ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf152c07 |
|---|---|
| Clone Library Name | barley_pub |
>P48553:TMEM1_HUMAN Transmembrane protein 1 - Homo sapiens (Human)| Length = 1259 Score = 102 bits (253), Expect = 2e-20 Identities = 101/425 (23%), Positives = 184/425 (43%), Gaps = 22/425 (5%) Frame = +1 Query: 259 IKSSSDRIVIAVEDVSDLWLNVKDSFKQRLPVKKA-CLNNKARNPVLVENLPAEFIQTTD 435 I + ++ ++ +L+ +V + Q+LP + + R P ++ +L + F+Q + Sbjct: 12 IYTMENKPIVTCAGDQNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMI-HLESNFVQFKE 70 Query: 436 SRLRSRFPQEQYLFWFREPYATVVLVTCEDLDEFKTILKPRL----KLIVQNDEREWFIV 603 L P+E P+ + C D + +K +K L ++ + +W IV Sbjct: 71 ELL----PKEGNKALLTFPFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIV 126 Query: 604 FVSKAHPSNDQATKMAK-KVYARLEADFNTKKRERCCKFDLHGPDD----EFWDDFDSKM 768 V ++ + + + ++ DF K+ +RC D E W+ F +K+ Sbjct: 127 IVENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKL 186 Query: 769 VDCIRNTLDRRVQFYEEENRRLSEQRFTPIWNFCNFFILKESLAFMFEVTNLHEDSLREY 948 + + + + +E++ R L E+R P W+FC +F+++E LAF+FE+ ED+L +Y Sbjct: 187 RTLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFMVQEELAFVFEMLQQFEDALVQY 246 Query: 949 DELELCYSESVNLPGKPREFGGLDTGD------------DQAALLNPGFKALTQIVQDDV 1092 DEL+ +S+ V FG D + + L P + +Q Sbjct: 247 DELDALFSQYV------VNFGAGDGANWLTFFCQPVKSWNGLILRKPIDMEKRESIQRRE 300 Query: 1093 FREFEFRQYIFACQAKLLFKLSRPVEVAARGYAFVVSFSKTLALHENALPFCFREVWVIT 1272 + R Y+F+ Q LL L RP EVA R + + + L L E ++P + WV Sbjct: 301 ATLLDLRSYLFSRQCTLLLFLQRPWEVAQRALELLHNCVQELKLLEVSVPPGALDCWVFL 360 Query: 1273 ACLGLIKSTSTQYDGGVVAIDSEKEFYRLQGDLYSLCRAKFMRLAYLIGYGVEIEKSPVN 1452 +CL +++ + +G + G L+S K L YL G+ EK P N Sbjct: 361 SCLEVLQ----RIEGCCDRAQIDSNIAHTVG-LWSYATEKLKSLGYLC--GLVSEKGP-N 412 Query: 1453 SASLS 1467 S L+ Sbjct: 413 SEDLN 417 Score = 51.2 bits (121), Expect = 4e-05 Identities = 109/493 (22%), Positives = 181/493 (36%), Gaps = 17/493 (3%) Frame = +1 Query: 2446 DEGLKAIRSTDARVLVPGRNIITFDIPPQKPGSYVLGALTGQIGKLSFRSHGFSQDSPVD 2625 +EG +R + L PG N ITF ++PG+Y L L +G + F P+ Sbjct: 721 EEGAHVLRCSHV-TLEPGANQITFRTQAKEPGTYTLRQLCASVGSVWFV---LPHIYPIV 776 Query: 2626 TDEFMSFEKPTRPVLKVRKPRALVDITPAVSSALLMNELQWIGLIVKPIDYSLKGGILHI 2805 + S E P L V ++ +LL Q + V Y++K G Sbjct: 777 QYDVYSQE----PQLHVEP----------LADSLLAGIPQRVKFTVTTGHYTIKNG---- 818 Query: 2806 DAGAELKIEESQMIEIESYRSDGDHSGNLD-ASKALSRSTDTGRVEKVPIGNGKI-ELPD 2979 +L E+ +I ++ +S + +S+A R + +V + + + + Sbjct: 819 -DSLQLSNAEAMLILCQAESRAVVYSNTREQSSEAALRIQSSDKVTSISLPVAPAYHVIE 877 Query: 2980 WASDVTTLVWFPVRAIDDTIAKGTSPASPQKHSIVDGMRMIALKLEFGAFHN-QIFERTI 3156 + +V +L P + + P K G M+ + I+ I Sbjct: 878 FELEVLSLPSAPALGGESDMLGMAEPHRKHKDKQRTGRCMVTTDHKVSIDCPWSIYSTVI 937 Query: 3157 AVHFTNPFHVSTRVVDKCNDGTLLLQVILHSEVKATLHVKDVLLDLQAGFEHLGKGDGRP 3336 A+ F+ PF + ++ + + V SE LD Q +L Sbjct: 938 ALTFSVPFRTTHSLLSSGTRKYVQVCVQNLSE-----------LDFQLSDSYLVDTGDST 986 Query: 3337 TSSLFPLVIAPS----SKAGILFVIRLSGTKDLDELEQADSMLNIKYGISGDRATGAHSP 3504 L PL SK + FV L T E+ L+ ++ + A+ Sbjct: 987 DLQLVPLNTQSQQPIYSKQSVFFVWELKWT------EEPPPSLHCRFSVGFSPASEEQLS 1040 Query: 3505 VPVKPDDSEELLFKISLKLKRPVLDPCLAVGFLPFSTDCLRVGQLVNMKWRVERLKDL-- 3678 + +KP E FK+ L A F P + R G L +++ + RL DL Sbjct: 1041 ISLKPYTYE---FKVENFF---TLYNVKAEIFPPSGMEYCRTGSLCSLEVLITRLSDLLE 1094 Query: 3679 ---EEASLSDDE-----ILYQVDANPQNWMVAGRKSGHISFSETQGSRIEIAVTCVPLVS 3834 +EA DE ++Y+V N NW V G+ G IS + + + +PL + Sbjct: 1095 VDKDEALTESDEHFSTKLMYEVVDNSSNWAVCGKSCGVISMPVAARATHRVHMEVMPLFA 1154 Query: 3835 GYVHPPQLGLPDV 3873 GY L LPDV Sbjct: 1155 GY-----LPLPDV 1162 Score = 46.2 bits (108), Expect = 0.001 Identities = 39/142 (27%), Positives = 60/142 (42%) Frame = +1 Query: 1888 SLSSPEEFENRYMELTKGAADNYHRSWWKRHGVVLDGEIAAIYFKHGNYDLAAKSYEKVC 2067 +LSS E FE Y++L+ + Y R + ++A Y + A + Sbjct: 447 ALSSVEAFEKHYLDLSHATIEMYTSIGRIRSAKFVGKDLAEFYMRKKAPQKAEIYLQGAL 506 Query: 2068 ALYSAEGWEELLADVLPDLAECQKILNDEAGYLASCVKLLSIESSLFSSKERQAFQSEVV 2247 Y AEGW + LAECQK L YL + LL+ + L + +ER+ F E++ Sbjct: 507 KNYLAEGWALPITHTRKQLAECQKHLGQIENYLQTS-SLLASDHHL-TEEERKHFCQEIL 564 Query: 2248 RLAHSEMSHPVPLDVSSLITFA 2313 A P V + +FA Sbjct: 565 DFASQPSDSPGHKIVLPMHSFA 586
>Q9VFB7:TMEM1_DROME Protein TMEM1 homolog - Drosophila melanogaster (Fruit fly)| Length = 1145 Score = 71.2 bits (173), Expect = 3e-11 Identities = 66/267 (24%), Positives = 112/267 (41%), Gaps = 22/267 (8%) Frame = +1 Query: 490 PYATVVLVTCEDLDEFKTILKPR----LKLIVQNDEREWFIVFVSKAHPSNDQATKMAKK 657 P + + C D+D +K ++ LK + +W I+ V + Sbjct: 73 PILHIFVTECNDVDTYKATIREAIDIWLKTLTSYGVSDWMILLVETLDMRKTKNFMPRTT 132 Query: 658 VYARLEADFNTKKRERCCKFDLHGPDDEFWDDFDSKMVDCIR----NTLDRRVQFYEEEN 825 V ++ DF TK +RC ++ + +V IR + +R + YEE Sbjct: 133 VLDKIRLDFGTKNDDRCISVLNPAKFEQKSTESFRCLVQRIRFLMLTSYNRNIVKYEELI 192 Query: 826 RRLSEQRFTPIWNFCNFFILKESLAFMFEVTNLHEDSLREYDELELCYSESVNLPG---- 993 R E+R W+F +F ++E LA +FE L ++L +YDEL+ +S+ + G Sbjct: 193 RSKREKRNIEGWDFRQYFFMQEDLALIFEKLELPTEALIQYDELDAMFSQFITHTGLNEK 252 Query: 994 --------KPRE-FGGLD-TGDDQAALLNPGFKALTQIVQDDVFREFEFRQYIFACQAKL 1143 KP + F G+ T D+ + N ++D+ EFR Y+F QA L Sbjct: 253 QQWLNHFRKPLDAFHGICLTRADKFEMRNK--------IRDEGVSLLEFRNYLFERQAYL 304 Query: 1144 LFKLSRPVEVAARGYAFVVSFSKTLAL 1224 L + E+A R F+ S + + L Sbjct: 305 LLTCNDIPEIAKRLLNFLFSTLREVEL 331 Score = 35.8 bits (81), Expect = 1.5 Identities = 22/96 (22%), Positives = 38/96 (39%) Frame = +1 Query: 1888 SLSSPEEFENRYMELTKGAADNYHRSWWKRHGVVLDGEIAAIYFKHGNYDLAAKSYEKVC 2067 +L S + F+ Y+EL + A Y R ++ ++ Y A + + Sbjct: 449 ALGSNQAFQKLYLELAELAISTYKHVTRLRSARLVGLDLGNFYCALNEPHKAVGFFTDLL 508 Query: 2068 ALYSAEGWEELLADVLPDLAECQKILNDEAGYLASC 2175 AE W L + L +LA C + + D Y +C Sbjct: 509 RELKAENWHMLSSQTLLELANCYRKMGDSLAYTKTC 544
>Q7YRG9:RNAS9_SAIBB Ribonuclease-like protein 9 precursor - Saimiri boliviensis| boliviensis (Bolivian squirrel monkey) Length = 206 Score = 35.4 bits (80), Expect = 2.0 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = +1 Query: 718 DLHGPDDEFWDDFDSKMVDCIRNTLDRRVQFYEEENRRLSEQRFTPIWN--FCNFFILKE 891 D + P +DF+ +V+ ++T R E+ RR+ P+ + +CN+ I+++ Sbjct: 33 DFYFPVSRTEEDFEDFLVE-FQSTGPTRPPTKEKVKRRILVNPGMPLGDSGYCNYQIMRK 91 Query: 892 SLAFMFEVTNLHEDSLREYDELE-LCYSESV 981 ++ + + H L +YDELE CY+ V Sbjct: 92 NVYYKYSCVTEHYFLLMQYDELEKTCYNRFV 122
>Q8IUR5:TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 - Homo sapiens| (Human) Length = 774 Score = 34.7 bits (78), Expect = 3.4 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 9/127 (7%) Frame = +1 Query: 1966 WWKR-----HGVVLDGEIAAIYFKHGNYDLAAKSYEKVCALYSAEGWEEL-LADVLPDLA 2127 W+KR H + + A+Y+ G Y+ A + Y++ AL ++ L LA VL + Sbjct: 564 WYKRALQVAHKAEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMG 623 Query: 2128 ---ECQKILNDEAGYLASCVKLLSIESSLFSSKERQAFQSEVVRLAHSEMSHPVPLDVSS 2298 E +K+ N C++ + S+++S +E + + A ++ P +S Sbjct: 624 QTKEAEKMTNHIVSEETGCLECYRLLSAIYSKQENHDKALDAIDKA-LQLKPKDPKVISE 682 Query: 2299 LITFAGN 2319 L GN Sbjct: 683 LFFTKGN 689
>Q7YRG7:RNAS9_CEBCA Ribonuclease-like protein 9 precursor - Cebus capucinus| (White-faced sapajou) Length = 205 Score = 34.3 bits (77), Expect = 4.4 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = +1 Query: 718 DLHGPDDEFWDDFDSKMVDCIRNTLDRRVQFYEEENRRLSEQRFTPIWN--FCNFFILKE 891 D + P +DF+ MV+ ++T R E+ RR+ P+ + +CN+ I+++ Sbjct: 31 DFYFPAYRDKEDFEDFMVE-FQSTGPTRPPTKEKVKRRILVNPGMPLGDSGYCNYQIMRK 89 Query: 892 SLAFMFEVTNLHEDSLREYDELE-LCYSESV 981 ++ + + H L +YDEL+ CY+ V Sbjct: 90 NVYYKYSCVTEHYFLLMQYDELQKTCYNRFV 120
>Q7YRG8:RNAS9_CEBAL Ribonuclease-like protein 9 precursor - Cebus albifrons| (White-fronted capuchin) Length = 205 Score = 34.3 bits (77), Expect = 4.4 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 3/91 (3%) Frame = +1 Query: 718 DLHGPDDEFWDDFDSKMVDCIRNTLDRRVQFYEEENRRLSEQRFTPIWN--FCNFFILKE 891 D + P +DF+ MV+ ++T R E+ RR+ P+ + +CN+ I+++ Sbjct: 31 DFYFPAYSDKEDFEDFMVE-FQSTGPTRPPTKEKVKRRILVNPGMPLGDSGYCNYQIMRK 89 Query: 892 SLAFMFEVTNLHEDSLREYDELE-LCYSESV 981 ++ + + H L +YDEL+ CY+ V Sbjct: 90 NVYYKYSCVTEHYFLLMQYDELQKTCYNRFV 120
>Q94071:LIPB_CAEEL Liprin-beta - Caenorhabditis elegans| Length = 920 Score = 33.9 bits (76), Expect = 5.8 Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 4/191 (2%) Frame = +1 Query: 1714 HSKVSPNKSSSNLMTRTMSGPATSETSLPVDRPMRLSEIHVA-AEHALKQTISDPDFMTS 1890 H +S +K +++LMT T +LP+ +++ A A ++S M++ Sbjct: 114 HRSLSDSKYTASLMT-------TGVPTLPLLSMTPFNQLQSRDARGASWISLSPSPSMST 166 Query: 1891 LSSPEEFENRYMELTKGAADNYHRSWWKRHGVVLDGEIAAIYFKHGNYDLAAKSYEKVCA 2070 +S PE Y EL D HR R + L +++ + + G K E V A Sbjct: 167 VSCPE-----YPELQ----DKLHRLAMARDSLQL--QVSVLSEQVGAQKEKIKDLETVIA 215 Query: 2071 LY--SAEGWEELLADVLPDLAECQKILNDEAGYLASCVKLLSIESSLFSSKERQAFQSE- 2241 L + EELL D + ECQ++ + + LA L +++ ER+ ++E Sbjct: 216 LKRNNLTSTEELLQDKYHRIDECQELESKKMDLLAEVSSL----KLRYATLEREKNETEK 271 Query: 2242 VVRLAHSEMSH 2274 +RL+ +EM H Sbjct: 272 KLRLSQNEMDH 282
>O66932:PHSG_AQUAE Glycogen phosphorylase - Aquifex aeolicus| Length = 692 Score = 33.5 bits (75), Expect = 7.6 Identities = 14/36 (38%), Positives = 24/36 (66%) Frame = +1 Query: 556 RLKLIVQNDEREWFIVFVSKAHPSNDQATKMAKKVY 663 RLK IV + ER I+F KAHP++ + K+ ++++ Sbjct: 501 RLKKIVNDSERPVQIIFAGKAHPADIEGKKIIQRIF 536
>Q09499:IRE1_CAEEL Serine/threonine-protein kinase/endoribonuclease ire-1 precursor -| Caenorhabditis elegans Length = 967 Score = 33.1 bits (74), Expect = 9.9 Identities = 19/64 (29%), Positives = 31/64 (48%) Frame = +1 Query: 3586 LAVGFLPFSTDCLRVGQLVNMKWRVERLKDLEEASLSDDEILYQVDANPQNWMVAGRKSG 3765 L G PF R +VN ++ + +L DL++ SL+DD I ++ P + + A Sbjct: 715 LTSGTHPFGKSLHRQANIVNGEYTLNKLADLDDWSLADDLISSMLNVEPLHRLTADAVLN 774 Query: 3766 HISF 3777 H F Sbjct: 775 HPFF 778
>Q8EDG1:CDD_SHEON Cytidine deaminase - Shewanella oneidensis| Length = 296 Score = 33.1 bits (74), Expect = 9.9 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%) Frame = -2 Query: 3316 LGAQIQLVGP-IIHPLHAE*PSLQNAILPAEVEFHHCTCQQHVCSHGMD**NVRQWSFQI 3140 +GA ++L G + H +HAE ++ +A L E + C H RQ+ ++ Sbjct: 85 MGANLELPGEALFHSVHAEQSAISHAWLSGESQIVDMIVNASPCGH------CRQFMNEL 138 Query: 3139 FDYGKLQIQA*EQSFSSHLLCY 3074 D G+++I Q SHLL Y Sbjct: 139 VDGGQIKIHLPSQ--DSHLLSY 158 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 722,444,275 Number of extensions: 16175739 Number of successful extensions: 43455 Number of sequences better than 10.0: 10 Number of HSP's gapped: 43424 Number of HSP's successfully gapped: 13 Length of query: 1378 Length of database: 100,686,439 Length adjustment: 126 Effective length of query: 1252 Effective length of database: 66,125,269 Effective search space: 82788836788 Effective search space used: 82788836788 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
