ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf157a09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001054679.1| Oryza sativa (japonica cultivar-group) Os02g0753200 (Os02g0753200) mRNA, complete cds Length = 937 Score = 285 bits (144), Expect = 2e-73 Identities = 258/296 (87%) Strand = Plus / Plus Query: 510 aatggtggcaaccctccaggttctgttgatggaaagaggaaaataggcgctgcaaatcct 569 ||||||| ||||||||||| |||| ||| |||||||| | |||||| || ||||||||| Sbjct: 452 aatggtgccaaccctccagtttctactgaaggaaagagaataataggtgcggcaaatcct 511 Query: 570 ggtccagaagatgctgccgagcttctaagaatgtgcctccaatgtggtataccaaagacc 629 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct: 512 ggtccagaagatgctgctgatcttctaagaatgtgcctccaatgtggtataccaaagacc 571 Query: 630 tattcacacgcccaaggaatggtatgccctgtttgcaacgatagaccagtgcaggcaaaa 689 ||||||||||| | ||| ||||| || |||||||||||||||||||||| |||||||| | Sbjct: 572 tattcacacgcacgaggtatggtgtgtcctgtttgcaacgatagaccagagcaggcaaga 631 Query: 690 gaacccgagaagaagaagggttctgctgtcaaggacaaggagaaagtgaagaggatgaga 749 || || || |||||||| || || | ||||| ||||||||||| | || |||||||| Sbjct: 632 gagccagaaaagaagaaaggatcgaccgtcaaagacaaggagaagatcaaaaggatgagg 691 Query: 750 gggcaatcgtcacatgcatcgtggaagagcgagactgagatggctctgcggcaaca 805 |||||||| ||||| || ||||||||||| || ||||||||||| ||||||||||| Sbjct: 692 gggcaatcatcacacgcttcgtggaagagtgaaactgagatggccctgcggcaaca 747 Score = 77.8 bits (39), Expect = 7e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 209 gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 268 ||||||||| || || |||| |||||| ||||| || ||||| |||| ||||| ||| Sbjct: 232 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 291 Query: 269 tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 323 |||||| ||| |||||||||||| || |||||||||||| |||||||| |||||| Sbjct: 292 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 346 Score = 67.9 bits (34), Expect = 7e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 77 cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 136 |||||| ||||||||||||||||| || || || || |||||||| ||||| || ||| Sbjct: 82 cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 141 Query: 137 gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 196 |||||| | |||| ||| || || ||||||||||||||| ||||||||||| ||| || Sbjct: 142 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 201 Query: 197 tg 198 || Sbjct: 202 tg 203 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 39 ggctactcctccgccgaggacgaggaccccgccgccgccg 78 |||||||||||||||||||| || ||||| |||||||||| Sbjct: 29 ggctactcctccgccgaggaagacgacccagccgccgccg 68 Score = 42.1 bits (21), Expect = 3.8 Identities = 60/73 (82%) Strand = Plus / Plus Query: 345 aagccgccacctcccggtgcggttgtggcggcgaaaccacagatggttgccatccgtgga 404 |||| ||| ||||| ||||| ||||||| || ||||| || ||||||| || |||| | Sbjct: 374 aagcagccgcctcctggtgccgttgtggtcgcaaaacctcaattggttgcaattcgtgaa 433 Query: 405 cgagttagcagtg 417 ||||||||||||| Sbjct: 434 cgagttagcagtg 446
>dbj|AK067176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097D23, full insert sequence Length = 939 Score = 278 bits (140), Expect = 4e-71 Identities = 257/296 (86%) Strand = Plus / Plus Query: 510 aatggtggcaaccctccaggttctgttgatggaaagaggaaaataggcgctgcaaatcct 569 ||||||| ||||||||||| |||| ||| |||||||| | |||||| || ||||||||| Sbjct: 454 aatggtgccaaccctccagtttctactgaaggaaagagaataataggtgcggcaaatcct 513 Query: 570 ggtccagaagatgctgccgagcttctaagaatgtgcctccaatgtggtataccaaagacc 629 ||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| Sbjct: 514 ggtccagaagatgctgctgatcttctaagaatgtgcctccaatgtagtataccaaagacc 573 Query: 630 tattcacacgcccaaggaatggtatgccctgtttgcaacgatagaccagtgcaggcaaaa 689 ||||||||||| | ||| ||||| || |||||||||||||||||||||| |||||||| | Sbjct: 574 tattcacacgcacgaggtatggtgtgtcctgtttgcaacgatagaccagagcaggcaaga 633 Query: 690 gaacccgagaagaagaagggttctgctgtcaaggacaaggagaaagtgaagaggatgaga 749 || || || |||||||| || || | ||||| ||||||||||| | || |||||||| Sbjct: 634 gagccagaaaagaagaaaggatcgaccgtcaaagacaaggagaagatcaaaaggatgagg 693 Query: 750 gggcaatcgtcacatgcatcgtggaagagcgagactgagatggctctgcggcaaca 805 |||||||| ||||| || ||||||||||| || ||||||||||| ||||||||||| Sbjct: 694 gggcaatcatcacacgcttcgtggaagagtgaaactgagatggccctgcggcaaca 749 Score = 77.8 bits (39), Expect = 7e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 209 gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 268 ||||||||| || || |||| |||||| ||||| || ||||| |||| ||||| ||| Sbjct: 234 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 293 Query: 269 tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 323 |||||| ||| |||||||||||| || |||||||||||| |||||||| |||||| Sbjct: 294 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 348 Score = 67.9 bits (34), Expect = 7e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 77 cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 136 |||||| ||||||||||||||||| || || || || |||||||| ||||| || ||| Sbjct: 84 cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 143 Query: 137 gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 196 |||||| | |||| ||| || || ||||||||||||||| ||||||||||| ||| || Sbjct: 144 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 203 Query: 197 tg 198 || Sbjct: 204 tg 205 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 39 ggctactcctccgccgaggacgaggaccccgccgccgccg 78 |||||||||||||||||||| || ||||| |||||||||| Sbjct: 31 ggctactcctccgccgaggaagacgacccagccgccgccg 70 Score = 42.1 bits (21), Expect = 3.8 Identities = 60/73 (82%) Strand = Plus / Plus Query: 345 aagccgccacctcccggtgcggttgtggcggcgaaaccacagatggttgccatccgtgga 404 |||| ||| ||||| ||||| ||||||| || ||||| || ||||||| || |||| | Sbjct: 376 aagcagccgcctcctggtgccgttgtggtcgcaaaacctcaattggttgcaattcgtgaa 435 Query: 405 cgagttagcagtg 417 ||||||||||||| Sbjct: 436 cgagttagcagtg 448
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 200 bits (101), Expect = 7e-48 Identities = 182/209 (87%) Strand = Plus / Plus Query: 597 agaatgtgcctccaatgtggtataccaaagacctattcacacgcccaaggaatggtatgc 656 |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| || Sbjct: 31693323 agaatgtgcctccaatgtggtataccaaagacctattcacacgcacgaggtatggtgtgt 31693382 Query: 657 cctgtttgcaacgatagaccagtgcaggcaaaagaacccgagaagaagaagggttctgct 716 |||||||||||||||||||||| |||||||| ||| || || |||||||| || || | Sbjct: 31693383 cctgtttgcaacgatagaccagagcaggcaagagagccagaaaagaagaaaggatcgacc 31693442 Query: 717 gtcaaggacaaggagaaagtgaagaggatgagagggcaatcgtcacatgcatcgtggaag 776 ||||| ||||||||||| | || |||||||| |||||||| ||||| || ||||||||| Sbjct: 31693443 gtcaaagacaaggagaagatcaaaaggatgagggggcaatcatcacacgcttcgtggaag 31693502 Query: 777 agcgagactgagatggctctgcggcaaca 805 || || ||||||||||| ||||||||||| Sbjct: 31693503 agtgaaactgagatggccctgcggcaaca 31693531 Score = 89.7 bits (45), Expect = 2e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 510 aatggtggcaaccctccaggttctgttgatggaaagaggaaaataggcgctgcaaatcct 569 ||||||| ||||||||||| |||| ||| |||||||| | |||||| || ||||||||| Sbjct: 31693122 aatggtgccaaccctccagtttctactgaaggaaagagaataataggtgcggcaaatcct 31693181 Query: 570 ggtccagaagatgctgccgagcttctaag 598 ||||||||||||||||| || |||||||| Sbjct: 31693182 ggtccagaagatgctgctgatcttctaag 31693210 Score = 77.8 bits (39), Expect = 7e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 209 gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 268 ||||||||| || || |||| |||||| ||||| || ||||| |||| ||||| ||| Sbjct: 31691885 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 31691944 Query: 269 tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 323 |||||| ||| |||||||||||| || |||||||||||| |||||||| |||||| Sbjct: 31691945 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 31691999 Score = 67.9 bits (34), Expect = 7e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 77 cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 136 |||||| ||||||||||||||||| || || || || |||||||| ||||| || ||| Sbjct: 31691735 cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 31691794 Query: 137 gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 196 |||||| | |||| ||| || || ||||||||||||||| ||||||||||| ||| || Sbjct: 31691795 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 31691854 Query: 197 tg 198 || Sbjct: 31691855 tg 31691856 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 39 ggctactcctccgccgaggacgaggaccccgccgccgccg 78 |||||||||||||||||||| || ||||| |||||||||| Sbjct: 31691682 ggctactcctccgccgaggaagacgacccagccgccgccg 31691721 Score = 44.1 bits (22), Expect = 0.97 Identities = 22/22 (100%) Strand = Plus / Plus Query: 57 gacgaggaccccgccgccgccg 78 |||||||||||||||||||||| Sbjct: 33390985 gacgaggaccccgccgccgccg 33391006 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 ccgcccccgcgtaaaccctagcccc 191 ||||||||||| ||||||||||||| Sbjct: 18531451 ccgcccccgcgaaaaccctagcccc 18531475
>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1288_G09 Length = 109672 Score = 200 bits (101), Expect = 7e-48 Identities = 182/209 (87%) Strand = Plus / Plus Query: 597 agaatgtgcctccaatgtggtataccaaagacctattcacacgcccaaggaatggtatgc 656 |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| || Sbjct: 73110 agaatgtgcctccaatgtggtataccaaagacctattcacacgcacgaggtatggtgtgt 73169 Query: 657 cctgtttgcaacgatagaccagtgcaggcaaaagaacccgagaagaagaagggttctgct 716 |||||||||||||||||||||| |||||||| ||| || || |||||||| || || | Sbjct: 73170 cctgtttgcaacgatagaccagagcaggcaagagagccagaaaagaagaaaggatcgacc 73229 Query: 717 gtcaaggacaaggagaaagtgaagaggatgagagggcaatcgtcacatgcatcgtggaag 776 ||||| ||||||||||| | || |||||||| |||||||| ||||| || ||||||||| Sbjct: 73230 gtcaaagacaaggagaagatcaaaaggatgagggggcaatcatcacacgcttcgtggaag 73289 Query: 777 agcgagactgagatggctctgcggcaaca 805 || || ||||||||||| ||||||||||| Sbjct: 73290 agtgaaactgagatggccctgcggcaaca 73318 Score = 89.7 bits (45), Expect = 2e-14 Identities = 78/89 (87%) Strand = Plus / Plus Query: 510 aatggtggcaaccctccaggttctgttgatggaaagaggaaaataggcgctgcaaatcct 569 ||||||| ||||||||||| |||| ||| |||||||| | |||||| || ||||||||| Sbjct: 72909 aatggtgccaaccctccagtttctactgaaggaaagagaataataggtgcggcaaatcct 72968 Query: 570 ggtccagaagatgctgccgagcttctaag 598 ||||||||||||||||| || |||||||| Sbjct: 72969 ggtccagaagatgctgctgatcttctaag 72997 Score = 77.8 bits (39), Expect = 7e-11 Identities = 96/115 (83%) Strand = Plus / Plus Query: 209 gctgccctcggcgctagatgtcttcgccgagatctccggccccccggctttcctcaaccg 268 ||||||||| || || |||| |||||| ||||| || ||||| |||| ||||| ||| Sbjct: 71672 gctgccctcagcactggatgccttcgcggagatatcgggcccgccggagttcctgaacaa 71731 Query: 269 tagagtggcccagcccgaggaggtcggggaggcgctcggcgtgctcgatcgccgc 323 |||||| ||| |||||||||||| || |||||||||||| |||||||| |||||| Sbjct: 71732 tagagtcgccgagcccgaggaggccgtggaggcgctcggagtgctcgaccgccgc 71786 Score = 67.9 bits (34), Expect = 7e-08 Identities = 100/122 (81%) Strand = Plus / Plus Query: 77 cgagctcagcgactccggcgactcatcagccgaagaggccggatctgacggggacgagaa 136 |||||| ||||||||||||||||| || || || || |||||||| ||||| || ||| Sbjct: 71522 cgagctgagcgactccggcgactcctccgctgaggacgccggatcagacggcgaggaggc 71581 Query: 137 gtccgctccaccgaagccggctgcaaagccccgcccccgcgtaaaccctagccccggaga 196 |||||| | |||| ||| || || ||||||||||||||| ||||||||||| ||| || Sbjct: 71582 ttccgctgctccgaggccagccgcgaagccccgcccccgcccaaaccctagccgcgggga 71641 Query: 197 tg 198 || Sbjct: 71642 tg 71643 Score = 56.0 bits (28), Expect = 3e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 39 ggctactcctccgccgaggacgaggaccccgccgccgccg 78 |||||||||||||||||||| || ||||| |||||||||| Sbjct: 71469 ggctactcctccgccgaggaagacgacccagccgccgccg 71508
>gb|DQ245925.1| Zea mays clone 92514 mRNA sequence Length = 931 Score = 149 bits (75), Expect = 2e-32 Identities = 120/135 (88%) Strand = Plus / Plus Query: 679 tgcaggcaaaagaacccgagaagaagaagggttctgctgtcaaggacaaggagaaagtga 738 ||||| ||||||| ||||| |||||||||||||| ||||||| ||||||||||| || | Sbjct: 627 tgcagacaaaagagcccgaaaagaagaagggttccactgtcaaagacaaggagaaggtca 686 Query: 739 agaggatgagagggcaatcgtcacatgcatcgtggaagagcgagactgagatggctctgc 798 |||||||||| |||||||||||||||||||| |||||||| || || ||||||||||| | Sbjct: 687 agaggatgagggggcaatcgtcacatgcatcatggaagagtgaaaccgagatggctcttc 746 Query: 799 ggcaacagttcgact 813 ||||||| ||||||| Sbjct: 747 ggcaacaattcgact 761 Score = 99.6 bits (50), Expect = 2e-17 Identities = 95/110 (86%) Strand = Plus / Plus Query: 528 ggttctgttgatggaaagaggaaaataggcgctgcaaatcctggtccagaagatgctgcc 587 |||||| |||||||||| || |||||| |||||||||||||| |||||||| || || Sbjct: 476 ggttctattgatggaaaaagagtaataggtgctgcaaatcctgggccagaagacgcagct 535 Query: 588 gagcttctaagaatgtgcctccaatgtggtataccaaagacctattcaca 637 || |||||||| ||||| || ||||||||| ||||||||||||||||||| Sbjct: 536 gatcttctaaggatgtgtctacaatgtggtgtaccaaagacctattcaca 585 Score = 46.1 bits (23), Expect = 0.25 Identities = 41/47 (87%) Strand = Plus / Plus Query: 354 cctcccggtgcggttgtggcggcgaaaccacagatggttgccatccg 400 ||||| ||||| ||||||| ||| ||||||||||| ||||| ||||| Sbjct: 380 cctccaggtgctgttgtggtggcaaaaccacagatagttgctatccg 426
>gb|AY111222.1| Zea mays CL30969_1 mRNA sequence Length = 953 Score = 95.6 bits (48), Expect = 3e-16 Identities = 85/99 (85%) Strand = Plus / Minus Query: 715 ctgtcaaggacaaggagaaagtgaagaggatgagagggcaatcgtcacatgcatcgtgga 774 ||||||| ||||||||||| || |||||||||| ||||||||||||||||| |||| Sbjct: 313 ctgtcaaagacaaggagaaggtcaagaggatgannnnncaatcgtcacatgcatcatgga 254 Query: 775 agagcgagactgagatggctctgcggcaacagttcgact 813 |||| || || ||||||||||| |||||||| ||||||| Sbjct: 253 agagtgaaaccgagatggctcttcggcaacaattcgact 215 Score = 93.7 bits (47), Expect = 1e-15 Identities = 77/87 (88%) Strand = Plus / Minus Query: 551 aataggcgctgcaaatcctggtccagaagatgctgccgagcttctaagaatgtgcctcca 610 |||||| |||||||||||||| |||||||| || || || |||||||| ||||| || || Sbjct: 477 aataggtgctgcaaatcctgggccagaagacgcagctgatcttctaaggatgtgtctaca 418 Query: 611 atgtggtataccaaagacctattcaca 637 ||||||| ||||||||||||||||||| Sbjct: 417 atgtggtgtaccaaagacctattcaca 391 Score = 46.1 bits (23), Expect = 0.25 Identities = 41/47 (87%) Strand = Plus / Minus Query: 354 cctcccggtgcggttgtggcggcgaaaccacagatggttgccatccg 400 ||||| ||||| ||||||| ||| ||||||||||| ||||| ||||| Sbjct: 596 cctccaggtgctgttgtggtggcaaaaccacagatagttgctatccg 550
>gb|AY110363.1| Zea mays CL13131_1 mRNA sequence Length = 621 Score = 93.7 bits (47), Expect = 1e-15 Identities = 77/87 (88%) Strand = Plus / Minus Query: 551 aataggcgctgcaaatcctggtccagaagatgctgccgagcttctaagaatgtgcctcca 610 |||||| || ||||||||||||||||||||||| || || ||||| || ||||| ||||| Sbjct: 504 aataggtgccgcaaatcctggtccagaagatgcagctgatcttctgaggatgtgtctcca 445 Query: 611 atgtggtataccaaagacctattcaca 637 ||||||| ||||||||||||| ||||| Sbjct: 444 atgtggtgtaccaaagacctactcaca 418 Score = 85.7 bits (43), Expect = 3e-13 Identities = 85/99 (85%) Strand = Plus / Minus Query: 715 ctgtcaaggacaaggagaaagtgaagaggatgagagggcaatcgtcacatgcatcgtgga 774 ||||||| ||||||||||| | ||||||||||| || |||||||| ||||| || |||| Sbjct: 340 ctgtcaaagacaaggagaagatcaagaggatgaggggccaatcgtcgcatgcgtcctgga 281 Query: 775 agagcgagactgagatggctctgcggcaacagttcgact 813 ||||||| || ||||||||||| || ||||| ||||||| Sbjct: 280 agagcgaaaccgagatggctcttcgacaacatttcgact 242
>emb|AJ635177.1| Mangifera indica microsatellite DNA, locus mMiCIR015 Length = 490 Score = 50.1 bits (25), Expect = 0.016 Identities = 46/53 (86%) Strand = Plus / Plus Query: 609 caatgtggtataccaaagacctattcacacgcccaaggaatggtatgccctgt 661 |||||||| |||||||||||||| ||| | |||| ||||||||| || ||||| Sbjct: 161 caatgtggaataccaaagacctactcaaatgcccgaggaatggtgtgtcctgt 213
>gb|AC135315.19| Medicago truncatula clone mth2-13p6, complete sequence Length = 135310 Score = 48.1 bits (24), Expect = 0.062 Identities = 27/28 (96%) Strand = Plus / Plus Query: 529 gttctgttgatggaaagaggaaaatagg 556 |||||||||||| ||||||||||||||| Sbjct: 83184 gttctgttgatgcaaagaggaaaatagg 83211
>gb|AC149040.2| Medicago truncatula chromosome 7 BAC clone mth2-9f22, complete sequence Length = 120423 Score = 48.1 bits (24), Expect = 0.062 Identities = 27/28 (96%) Strand = Plus / Minus Query: 529 gttctgttgatggaaagaggaaaatagg 556 |||||||||||| ||||||||||||||| Sbjct: 13646 gttctgttgatgcaaagaggaaaatagg 13619
>gb|AC149131.3| Medicago truncatula chromosome 7 BAC clone mth2-19e15, complete sequence Length = 122492 Score = 48.1 bits (24), Expect = 0.062 Identities = 27/28 (96%) Strand = Plus / Plus Query: 529 gttctgttgatggaaagaggaaaatagg 556 |||||||||||| ||||||||||||||| Sbjct: 76388 gttctgttgatgcaaagaggaaaatagg 76415
>gb|AC119415.13| Medicago truncatula clone mth2-27n2, complete sequence Length = 139330 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Plus Query: 529 gttctgttgatggaaagaggaaaatag 555 |||||||||||| |||||||||||||| Sbjct: 126911 gttctgttgatgcaaagaggaaaatag 126937
>gb|AC157375.2| Medicago truncatula chromosome 2 BAC clone mth2-55b12, complete sequence Length = 125311 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Minus Query: 529 gttctgttgatggaaagaggaaaatag 555 |||||||||||| |||||||||||||| Sbjct: 69078 gttctgttgatgcaaagaggaaaatag 69052
>gb|AC126789.20| Medicago truncatula clone mth2-36n23, complete sequence Length = 126875 Score = 46.1 bits (23), Expect = 0.25 Identities = 26/27 (96%) Strand = Plus / Plus Query: 529 gttctgttgatggaaagaggaaaatag 555 |||||||||||| |||||||||||||| Sbjct: 81070 gttctgttgatgcaaagaggaaaatag 81096
>dbj|AK242931.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J090086E14, full insert sequence Length = 3881 Score = 44.1 bits (22), Expect = 0.97 Identities = 22/22 (100%) Strand = Plus / Plus Query: 57 gacgaggaccccgccgccgccg 78 |||||||||||||||||||||| Sbjct: 65 gacgaggaccccgccgccgccg 86
>dbj|AK237480.1| Sus scrofa mRNA, clone:SPL010051C09, expressed in spleen Length = 1271 Score = 44.1 bits (22), Expect = 0.97 Identities = 22/22 (100%) Strand = Plus / Minus Query: 560 tgcaaatcctggtccagaagat 581 |||||||||||||||||||||| Sbjct: 953 tgcaaatcctggtccagaagat 932
>gb|AY022885.1| Oryza sativa microsatellite MRG5210 containing (CGG)X8, closest to marker C253, genomic sequence Length = 224 Score = 44.1 bits (22), Expect = 0.97 Identities = 22/22 (100%) Strand = Plus / Minus Query: 57 gacgaggaccccgccgccgccg 78 |||||||||||||||||||||| Sbjct: 134 gacgaggaccccgccgccgccg 113
>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence Length = 253910 Score = 44.1 bits (22), Expect = 0.97 Identities = 25/26 (96%) Strand = Plus / Plus Query: 727 aggagaaagtgaagaggatgagaggg 752 ||||||||| |||||||||||||||| Sbjct: 187516 aggagaaagagaagaggatgagaggg 187541
>gb|AC024068.16| Mus musculus strain 129S6/SvEvTac clone rp22-86n23 map 1, complete sequence Length = 157066 Score = 44.1 bits (22), Expect = 0.97 Identities = 22/22 (100%) Strand = Plus / Plus Query: 723 gacaaggagaaagtgaagagga 744 |||||||||||||||||||||| Sbjct: 143938 gacaaggagaaagtgaagagga 143959
>gb|AC158577.5| Mus musculus chromosome 1, clone RP24-187D4, complete sequence Length = 155742 Score = 44.1 bits (22), Expect = 0.97 Identities = 22/22 (100%) Strand = Plus / Minus Query: 723 gacaaggagaaagtgaagagga 744 |||||||||||||||||||||| Sbjct: 103308 gacaaggagaaagtgaagagga 103287
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.97 Identities = 28/30 (93%) Strand = Plus / Plus Query: 287 ggaggtcggggaggcgctcggcgtgctcga 316 |||||| || |||||||||||||||||||| Sbjct: 4418213 ggaggtgggcgaggcgctcggcgtgctcga 4418242
>dbj|AP004095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1715_H01 Length = 138733 Score = 44.1 bits (22), Expect = 0.97 Identities = 22/22 (100%) Strand = Plus / Plus Query: 57 gacgaggaccccgccgccgccg 78 |||||||||||||||||||||| Sbjct: 131735 gacgaggaccccgccgccgccg 131756
>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1316_E06 Length = 110197 Score = 44.1 bits (22), Expect = 0.97 Identities = 22/22 (100%) Strand = Plus / Plus Query: 57 gacgaggaccccgccgccgccg 78 |||||||||||||||||||||| Sbjct: 21604 gacgaggaccccgccgccgccg 21625
>ref|NM_001014337.1| Danio rerio zgc:113176 (zgc:113176), mRNA gb|BC091830.1| Danio rerio zgc:113176, mRNA (cDNA clone MGC:113176 IMAGE:7148213), complete cds Length = 2019 Score = 44.1 bits (22), Expect = 0.97 Identities = 22/22 (100%) Strand = Plus / Minus Query: 731 gaaagtgaagaggatgagaggg 752 |||||||||||||||||||||| Sbjct: 1666 gaaagtgaagaggatgagaggg 1645
>gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, complete sequence Length = 185242 Score = 44.1 bits (22), Expect = 0.97 Identities = 25/26 (96%) Strand = Plus / Plus Query: 727 aggagaaagtgaagaggatgagaggg 752 ||||||||| |||||||||||||||| Sbjct: 49632 aggagaaagagaagaggatgagaggg 49657
>dbj|AK241836.1| Oryza sativa (japonica cultivar-group) cDNA, clone: J065213I02, full insert sequence Length = 855 Score = 42.1 bits (21), Expect = 3.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 50 cgccgaggacgaggaccccgccgccgccg 78 |||||| ||||||||| |||||||||||| Sbjct: 222 cgccgacgacgaggacgccgccgccgccg 194
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 aggcgctcggcgtgctcgatcgccg 322 |||||||||||| |||||||||||| Sbjct: 3712248 aggcgctcggcgagctcgatcgccg 3712224
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 gcgctcggcgtgctcgatcgc 320 ||||||||||||||||||||| Sbjct: 1121480 gcgctcggcgtgctcgatcgc 1121460
>gb|AY518220.1| Oryza sativa (indica cultivar-group) NBS-LRR-like protein A (NL-A), NBS-LRR-like protein B (NL-B), NBS-LRR-like protein C (NL-C), and NBS-LRR-like protein D (NL-D) genes, complete cds Length = 73617 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 167 ccgcccccgcgtaaaccctagcccc 191 ||||||||||| ||||||||||||| Sbjct: 72817 ccgcccccgcgaaaaccctagcccc 72793
>gb|AC100828.2| Homo sapiens chromosome 15, clone RP11-184D12, complete sequence Length = 175123 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 858 acactaggtagaatacaatctcttt 882 ||||||| ||||||||||||||||| Sbjct: 51328 acactagatagaatacaatctcttt 51352
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12 Length = 27566993 Score = 42.1 bits (21), Expect = 3.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 50 cgccgaggacgaggaccccgccgccgccg 78 |||||| ||||||||| |||||||||||| Sbjct: 22541582 cgccgacgacgaggacgccgccgccgccg 22541554
>gb|AC068867.9| Homo sapiens chromosome 15, clone RP11-702M1, complete sequence Length = 179455 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 858 acactaggtagaatacaatctcttt 882 ||||||| ||||||||||||||||| Sbjct: 114549 acactagatagaatacaatctcttt 114573
>gb|AC090815.3| Homo sapiens chromosome 15, clone RP11-1078O1, complete sequence Length = 180352 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 858 acactaggtagaatacaatctcttt 882 ||||||| ||||||||||||||||| Sbjct: 51128 acactagatagaatacaatctcttt 51104
>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13 Length = 349563 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 aggcgctcggcgtgctcgatcgccg 322 |||||||||||| |||||||||||| Sbjct: 246970 aggcgctcggcgagctcgatcgccg 246946
>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 12/14 Length = 308050 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 aggcgctcggcgtgctcgatcgccg 322 |||||||||||| |||||||||||| Sbjct: 228882 aggcgctcggcgagctcgatcgccg 228858
>gb|AC117394.10| Homo sapiens 3 BAC RP11-529G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198170 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 cccgccgccgccgagctcagc 86 ||||||||||||||||||||| Sbjct: 75024 cccgccgccgccgagctcagc 75004
>gb|AC093642.5| Homo sapiens BAC clone RP11-341N2 from 2, complete sequence Length = 158203 Score = 42.1 bits (21), Expect = 3.8 Identities = 27/29 (93%) Strand = Plus / Plus Query: 273 gtggcccagcccgaggaggtcggggaggc 301 |||||||||||||||| || ||||||||| Sbjct: 51970 gtggcccagcccgaggtggccggggaggc 51998
>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1789_D08 Length = 128673 Score = 42.1 bits (21), Expect = 3.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 167 ccgcccccgcgtaaaccctagcccc 191 ||||||||||| ||||||||||||| Sbjct: 72590 ccgcccccgcgaaaaccctagcccc 72614
>dbj|AB008267.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MMG4 Length = 79046 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 688 aagaacccgagaagaagaagg 708 ||||||||||||||||||||| Sbjct: 60378 aagaacccgagaagaagaagg 60398
>gb|AC008545.3|AC008545 Homo sapiens chromosome 5 clone CTC-500L4, complete sequence Length = 90493 Score = 42.1 bits (21), Expect = 3.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 955 tacttgggtctgttttataag 975 ||||||||||||||||||||| Sbjct: 44653 tacttgggtctgttttataag 44673
>emb|AL954871.5|CNS08CDA Oryza sativa chromosome 12, . BAC OSJNBb0085B24 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131441 Score = 42.1 bits (21), Expect = 3.8 Identities = 27/29 (93%) Strand = Plus / Minus Query: 50 cgccgaggacgaggaccccgccgccgccg 78 |||||| ||||||||| |||||||||||| Sbjct: 44161 cgccgacgacgaggacgccgccgccgccg 44133 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 158,114,722 Number of extensions: 9786254 Number of successful extensions: 176044 Number of sequences better than 10.0: 41 Number of HSP's gapped: 176043 Number of HSP's successfully gapped: 64 Length of query: 1015 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 992 Effective length of database: 18,503,978,556 Effective search space: 18355946727552 Effective search space used: 18355946727552 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
