ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf161k12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1P09854:DPOL_HHV1S DNA polymerase - Human herpesvirus 1 (strain S... 33 1.2
2P04293:DPOL_HHV11 DNA polymerase - Human herpesvirus 1 (strain 1... 33 1.2
3Q8CDC7:ZBTB9_MOUSE Zinc finger and BTB domain-containing protein... 32 3.5
4Q99PU7:BAP1_MOUSE Ubiquitin carboxyl-terminal hydrolase BAP1 - M... 31 4.6
5Q92560:BAP1_HUMAN Ubiquitin carboxyl-terminal hydrolase BAP1 - H... 31 4.6
6P07918:DPOL_HHV21 DNA polymerase - Human herpesvirus 2 (strain 1... 30 7.8
7P04292:DPOL_HHV1K DNA polymerase - Human herpesvirus 1 (strain K... 30 7.8

>P09854:DPOL_HHV1S DNA polymerase - Human herpesvirus 1 (strain SC16) (HHV-1) (Human|
            herpes simplex virus 1)
          Length = 1235
 Score = 33.1 bits (74), Expect = 1.2
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 68   QPAATEPFPSPAKRKTDTDSEISPVDPPAKAARP 169
            +PA     PSPAKR  +T    SP DPP  A++P
Sbjct: 1104 EPAPPAALPSPAKRPRETP---SPADPPGGASKP 1134



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>P04293:DPOL_HHV11 DNA polymerase - Human herpesvirus 1 (strain 17) (HHV-1) (Human|
            herpes simplex virus 1)
          Length = 1235

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 68   QPAATEPFPSPAKRKTDTDSEISPVDPPAKAARP 169
            +PA     PSPAKR  +T    SP DPP  A++P
Sbjct: 1104 EPAPPAALPSPAKRPRETP---SPADPPGGASKP 1134



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>Q8CDC7:ZBTB9_MOUSE Zinc finger and BTB domain-containing protein 9 - Mus musculus|
           (Mouse)
          Length = 459

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 59  GQSQPAATEPFPSPAKRKTDTDSEISPVDPPA 154
           G SQ   + P P+PA     ++ E S VDPPA
Sbjct: 235 GVSQACGSHPLPTPALPSKPSEDESSTVDPPA 266



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>Q99PU7:BAP1_MOUSE Ubiquitin carboxyl-terminal hydrolase BAP1 - Mus musculus (Mouse)|
          Length = 728

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +2

Query: 71  PAATEPFPSPAKRKTDTDSEI-----SPVDPPAKAARP 169
           P  ++P P+P+   TDT SEI     SP+  P ++A P
Sbjct: 478 PTHSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANP 515



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>Q92560:BAP1_HUMAN Ubiquitin carboxyl-terminal hydrolase BAP1 - Homo sapiens (Human)|
          Length = 729

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
 Frame = +2

Query: 71  PAATEPFPSPAKRKTDTDSEI-----SPVDPPAKAARP 169
           P  ++P P+P+   TDT SEI     SP+  P ++A P
Sbjct: 479 PTHSQPSPTPSNESTDTASEIGSAFNSPLRSPIRSANP 516



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>P07918:DPOL_HHV21 DNA polymerase - Human herpesvirus 2 (strain 186) (HHV-2) (Human|
            herpes simplex virus 2)
          Length = 1240

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 68   QPAATEPFPSPAKRKTDTDSEISPVDPPAKAARP 169
            +PA     PSPAKR  +T S     DPP  A++P
Sbjct: 1109 EPAPPAALPSPAKRPRETPSH---ADPPGGASKP 1139



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>P04292:DPOL_HHV1K DNA polymerase - Human herpesvirus 1 (strain KOS) (HHV-1) (Human|
            herpes simplex virus 1)
          Length = 1235

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 68   QPAATEPFPSPAKRKTDTDSEISPVDPPAKAARP 169
            +PA     PSPAKR  +T S     DPP  A++P
Sbjct: 1104 EPAPPAALPSPAKRPRETPSH---ADPPGGASKP 1134


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 79,304,951
Number of extensions: 1201056
Number of successful extensions: 4169
Number of sequences better than 10.0: 7
Number of HSP's gapped: 4163
Number of HSP's successfully gapped: 7
Length of query: 254
Length of database: 100,686,439
Length adjustment: 111
Effective length of query: 143
Effective length of database: 70,239,694
Effective search space: 10044276242
Effective search space used: 10044276242
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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