ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf151p08 |
|---|---|
| Clone Library Name | barley_pub |
>Q3SZL5:PIGS_BOVIN GPI transamidase component PIG-S - Bos taurus (Bovine)| Length = 555 Score = 33.5 bits (75), Expect(2) = 0.009 Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 1/49 (2%) Frame = +1 Query: 2248 WGGVVIWNPPGCSLGSKEVHGTRRQMSSQ-ELMETLEIFIGQLRQLFGL 2391 WGG++++N + K +G++ + + ++M +E+F+ QLR LFG+ Sbjct: 356 WGGIMVYN-----VDPKAYNGSQLPVRVEVDMMRVMEVFLAQLRLLFGI 399 Score = 28.1 bits (61), Expect(2) = 0.009 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +2 Query: 2093 IPSARECPLYLQLPDGELSKTNAFISP 2173 +P PLY+Q DG TNAF SP Sbjct: 328 VPELAHSPLYIQDKDGAPVATNAFHSP 354 Score = 32.3 bits (72), Expect = 9.8 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = +2 Query: 1418 RILTPVVEALRPIADINIESQVLYHTPKSSYSYSDDKLGGNVLSMGDIPFFVNSNEWHLD 1597 R + P + AL + +++SQ+LY+ D L+ +P +N E L Sbjct: 253 RYVQPFLSALSAAGNFSVDSQILYYAVLGVNPRFDSASSSYYLAAHSLPHVINPVESRLG 312 Query: 1598 TSISATGRSKVLQFVVYV 1651 + SA VL F++YV Sbjct: 313 S--SAASLYPVLNFLLYV 328
>Q10351:PIGS_SCHPO GPI transamidase component PIG-S homolog - Schizosaccharomyces pombe| (Fission yeast) Length = 554 Score = 41.6 bits (96), Expect = 0.016 Identities = 26/85 (30%), Positives = 42/85 (49%) Frame = +2 Query: 1397 EFKNIGERILTPVVEALRPIADINIESQVLYHTPKSSYSYSDDKLGGNVLSMGDIPFFVN 1576 + +N ++ P++E L +A +NIE+Q+ Y + DDK D+P VN Sbjct: 259 DIENAIQKYFNPLIEQLASLAKLNIETQIQYFVEDAEAYIKDDKF---CTKHADLPNLVN 315 Query: 1577 SNEWHLDTSISATGRSKVLQFVVYV 1651 + E +L S S R + FV+YV Sbjct: 316 NFEKYL--SFSPHIREPTIHFVLYV 338
>Q96S52:PIGS_HUMAN GPI transamidase component PIG-S - Homo sapiens (Human)| Length = 555 Score = 30.0 bits (66), Expect(2) = 0.086 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Frame = +1 Query: 2248 WGGVVIWNPPGCSLGSKEVHGTRRQMSSQ-ELMETLEIFIGQLRQLFGL 2391 WGG++++N + SK + + + + +++ +E+F+ QLR LFG+ Sbjct: 356 WGGIMVYN-----VDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLFGI 399 Score = 28.1 bits (61), Expect(2) = 0.086 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +2 Query: 2093 IPSARECPLYLQLPDGELSKTNAFISP 2173 +P PLY+Q DG TNAF SP Sbjct: 328 VPELAHSPLYIQDKDGAPVATNAFHSP 354 Score = 33.9 bits (76), Expect = 3.4 Identities = 22/78 (28%), Positives = 35/78 (44%) Frame = +2 Query: 1418 RILTPVVEALRPIADINIESQVLYHTPKSSYSYSDDKLGGNVLSMGDIPFFVNSNEWHLD 1597 R + P + AL + +++SQ+LY+ D L M +P +N E L Sbjct: 253 RYVQPFLNALGAAGNFSVDSQILYYAMLGVNPRFDSASSSYYLDMHSLPHVINPVESRLG 312 Query: 1598 TSISATGRSKVLQFVVYV 1651 + SA VL F++YV Sbjct: 313 S--SAASLYPVLNFLLYV 328
>Q5XI31:PIGS_RAT GPI transamidase component PIG-S - Rattus norvegicus (Rat)| Length = 555 Score = 29.3 bits (64), Expect(2) = 0.14 Identities = 14/48 (29%), Positives = 29/48 (60%) Frame = +1 Query: 2248 WGGVVIWNPPGCSLGSKEVHGTRRQMSSQELMETLEIFIGQLRQLFGL 2391 WGG++++N + E+ R ++ ++ + +E+F+ QLR LFG+ Sbjct: 356 WGGIMVYNVDPKIYNASELP-VRVEV---DMAQVMEVFLAQLRLLFGI 399 Score = 28.1 bits (61), Expect(2) = 0.14 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +2 Query: 2093 IPSARECPLYLQLPDGELSKTNAFISP 2173 +P PLY+Q DG TNAF SP Sbjct: 328 VPELAHSPLYIQDKDGAPVATNAFHSP 354 Score = 32.7 bits (73), Expect = 7.5 Identities = 21/79 (26%), Positives = 36/79 (45%) Frame = +2 Query: 1415 ERILTPVVEALRPIADINIESQVLYHTPKSSYSYSDDKLGGNVLSMGDIPFFVNSNEWHL 1594 +R + P + L + +++SQ+LY+ D L+M +P +N E L Sbjct: 252 QRYVQPFLNRLSAAGNFSVDSQILYYAMLGVNPRFDPASSSYSLAMHSLPHVINPVESRL 311 Query: 1595 DTSISATGRSKVLQFVVYV 1651 + SA VL F++YV Sbjct: 312 GS--SAASLYPVLNFLLYV 328
>Q6PD26:PIGS_MOUSE GPI transamidase component PIG-S - Mus musculus (Mouse)| Length = 555 Score = 29.3 bits (64), Expect(2) = 0.14 Identities = 14/48 (29%), Positives = 29/48 (60%) Frame = +1 Query: 2248 WGGVVIWNPPGCSLGSKEVHGTRRQMSSQELMETLEIFIGQLRQLFGL 2391 WGG++++N + E+ R ++ +++ +E+F+ QLR LFG+ Sbjct: 356 WGGIMVYNVDPKIYNASELP-VRVEV---DMVRVMEVFLAQLRLLFGI 399 Score = 28.1 bits (61), Expect(2) = 0.14 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +2 Query: 2093 IPSARECPLYLQLPDGELSKTNAFISP 2173 +P PLY+Q DG TNAF SP Sbjct: 328 VPELAHSPLYIQDKDGAPVATNAFHSP 354 Score = 32.7 bits (73), Expect = 7.5 Identities = 21/79 (26%), Positives = 36/79 (45%) Frame = +2 Query: 1415 ERILTPVVEALRPIADINIESQVLYHTPKSSYSYSDDKLGGNVLSMGDIPFFVNSNEWHL 1594 +R + P + L + +++SQ+LY+ D L+M +P +N E L Sbjct: 252 QRFVQPFLNRLSVAGNFSVDSQILYYAMLGVNPRFDPASSSYSLAMHSLPHVINPVESRL 311 Query: 1595 DTSISATGRSKVLQFVVYV 1651 + SA VL F++YV Sbjct: 312 GS--SAASLYPVLHFLLYV 328
>O74718:ERF2_SCHPO Eukaryotic peptide chain release factor GTP-binding subunit -| Schizosaccharomyces pombe (Fission yeast) Length = 662 Score = 36.6 bits (83), Expect = 0.52 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +1 Query: 355 GRRCPPTQSPTCPAASNLTRPPFPVVSTRSSSTPALAPPSRPLP 486 G + P T P PAA + T P P V++ S+ APP + P Sbjct: 140 GTKAPTTTKPAAPAAQSKTETPAPKVTSESTKKETAAPPPQETP 183
>Q9VPQ6:USH_DROME Zinc finger protein ush - Drosophila melanogaster (Fruit fly)| Length = 1191 Score = 34.7 bits (78), Expect = 2.0 Identities = 22/46 (47%), Positives = 25/46 (54%) Frame = -3 Query: 961 KLNERTTFPSEPTGMNSPFPMPVSPSSIPPFMKYLMNTLLISDTAL 824 KL + T PSEP SP P P SP P + K +N LL SD AL Sbjct: 125 KLEQPATPPSEPEA--SPCPSP-SPCPTPKYPKVRLNALLASDPAL 167
>O04064:FLLH_POPTR Floricaula/leafy homolog - Populus trichocarpa (Western balsam| poplar) (Populus balsamifera subsp. trichocarpa) Length = 377 Score = 34.3 bits (77), Expect = 2.6 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 5/91 (5%) Frame = -2 Query: 554 DVPSSRRRGEEVVLGRDCQS*LIGKGRDGGARAGVEEDRVETTGKGGRVRLEA--AGQVG 381 D RRR +++ G + + L ++G + V++D+ E G GGR EA AG+ Sbjct: 120 DEEDPRRR--QLLSGDNNTNTLDALSQEGFSEEPVQQDK-EAAGSGGRGTWEAVAAGERK 176 Query: 380 DCVG---GQRRPVDLGGFEQQGQSYGERKRD 297 G GQR+ VDL G ++ G + ER+R+ Sbjct: 177 KQSGRKKGQRKVVDLDGDDEHGGAICERQRE 207
>P23471:PTPRZ_HUMAN Receptor-type tyrosine-protein phosphatase zeta precursor - Homo| sapiens (Human) Length = 2314 Score = 33.5 bits (75), Expect = 4.4 Identities = 39/127 (30%), Positives = 49/127 (38%), Gaps = 22/127 (17%) Frame = +3 Query: 402 QSHPPSFPCGLHAVFLHSGPGSPVASLADQLGLAISTQHH-----LLPASSTAGNISVSV 566 Q+HPP G H +PV S+ + L I+ H SS G + + Sbjct: 1302 QAHPPK---GRHVF------ATPVLSIDEPLNTLINKLIHSDEILTSTKSSVTGKVFAGI 1352 Query: 567 -TVQSD-----------GGCTSSTATASPWRCGSVTAVDSLRGDEVFDELLHSA-----L 695 TV SD G + SP R GSVT+ L + EL HSA L Sbjct: 1353 PTVASDTFVSTDHSVPIGNGHVAITAVSPHRDGSVTSTKLLFPSKATSELSHSAKSDAGL 1412 Query: 696 GGGDEDG 716 GG EDG Sbjct: 1413 VGGGEDG 1419
>Q9Y2X9:ZN281_HUMAN Zinc finger protein 281 - Homo sapiens (Human)| Length = 895 Score = 33.5 bits (75), Expect = 4.4 Identities = 19/42 (45%), Positives = 23/42 (54%) Frame = +1 Query: 361 RCPPTQSPTCPAASNLTRPPFPVVSTRSSSTPALAPPSRPLP 486 R PP S T PA S PP V+S+ +S+ PA PP P P Sbjct: 56 RLPPVTSFTRPAGS-AAPPPQCVLSSSTSAAPAAEPPPPPAP 96
>Q7ZW34:CNTN5_DANRE Contactin-5 precursor - Danio rerio (Zebrafish) (Brachydanio rerio)| Length = 1056 Score = 33.1 bits (74), Expect = 5.8 Identities = 21/66 (31%), Positives = 36/66 (54%) Frame = +1 Query: 2260 VIWNPPGCSLGSKEVHGTRRQMSSQELMETLEIFIGQLRQLFGLKPNYHAQGMDVATKFL 2439 V+W PP LG + + ++S + +E E+ G+ ++ G + N G+D T++L Sbjct: 850 VLWKPPSPGLGRPQGY----EVSFWKDVEQEEL--GKKKRTLGNETNMLLSGLDGNTQYL 903 Query: 2440 VSEKGF 2457 VS KGF Sbjct: 904 VSVKGF 909
>Q7UKY0:ILVC_RHOBA Ketol-acid reductoisomerase - Rhodopirellula baltica| Length = 334 Score = 32.7 bits (73), Expect = 7.5 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 5/52 (9%) Frame = -2 Query: 173 PGFLVR-----GGGLSPLVAVGEGGDERREDSSAPEDEGSGGVSSPAISDIF 33 PG LVR GGG+ L+A+GEG E + +G GG I F Sbjct: 134 PGHLVRSEYEKGGGVPALIALGEGASETTKQIGLAYAKGIGGTRGGVIETTF 185
>Q8TE58:ATS15_HUMAN ADAMTS-15 precursor - Homo sapiens (Human)| Length = 950 Score = 32.7 bits (73), Expect = 7.5 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -3 Query: 475 ATGEPGPEWRKTAWRPQGKEGG*DWRRRDRSAIASEGSGDRWISVD 338 A GEP P W +AW P K G ++RR + G G R ++ D Sbjct: 889 ACGEPCPTWELSAWSPCSKSCGRGFQRRSLKCV---GHGGRLLARD 931
>Q7A362:SRAP_STAAN Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain N315) Length = 2271 Score = 32.3 bits (72), Expect = 9.8 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 453 SGPGSPVASLADQLGLAISTQHHLLPASSTAGNISVSVTVQSDGGCTSS 599 SG S ASL+D AIST L ++ST+ +IS+S ++ + ++S Sbjct: 902 SGSSSTSASLSDSTSNAISTSTSLSESASTSDSISISNSIANSQSASTS 950
>Q99QY4:SRAP_STAAM Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain Mu50 / ATCC 700699) Length = 2271 Score = 32.3 bits (72), Expect = 9.8 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 453 SGPGSPVASLADQLGLAISTQHHLLPASSTAGNISVSVTVQSDGGCTSS 599 SG S ASL+D AIST L ++ST+ +IS+S ++ + ++S Sbjct: 902 SGSSSTSASLSDSTSNAISTSTSLSESASTSDSISISNSIANSQSASTS 950
>Q5HCP3:SRAP_STAAC Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain COL) Length = 2261 Score = 32.3 bits (72), Expect = 9.8 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 453 SGPGSPVASLADQLGLAISTQHHLLPASSTAGNISVSVTVQSDGGCTSS 599 SG S ASL+D AIST L ++ST+ +IS+S ++ + ++S Sbjct: 902 SGSSSTSASLSDSTSNAISTSTSLSESASTSDSISISNSIANSQSASTS 950
>Q2FUW1:SRAP_STAA8 Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain NCTC 8325) Length = 2271 Score = 32.3 bits (72), Expect = 9.8 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 453 SGPGSPVASLADQLGLAISTQHHLLPASSTAGNISVSVTVQSDGGCTSS 599 SG S ASL+D AIST L ++ST+ +IS+S ++ + ++S Sbjct: 902 SGSSSTSASLSDSTSNAISTSTSLSESASTSDSISISNSIANSQSASTS 950
>Q2FDK5:SRAP_STAA3 Serine-rich adhesin for platelets precursor - Staphylococcus aureus| (strain USA300) Length = 2271 Score = 32.3 bits (72), Expect = 9.8 Identities = 18/49 (36%), Positives = 29/49 (59%) Frame = +3 Query: 453 SGPGSPVASLADQLGLAISTQHHLLPASSTAGNISVSVTVQSDGGCTSS 599 SG S ASL+D AIST L ++ST+ +IS+S ++ + ++S Sbjct: 902 SGSSSTSASLSDSTSNAISTSTSLSESASTSDSISISNSIANSQSASTS 950
>P04922:CSP_PLAKU Circumsporozoite protein precursor - Plasmodium knowlesi (strain| nuri) Length = 351 Score = 32.3 bits (72), Expect = 9.8 Identities = 38/168 (22%), Positives = 62/168 (36%), Gaps = 10/168 (5%) Frame = -2 Query: 548 PSSRRRGEEVVLGRDCQS*LIG-KGRDGGARAGVEEDRVETTGKGGRVRLEAAG--QVGD 378 P++ GE+ G + G +G A AG E+ G GG AG Q Sbjct: 109 PAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGGEQP---AAGAGGEQPAAGAGGEQPAA 165 Query: 377 CVGGQRRPVDLGGFEQQGQSYGER-------KRDARGLHGEEKRKSLNYGRFGEVGVVPT 219 GG++ GG + + GE+ ++ A G GE+ G GE Sbjct: 166 GAGGEQPAAGAGGEQPAAGARGEQPAAGAGGEQPAAGAGGEQPAA----GARGEQPAAGA 221 Query: 218 RKERRTEAVRTRRFVPGFLVRGGGLSPLVAVGEGGDERREDSSAPEDE 75 E+ A R + PG + G G+G + + ++ P ++ Sbjct: 222 GGEQPAPAPRREQPAPGAVAGDGARGGNAGAGKGQGQNNQGANVPNEK 269
>Q00202:PACC_EMENI pH-response transcription factor pacC/RIM101 - Emericella nidulans| (Aspergillus nidulans) Length = 678 Score = 32.3 bits (72), Expect = 9.9 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%) Frame = +1 Query: 367 PPTQSPTCPAASNLTRPPF---PVVSTRSSSTPALAPPS 474 PPTQ P+ A + T P + SSSTPAL PPS Sbjct: 386 PPTQLPSAHATTQTTAGPIISNTSAHSPSSSTPALTPPS 424
>Q00203:PACC_ASPNG pH-response transcription factor pacC/RIM101 - Aspergillus niger| Length = 667 Score = 32.3 bits (72), Expect = 9.9 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +1 Query: 367 PPTQSPT--CPAASNLTRPPFPVVSTRSSSTPALAPPS 474 PPTQ P A S+ + P P + S+ TPAL PPS Sbjct: 382 PPTQLPPSHATATSSASMMPNPATHSPSTGTPALTPPS 419 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 444,482,895 Number of extensions: 10162808 Number of successful extensions: 29701 Number of sequences better than 10.0: 21 Number of HSP's gapped: 29589 Number of HSP's successfully gapped: 29 Length of query: 841 Length of database: 100,686,439 Length adjustment: 122 Effective length of query: 719 Effective length of database: 67,222,449 Effective search space: 48332940831 Effective search space used: 48332940831 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
