ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf161e22 |
|---|---|
| Clone Library Name | barley_pub |
>Q4WPE9:PRP28_ASPFU Pre-mRNA-splicing ATP-dependent RNA helicase prp28 - Aspergillus| fumigatus (Sartorya fumigata) Length = 796 Score = 33.1 bits (74), Expect = 1.00 Identities = 25/80 (31%), Positives = 34/80 (42%) Frame = +2 Query: 95 DPSTWRSPKQVREVHSPEEECQAVGFRLPRPKAMQSSPSSSPVAEDRRHRFDRSRPPPTM 274 D S +SP E + +E G P+AM++S + A R +D S PPP Sbjct: 134 DRSGTQSPSVYPETPNGDERSIPTG-----PRAMRNSEVPTGPAAMRNKTYDMSPPPP-- 186 Query: 275 QSAPFAPPCCSFSVNDGSDD 334 P SFS+ DG D Sbjct: 187 ------PKAMSFSLTDGKGD 200
>A1CX72:PRP28_NEOFI Pre-mRNA-splicing ATP-dependent RNA helicase prp28 - Neosartorya| fischeri (strain ATCC 1020 / DSM 3700 / NRRL 181) (Aspergillus fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181)) Length = 796 Score = 32.7 bits (73), Expect = 1.3 Identities = 25/80 (31%), Positives = 34/80 (42%) Frame = +2 Query: 95 DPSTWRSPKQVREVHSPEEECQAVGFRLPRPKAMQSSPSSSPVAEDRRHRFDRSRPPPTM 274 D S +SP E + +E G P+AM++S + A R +D S PPP Sbjct: 134 DRSGTQSPSVYSETPNGDERSIPTG-----PRAMRNSEVPTGPAAMRNKNYDMSPPPP-- 186 Query: 275 QSAPFAPPCCSFSVNDGSDD 334 P SFS+ DG D Sbjct: 187 ------PKPMSFSLTDGKGD 200
>P15711:104K_THEPA 104 kDa microneme/rhoptry antigen precursor - Theileria parva| Length = 924 Score = 32.3 bits (72), Expect = 1.7 Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Frame = +2 Query: 95 DPSTWRSPKQVREVHSPEEECQAVGFRLPRPKAMQSSP---SSSPVAEDRRHRFDRSRPP 265 DP R PK+ R+ SP A R P PK Q S S+SP RS PP Sbjct: 576 DPKHPRDPKEPRKSKSPRT---ASPTRRPSPKLPQLSKLPKSTSP----------RSPPP 622 Query: 266 PTMQSAPFAP 295 PT S+P P Sbjct: 623 PTRPSSPERP 632
>Q9Y5Y9:SCNAA_HUMAN Sodium channel protein type 10 subunit alpha - Homo sapiens (Human)| Length = 1956 Score = 32.0 bits (71), Expect = 2.2 Identities = 17/57 (29%), Positives = 25/57 (43%) Frame = +2 Query: 203 SPSSSPVAEDRRHRFDRSRPPPTMQSAPFAPPCCSFSVNDGSDDVTVDINEERYYFQ 373 SP P D RH D +PPPT + AP A +F ++ + +E + Q Sbjct: 552 SPLPQPSNPDSRHGEDEHQPPPTSELAPGAVDVSAFDAGQKKTFLSAEYLDEPFRAQ 608
>P59330:DCYD_SHIFL D-cysteine desulfhydrase - Shigella flexneri| Length = 328 Score = 32.0 bits (71), Expect = 2.2 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 285 GADCMVGGGLERSNRCRRSSATGDEDGLDCIALGRGSLNPTA 160 GAD ++ G +SN R+++A + GL C+AL + TA Sbjct: 66 GADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTA 107
>Q8ZNT7:DCYD_SALTY D-cysteine desulfhydrase - Salmonella typhimurium| Length = 328 Score = 32.0 bits (71), Expect = 2.2 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 285 GADCMVGGGLERSNRCRRSSATGDEDGLDCIALGRGSLNPTA 160 GAD ++ G +SN R+++A + GL C+AL + TA Sbjct: 66 GADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTA 107
>Q8Z5S9:DCYD_SALTI D-cysteine desulfhydrase - Salmonella typhi| Length = 328 Score = 32.0 bits (71), Expect = 2.2 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 285 GADCMVGGGLERSNRCRRSSATGDEDGLDCIALGRGSLNPTA 160 GAD ++ G +SN R+++A + GL C+AL + TA Sbjct: 66 GADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTA 107
>P76316:DCYD_ECOLI D-cysteine desulfhydrase - Escherichia coli| Length = 328 Score = 32.0 bits (71), Expect = 2.2 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 285 GADCMVGGGLERSNRCRRSSATGDEDGLDCIALGRGSLNPTA 160 GAD ++ G +SN R+++A + GL C+AL + TA Sbjct: 66 GADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTA 107
>P59329:DCYD_ECOL6 D-cysteine desulfhydrase - Escherichia coli O6| Length = 328 Score = 32.0 bits (71), Expect = 2.2 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 285 GADCMVGGGLERSNRCRRSSATGDEDGLDCIALGRGSLNPTA 160 GAD ++ G +SN R+++A + GL C+AL + TA Sbjct: 66 GADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTA 107
>Q8XBC7:DCYD_ECO57 D-cysteine desulfhydrase - Escherichia coli O157:H7| Length = 328 Score = 32.0 bits (71), Expect = 2.2 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -2 Query: 285 GADCMVGGGLERSNRCRRSSATGDEDGLDCIALGRGSLNPTA 160 GAD ++ G +SN R+++A + GL C+AL + TA Sbjct: 66 GADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTA 107
>Q8NDX1:PSD4_HUMAN PH and SEC7 domain-containing protein 4 - Homo sapiens (Human)| Length = 1056 Score = 31.6 bits (70), Expect = 2.9 Identities = 18/46 (39%), Positives = 20/46 (43%) Frame = +2 Query: 77 SSPFVVDPSTWRSPKQVREVHSPEEECQAVGFRLPRPKAMQSSPSS 214 S P + P WRSP E SPE E + G PRP S S Sbjct: 427 SLPCTLAPCPWRSPASSPEPSSPESESRGPG---PRPSPASSQEGS 469
>Q5RJW5:IRS2B_XENLA Insulin receptor substrate 2-B - Xenopus laevis (African clawed frog)| Length = 1077 Score = 31.6 bits (70), Expect = 2.9 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%) Frame = -2 Query: 354 SLMSTVTSSEPSFTEK-EQHGGANGADCMVGGG---LERSNRCRRSSATGDEDGLDCIAL 187 S STVT+S FTE ++H A+ + + E+ N+ R+ +TG ++GL+ IAL Sbjct: 970 SSASTVTTSSSCFTESSKRHSSASFDNVWLKSDENCCEQENKMSRNCSTGFQNGLNYIAL 1029 Query: 186 GR--GSLNPTA 160 G PT+ Sbjct: 1030 SMHDGVCEPTS 1040
>Q5ZIJ0:BUD13_CHICK BUD13 homolog - Gallus gallus (Chicken)| Length = 559 Score = 30.8 bits (68), Expect = 5.0 Identities = 19/64 (29%), Positives = 25/64 (39%) Frame = +2 Query: 95 DPSTWRSPKQVREVHSPEEECQAVGFRLPRPKAMQSSPSSSPVAEDRRHRFDRSRPPPTM 274 DPS R + SP+E+ L R K S P SSP R +P T Sbjct: 231 DPSPPRKKRHDSPDLSPQEQQTTPDLSLQRKKRYDSDPDSSPSLRKRARSPGHKKPSRTK 290 Query: 275 QSAP 286 ++P Sbjct: 291 DASP 294
>Q8ZF73:DCYD_YERPE D-cysteine desulfhydrase - Yersinia pestis| Length = 330 Score = 30.4 bits (67), Expect = 6.5 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -2 Query: 285 GADCMVGGGLERSNRCRRSSATGDEDGLDCIAL 187 GAD +V G +SN R+++A + GL C+AL Sbjct: 67 GADTLVTAGAIQSNHVRQTAAVAAKLGLHCVAL 99
>Q5PPH4:ZN414_RAT Zinc finger protein 414 - Rattus norvegicus (Rat)| Length = 299 Score = 30.0 bits (66), Expect = 8.5 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +2 Query: 179 PRPKAMQSSPSSSPVAEDRRHRFDRSRPPPTMQSAPFAPPCCSFS 313 P P + Q+S ++ V + R R RPPP Q P + P CS S Sbjct: 66 PVPDSCQTSSTTRGVGTNEDLRLPRRRPPPGKQ-IPCSSPGCSLS 109
>Q8VIG0:ZCH14_MOUSE Zinc finger CCHC domain-containing protein 14 - Mus musculus| (Mouse) Length = 956 Score = 30.0 bits (66), Expect = 8.5 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Frame = +2 Query: 191 AMQSSPSSSPV-AEDRRHRFDRSRPPPTMQSAPFAPPC-----CSFSVNDGSDDVTVDIN 352 A SSP + P ++ H +PP Q AP P C C S + GS+ +TV Sbjct: 755 AGSSSPGNIPASSQSHHHHHHHQQPPAPPQPAPPPPGCIVCTSCGCSGSCGSNGLTVSYA 814 Query: 353 EERYYFQN 376 YFQ+ Sbjct: 815 N---YFQH 819
>Q7MXE4:IF2_PORGI Translation initiation factor IF-2 - Porphyromonas gingivalis| (Bacteroides gingivalis) Length = 979 Score = 30.0 bits (66), Expect = 8.5 Identities = 21/73 (28%), Positives = 32/73 (43%) Frame = +2 Query: 80 SPFVVDPSTWRSPKQVREVHSPEEECQAVGFRLPRPKAMQSSPSSSPVAEDRRHRFDRSR 259 SP +P T R K RE +EE + V + +PK P E+ + + + Sbjct: 125 SPKDKEPDTVREDKPARETAPVKEETKVVPVKEDKPK------EEKPKQEEPKR--EEPK 176 Query: 260 PPPTMQSAPFAPP 298 P +Q+AP A P Sbjct: 177 PEEPVQAAPVAKP 189
>P17473:ICP4_EHV1K Trans-acting transcriptional protein ICP4 - Equine herpesvirus 1| (strain Kentucky A) (EHV-1) (Equine abortion virus) Length = 1487 Score = 30.0 bits (66), Expect = 8.5 Identities = 20/61 (32%), Positives = 30/61 (49%) Frame = -1 Query: 262 RSGAVKSMPAVLGYRRRGWTRLHRLGAWEPEPNGLTLLFGAMDLSDLLGGTPSARVHDER 83 R GA A G RR +H++ +PE + +L+ + DLLGG P++R R Sbjct: 1059 RDGARLGELAASGPLRRRAAWMHQIP--DPEDVKVVVLYSPLQDEDLLGGLPASRPGGSR 1116 Query: 82 R 80 R Sbjct: 1117 R 1117 Database: uniprot_sprot.fasta.out Posted date: Jul 19, 2007 5:58 PM Number of letters in database: 100,686,439 Number of sequences in database: 274,295 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 274295 Number of Hits to DB: 122,037,200 Number of extensions: 2805666 Number of successful extensions: 8629 Number of sequences better than 10.0: 18 Number of HSP's gapped: 8613 Number of HSP's successfully gapped: 18 Length of query: 227 Length of database: 100,686,439 Length adjustment: 109 Effective length of query: 118 Effective length of database: 70,788,284 Effective search space: 8353017512 Effective search space used: 8353017512 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
