |||||||||||||||||||| |||||| |||||||| ||||||||| ||||||| Sbjct: 67337 tcgattgcgtacaactggtcgaggcccaatatgaagactagcgtcaagatcatcca 67392
>gb|AY641411.1| Hordeum vulgare subsp. vulgare Rph15.1 (Rph15.1) pseudogene, complete cds Length = 15688 Score = 58.0 bits (29), Expect = 4e-05 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand = Plus / Plus Query: 379 ctggctgccttgggttgttccgcgctggtgga---gtactatgatcaccagtcaggttca 435 |||||||||||||| ||||| || |||||||| |||||| ||||| |||||||||||| Sbjct: 10449 ctggctgccttgggctgttctgcactggtggagtggtactaagatcatcagtcaggttca 10508 Query: 436 tggtcaaaagttcat 450 | |||||| ||||| Sbjct: 10509 ggatcaaaaattcat 10523 Score = 56.0 bits (28), Expect = 2e-04 Identities = 56/64 (87%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 527 tataggcttccattagctgatatggaatttgttgatgttattttctgagcaaacaatctg 586 ||||||| |||| |||||||||||||||| ||| ||||| |||||||||||| |||| | Sbjct: 10582 tataggcacccatcagctgatatggaatttattgctgtta-tttctgagcaaataatccg 10640 Query: 587 gcat 590 |||| Sbjct: 10641 gcat 10644 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 535 tccattagctgatatggaatttgttgatgttattttctgagcaaacaatctggcat 590 ||||| ||||||| |||||| | ||| || |||||||||||||||||||| ||||| Sbjct: 12792 tccatcagctgatttggaatctattgttgctattttctgagcaaacaatccggcat 12847 Score = 54.0 bits (27), Expect = 7e-04 Identities = 51/59 (86%) Strand = Plus / Plus Query: 597 tgccgttatccaagttctgcaggcttcctgttctctgtataagctactgaaccagcatt 655 |||||||||| || | ||||||||| |||||| |||| | |||| |||||||||||||| Sbjct: 12862 tgccgttatcgaaatactgcaggctccctgttttctgcaaaagccactgaaccagcatt 12920 Score = 46.1 bits (23), Expect = 0.17 Identities = 84/103 (81%), Gaps = 6/103 (5%) Strand = Plus / Plus Query: 354 caggcttcatgctcaggcccttacgctgg-ctgccttgggttgttccgcgctggtggag- 411 |||||||||||| | ||||||||| | | |||||||||||||||| || ||| ||||| Sbjct: 12623 caggcttcatgcaccggcccttacccccgactgccttgggttgttctgcactgatggagt 12682 Query: 412 ----tactatgatcaccagtcaggttcatggtcaaaagttcat 450 ||| | ||||| |||||||||||| | |||||||||||| Sbjct: 12683 agtctaccaagatcatcagtcaggttcaggatcaaaagttcat 12725 Score = 44.1 bits (22), Expect = 0.67 Identities = 25/26 (96%) Strand = Plus / Plus Query: 632 tgtataagctactgaaccagcatttt 657 |||| ||||||||||||||||||||| Sbjct: 10687 tgtaaaagctactgaaccagcatttt 10712
>emb|AJ234604.1|HVU234604 Hordeum vulgare genomic DNA fragment; clone MWG0874.uni Length = 434 Score = 58.0 bits (29), Expect = 4e-05 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand = Plus / Minus Query: 379 ctggctgccttgggttgttccgcgctggtgga---gtactatgatcaccagtcaggttca 435 |||||||||||||| ||||| || |||||||| |||||| ||||| |||||||||||| Sbjct: 218 ctggctgccttgggctgttctgcactggtggagtggtactaagatcatcagtcaggttca 159 Query: 436 tggtcaaaagttcat 450 | |||||| ||||| Sbjct: 158 ggatcaaaaattcat 144 Score = 56.0 bits (28), Expect = 2e-04 Identities = 56/64 (87%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 527 tataggcttccattagctgatatggaatttgttgatgttattttctgagcaaacaatctg 586 ||||||| |||| |||||||||||||||| ||| ||||| |||||||||||| |||| | Sbjct: 85 tataggcacccatcagctgatatggaatttattgctgtta-tttctgagcaaataatccg 27 Query: 587 gcat 590 |||| Sbjct: 26 gcat 23
>ref|NM_111428.1| Arabidopsis thaliana unknown protein (AT3G05550) mRNA, complete cds Length = 294 Score = 48.1 bits (24), Expect = 0.043 Identities = 42/48 (87%) Strand = Plus / Plus Query: 324 catgaagaccagcgtcaagctcatccacgccaggcttcatgctcaggc 371 |||||| ||||| |||||| |||||||||||||| | || |||||||| Sbjct: 129 catgaaaaccagtgtcaagatcatccacgccaggttgcacgctcaggc 176
>ref|XM_868917.1| PREDICTED: Bos taurus similar to glutamate receptor, ionotropic, NMDA2A (epsilon 1) (LOC524212), partial mRNA Length = 3388 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 267 gacgctgtggctcacggggatc 288 |||||||||||||||||||||| Sbjct: 1369 gacgctgtggctcacggggatc 1390
>gb|AC108879.3| Homo sapiens chromosome X clone RP11-265P11 map p11.4, complete sequence Length = 174766 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 518 aaattataatataggcttccat 539 |||||||||||||||||||||| Sbjct: 87211 aaattataatataggcttccat 87190
>gb|AC011620.8|ATAC011620 Arabidopsis thaliana chromosome III BAC F18C1 genomic sequence, complete sequence Length = 100887 Score = 44.1 bits (22), Expect = 0.67 Identities = 31/34 (91%) Strand = Plus / Minus Query: 324 catgaagaccagcgtcaagctcatccacgccagg 357 |||||| ||||| |||||| |||||||||||||| Sbjct: 93838 catgaaaaccagtgtcaagatcatccacgccagg 93805
>gb|AC009606.4|ATAC009606 Arabidopsis thaliana chromosome III BAC F22F7 genomic sequence, complete sequence Length = 91924 Score = 44.1 bits (22), Expect = 0.67 Identities = 31/34 (91%) Strand = Plus / Minus Query: 324 catgaagaccagcgtcaagctcatccacgccagg 357 |||||| ||||| |||||| |||||||||||||| Sbjct: 7548 catgaaaaccagtgtcaagatcatccacgccagg 7515
>ref|XM_547132.2| PREDICTED: Canis familiaris similar to glutamate receptor, ionotropic, NMDA2A (epsilon 1) (LOC490012), mRNA Length = 5184 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 267 gacgctgtggctcacggggatc 288 |||||||||||||||||||||| Sbjct: 2680 gacgctgtggctcacggggatc 2701
>gb|AC163446.2| Mus musculus chromosome 5, clone RP23-151G22, complete sequence Length = 190466 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 552 aatttgttgatgttattttctg 573 |||||||||||||||||||||| Sbjct: 59132 aatttgttgatgttattttctg 59111
>emb|CT828174.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN075K07, full insert sequence Length = 740 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 314 atccacgccaggcttcacgcgcaggccct 342
>emb|CT837485.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA014B03, full insert sequence Length = 692 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 213 atccacgccaggcttcacgcgcaggccct 241
>dbj|AK240707.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J043021C11, full insert sequence Length = 616 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 170 atccacgccaggcttcacgcgcaggccct 198
>dbj|AK242044.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J075120E08, full insert sequence Length = 933 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 220 atccacgccaggcttcacgcgcaggccct 192
>ref|NM_001072501.1| Oryza sativa (japonica cultivar-group) Os12g0111600 (Os12g0111600) mRNA, complete cds Length = 679 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 214 atccacgccaggcttcacgcgcaggccct 242
>ref|NM_001072097.1| Oryza sativa (japonica cultivar-group) Os11g0112000 (Os11g0112000) mRNA, partial cds Length = 602 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 184 atccacgccaggcttcacgcgcaggccct 212
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 184 gctttcggcggaatggcggag 204 ||||||||||||||||||||| Sbjct: 540785 gctttcggcggaatggcggag 540805
>gb|AC124594.4| Mus musculus BAC clone RP23-10F19 from chromosome 15, complete sequence Length = 191302 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 574 agcaaacaatctggcatttca 594 ||||||||||||||||||||| Sbjct: 68178 agcaaacaatctggcatttca 68158
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 606908 atccacgccaggcttcacgcgcaggccct 606880
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11 Length = 28386948 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 562687 atccacgccaggcttcacgcgcaggccct 562659
>emb|AL445440.9| Human DNA sequence from clone RP11-185G1 on chromosome 9, complete sequence Length = 165833 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 565 tattttctgagcaaacaatct 585 ||||||||||||||||||||| Sbjct: 138053 tattttctgagcaaacaatct 138033
>gb|AC156801.2| Mus musculus BAC clone RP23-142F22 from chromosome 9, complete sequence Length = 197974 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 aaattataatataggcttcca 538 ||||||||||||||||||||| Sbjct: 95740 aaattataatataggcttcca 95720
>dbj|AK120264.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047D01, full insert sequence Length = 681 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 216 atccacgccaggcttcacgcgcaggccct 244
>dbj|AK119685.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-A04, full insert sequence Length = 668 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 215 atccacgccaggcttcacgcgcaggccct 243
>gb|AC098874.6| Homo sapiens BAC clone RP11-1299G23 from 2, complete sequence Length = 136367 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 ggagaggagagctcgatctga 175 ||||||||||||||||||||| Sbjct: 113505 ggagaggagagctcgatctga 113485
>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 130544 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 7625 atccacgccaggcttcacgcgcaggccct 7653
>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 181322 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 180285 atccacgccaggcttcacgcgcaggccct 180313
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 42.1 bits (21), Expect = 2.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 346 atccacgccaggcttcatgctcaggccct 374 ||||||||||||||||| || |||||||| Sbjct: 41935 atccacgccaggcttcacgcgcaggccct 41963
>emb|CR376852.17| Zebrafish DNA sequence from clone CH211-181B18 in linkage group 21, complete sequence Length = 157717 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 445 gttcatgactatgcaaagcag 465 ||||||||||||||||||||| Sbjct: 801 gttcatgactatgcaaagcag 821 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 100,581,887 Number of extensions: 5267512 Number of successful extensions: 89972 Number of sequences better than 10.0: 45 Number of HSP's gapped: 89962 Number of HSP's successfully gapped: 59 Length of query: 702 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 680 Effective length of database: 18,508,616,841 Effective search space: 12585859451880 Effective search space used: 12585859451880 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
