ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf155a18 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os04g54610:12004.t04933:unspliced-genomic hypothetical protein| Length = 968 Score = 57.9 bits (120), Expect = 6e-08 Identities = 25/36 (69%), Positives = 27/36 (75%) Frame = +3 / +1 Query: 111 MANFAAQLKERFLGLVDRVTGCGRGAAAKEEAANTK 218 MA FAAQLK+RFLGLV+RV GCGRGA K TK Sbjct: 1 MAKFAAQLKDRFLGLVERVAGCGRGAGDKGVKEPTK 108 Score = 49.2 bits (101), Expect = 3e-05 Identities = 21/24 (87%), Positives = 21/24 (87%) Frame = -1 / -1 Query: 184 PRPQPVTRSTRPRNLSLSWAAKLA 113 PRPQP TRSTRPRNLSLS AA LA Sbjct: 74 PRPQPATRSTRPRNLSLS*AANLA 3 Score = 44.1 bits (90), Expect = 8e-04 Identities = 17/24 (70%), Positives = 21/24 (87%) Frame = -3 / -3 Query: 182 ATAAGDAVDEAEEPLLELGCEVGH 111 A AAGDA+DEAE+P+LEL E+GH Sbjct: 72 AAAAGDALDEAEKPVLELSSELGH 1
>LOC_Os04g54620:12004.t04934:unspliced-genomic expressed protein| Length = 938 Score = 49.6 bits (102), Expect = 2e-05 Identities = 21/28 (75%), Positives = 25/28 (89%) Frame = -1 / -2 Query: 184 PRPQPVTRSTRPRNLSLSWAAKLAMGSS 101 PRP PVTRSTRP+N+SLS AA LAMG++ Sbjct: 229 PRP*PVTRSTRPKNMSLSCAA*LAMGAA 146 Score = 48.7 bits (100), Expect = 3e-05 Identities = 19/26 (73%), Positives = 23/26 (88%) Frame = +3 / +3 Query: 108 PMANFAAQLKERFLGLVDRVTGCGRG 185 PMA++AAQLK+ F GLV+RVTG GRG Sbjct: 153 PMASYAAQLKDMFFGLVERVTGYGRG 230 Score = 37.7 bits (76), Expect = 0.071 Identities = 16/25 (64%), Positives = 19/25 (76%) Frame = -3 / -1 Query: 182 ATAAGDAVDEAEEPLLELGCEVGHG 108 A+ AGDA+DEAEE +LEL GHG Sbjct: 227 ASVAGDALDEAEEHVLELRRVAGHG 153
>LOC_Os08g07490:12008.t00638:unspliced-genomic expressed protein| Length = 1705 Score = 43.7 bits (89), Expect = 0.001 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = +3 / +2 Query: 111 MANFAAQLKERFLGLVDRVTGCGRGA 188 MA AAQLK++F GL+ R+T CGR A Sbjct: 134 MAKLAAQLKDKFCGLIGRITSCGRAA 211 Score = 38.6 bits (78), Expect = 0.038 Identities = 18/26 (69%), Positives = 19/26 (73%) Frame = -1 / -2 Query: 181 RPQPVTRSTRPRNLSLSWAAKLAMGS 104 RPQ V R RP+NLSLS AA LAM S Sbjct: 204 RPQLVMRPMRPQNLSLSCAASLAMAS 127 Score = 37.3 bits (75), Expect = 0.097 Identities = 16/25 (64%), Positives = 18/25 (72%) Frame = -3 / -1 Query: 182 ATAAGDAVDEAEEPLLELGCEVGHG 108 A AGDA DEA E +LEL E+GHG Sbjct: 205 AATAGDAADEAAELVLELRGELGHG 131
>LOC_Os06g38080:12006.t03504:unspliced-genomic von Willebrand factor type A domain containing protein, expressed| Length = 3622 Score = 34.5 bits (69), Expect = 0.65 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -1 / -3 Query: 373 MACTERTRHTNPQRQIHLQRHQHA 302 +A R R + QRQ+HLQRH+HA Sbjct: 3017 VAAALRQRDRHLQRQVHLQRHEHA 2946
>LOC_Os05g39310:12005.t03473:unspliced-genomic pyruvate decarboxylase isozyme 1, putative, expressed| Length = 2912 Score = 33.6 bits (67), Expect = 1.2 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = -1 / +1 Query: 409 LQETTRIRKFNYMACTERTRHTNPQRQIHLQRHQH 305 L E R + N + CT RH P+R+ RH+H Sbjct: 697 LDEFRRTPELNRVRCTHAGRH*QPRRRARADRHRH 801
>LOC_Os05g48390:12005.t04273:unspliced-genomic ubiquitin conjugating enzyme, putative, expressed| Length = 7946 Score = 32.7 bits (65), Expect = 2.3 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +2 / -3 Query: 353 GSFSACHVIKLADSCCFL*GCRFVVQSPSVNF 448 GSF+ H+ SCC L GC+F NF Sbjct: 2121 GSFTTLHICICMVSCCLLIGCKFYQNIIEKNF 2026
>LOC_Os12g42860:12012.t03959:unspliced-genomic cupin, RmlC-type, putative, expressed| Length = 2711 Score = 32.2 bits (64), Expect = 3.2 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = +2 / +2 Query: 308 LMALKMYLSLRICVSGSFSACHVIKLADSCCFL 406 L +YLSL C S+ H + DSCCFL Sbjct: 77 LFLAPVYLSLPRCFLHLSSSTHCFLILDSCCFL 175
>LOC_Os12g35100:12012.t03198:unspliced-genomic transposon protein, putative, Mutator sub-class| Length = 3595 Score = 31.3 bits (62), Expect = 6.0 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = +3 / +3 Query: 342 FVCLVLSVHAM*LNLRILVVSCKGAALLCNLPLLISRDEILCYL 473 +VC++ + M L L LV + A LLCNL + I+ +L YL Sbjct: 78 YVCVLRNSF*MFLILVQLVQESEFAGLLCNLSMCIANHILLAYL 209
>LOC_Os08g34770:12008.t03217:unspliced-genomic transposon protein, putative, Mutator sub-class| Length = 3596 Score = 31.3 bits (62), Expect = 6.0 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = +3 / +3 Query: 342 FVCLVLSVHAM*LNLRILVVSCKGAALLCNLPLLISRDEILCYL 473 +VC++ + M L L LV + A LLCNL + I+ +L YL Sbjct: 78 YVCVLRNSF*MFLILVQLVQESEFAGLLCNLSMCIANHILLAYL 209
>LOC_Os03g28930:12003.t02512:unspliced-genomic transposon protein, putative, Mutator sub-class| Length = 3595 Score = 31.3 bits (62), Expect = 6.0 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = +3 / +3 Query: 342 FVCLVLSVHAM*LNLRILVVSCKGAALLCNLPLLISRDEILCYL 473 +VC++ + M L L LV + A LLCNL + I+ +L YL Sbjct: 78 YVCVLRNSF*MFLILVQLVQESEFAGLLCNLSMCIANHILLAYL 209
>LOC_Os03g55600:12003.t04821:unspliced-genomic serine/threonine-protein kinase SAPK8, putative, expressed| Length = 5559 Score = 24.9 bits (48), Expect(2) = 7.1 Identities = 6/10 (60%), Positives = 9/10 (90%) Frame = +3 / +3 Query: 324 CICLCGFVCL 353 C+C+C FVC+ Sbjct: 4272 CVCVCVFVCV 4301 Score = 23.1 bits (44), Expect(2) = 7.1 Identities = 12/40 (30%), Positives = 18/40 (45%) Frame = +3 / +1 Query: 399 VSCKGAALLCNLPLLISRDEILCYLDAGREVWCAVTYVRI 518 V C LL + + E L G V+C++ YVR+ Sbjct: 4303 VLCLCVRLLLCARVCVINTENLSAYVVGVHVFCSIIYVRV 4422
>LOC_Os11g28360:12011.t02449:unspliced-genomic ubiquitin carboxyl-terminal hydrolase 5, putative, expressed| Length = 4457 Score = 30.9 bits (61), Expect = 8.3 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 / +3 Query: 330 CLCGFVCLVLSVHAM*LNLRILVVS 404 C C F+C LSVH + L + L+ S Sbjct: 4224 CFCSFLCQPLSVHMVVLEINFLISS 4298
>LOC_Os02g34560:12002.t03095:unspliced-genomic neutral/alkaline invertase, putative, expressed| Length = 4031 Score = 27.2 bits (53), Expect(2) = 8.4 Identities = 10/28 (35%), Positives = 14/28 (50%) Frame = +2 / +2 Query: 323 MYLSLRICVSGSFSACHVIKLADSCCFL 406 M L L +C+S F + AD CC + Sbjct: 1211 MRLILSLCLSEGFDTFPTLLCADGCCMI 1294 Score = 24.9 bits (48), Expect(2) = 8.4 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = +1 / +2 Query: 391 FLLFLVRVPLCCAISLC*FLGTKSCVILTPAVRFGVLS 504 FLL V LCC + + L K C + V F LS Sbjct: 2108 FLLLTPVVDLCCRVFMGTLLRFKPCSLWH*GVLFNCLS 2221
>LOC_Os01g09800:12001.t00857:unspliced-genomic regulatory protein NPR1, putative, expressed| Length = 4821 Score = 27.2 bits (53), Expect(2) = 9.8 Identities = 11/36 (30%), Positives = 16/36 (44%) Frame = +3 / -2 Query: 147 LGLVDRVTGCGRGAAAKEEAANTKPAMKEHVEIRSR 254 L + CG G AA+E+AA EH + + Sbjct: 434 LAAILAAAACGGGGAAREDAAQEGAPRGEHAAVHQQ 327 Score = 24.9 bits (48), Expect(2) = 9.8 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = +2 / -1 Query: 257 SQRVRWIRGWS 289 S+R RW RGWS Sbjct: 159 SRRTRW*RGWS 127 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 203,329,210 Number of extensions: 2797702 Number of successful extensions: 12666 Number of sequences better than 10.0: 14 Length of query: 200 Length of database: 55,613,886 Length adjustment: 48 Effective length of query: 152 Effective length of database: 52,912,542 Effective search space: 8042706384 Effective search space used: 8042706384 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
