ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf151g16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001061670.1| Oryza sativa (japonica cultivar-group) Os05g0301600 (Os05g0301600) mRNA, complete cds Length = 1098 Score = 365 bits (184), Expect = 2e-97 Identities = 352/408 (86%) Strand = Plus / Plus Query: 240 aatcatgagctcccatcgcgtgaagtggaatgaggacaatctgtatgaaattgaatcaaa 299 |||||||||||| | ||| |||||||||||||| ||||| |||||||| ||||||||||| Sbjct: 235 aatcatgagctctcgtcgtgtgaagtggaatgaagacaacctgtatgagattgaatcaaa 294 Query: 300 caagccagtgaggcagaagataaccgagcccaagacaccgtatcaccctatgatggatga 359 || || || |||||||||||||| ||||| |||||||| |||||||||||| | ||||| Sbjct: 295 taaacctgttaggcagaagataactgagcctaagacaccatatcaccctatggtagatga 354 Query: 360 agatgggtcactatcaccaacacgccctttcgacaagtgtctagatgagactgttagtgc 419 ||||||||| | |||||||| || ||||| ||||||||||| ||||||||||||| ||| Sbjct: 355 tgatgggtcattgtcaccaacgcgtccttttgacaagtgtctggatgagactgttaatgc 414 Query: 420 tgaagctatattcactgctttaaatggtgtggcctcttcaagtaaaaatgattcaaagga 479 ||||||||| || |||||||||||||||||||| |||||||| |||| |||| ||||||| Sbjct: 415 tgaagctattttaactgctttaaatggtgtggcttcttcaagcaaaactgatccaaagga 474 Query: 480 tgatgagtgggcatcctcagatgatgatgcagatgccatggaacaggatggtgactcaga 539 ||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||| Sbjct: 475 tgatggttgggcatcctcagatgatgatgcagatgccatggaacaagatgatgatccaga 534 Query: 540 agctgacaaatcatcagtgagtttcaaggagcatcgccgcaatcactacgatgaataccg 599 |||||| || ||| | ||||||||||||| ||||| || |||||| ||||||| || Sbjct: 535 agctgaaaagtcaagactgagtttcaaggaacatcgtcgtgctcactatgatgaattcct 594 Query: 600 caaggttaaggaactgatgcgcactggatccctggttgaagacgaggc 647 |||||| ||||| ||||||||| | ||||| ||| |||| || ||||| Sbjct: 595 caaggtgaaggagctgatgcgctccggatcgctgattgacgatgaggc 642
>dbj|AK073928.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073L20, full insert sequence Length = 1098 Score = 365 bits (184), Expect = 2e-97 Identities = 352/408 (86%) Strand = Plus / Plus Query: 240 aatcatgagctcccatcgcgtgaagtggaatgaggacaatctgtatgaaattgaatcaaa 299 |||||||||||| | ||| |||||||||||||| ||||| |||||||| ||||||||||| Sbjct: 235 aatcatgagctctcgtcgtgtgaagtggaatgaagacaacctgtatgagattgaatcaaa 294 Query: 300 caagccagtgaggcagaagataaccgagcccaagacaccgtatcaccctatgatggatga 359 || || || |||||||||||||| ||||| |||||||| |||||||||||| | ||||| Sbjct: 295 taaacctgttaggcagaagataactgagcctaagacaccatatcaccctatggtagatga 354 Query: 360 agatgggtcactatcaccaacacgccctttcgacaagtgtctagatgagactgttagtgc 419 ||||||||| | |||||||| || ||||| ||||||||||| ||||||||||||| ||| Sbjct: 355 tgatgggtcattgtcaccaacgcgtccttttgacaagtgtctggatgagactgttaatgc 414 Query: 420 tgaagctatattcactgctttaaatggtgtggcctcttcaagtaaaaatgattcaaagga 479 ||||||||| || |||||||||||||||||||| |||||||| |||| |||| ||||||| Sbjct: 415 tgaagctattttaactgctttaaatggtgtggcttcttcaagcaaaactgatccaaagga 474 Query: 480 tgatgagtgggcatcctcagatgatgatgcagatgccatggaacaggatggtgactcaga 539 ||||| |||||||||||||||||||||||||||||||||||||| |||| ||| |||| Sbjct: 475 tgatggttgggcatcctcagatgatgatgcagatgccatggaacaagatgatgatccaga 534 Query: 540 agctgacaaatcatcagtgagtttcaaggagcatcgccgcaatcactacgatgaataccg 599 |||||| || ||| | ||||||||||||| ||||| || |||||| ||||||| || Sbjct: 535 agctgaaaagtcaagactgagtttcaaggaacatcgtcgtgctcactatgatgaattcct 594 Query: 600 caaggttaaggaactgatgcgcactggatccctggttgaagacgaggc 647 |||||| ||||| ||||||||| | ||||| ||| |||| || ||||| Sbjct: 595 caaggtgaaggagctgatgcgctccggatcgctgattgacgatgaggc 642
>gb|AY596561.1| Saccharum officinarum clone SCRFLR1012F07, complete sequence Length = 1020 Score = 323 bits (163), Expect = 7e-85 Identities = 324/377 (85%), Gaps = 3/377 (0%) Strand = Plus / Minus Query: 259 gtgaagtggaatgaggacaatctgtatgaaattgaatcaaacaagccagtgaggcagaag 318 |||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||| Sbjct: 789 gtgaagtggaatgaggacaatctgtacgaaattgagtcaaacaaaccggtgaggcagaag 730 Query: 319 ataaccgagcccaagacaccgtatcaccctatgatggatgaagatgggtcactatcacca 378 ||||| ||||| |||||||| |||||||||||||| ||||| ||||||||||| || ||| Sbjct: 729 ataacagagccaaagacaccatatcaccctatgatagatgatgatgggtcactgtcgcca 670 Query: 379 acacgccctttcgacaagtgtctagatgagactgttagtgctgaagctatattcactgct 438 ||||| ||||||||||| ||||| ||||||||||| ||||||||||| || | || Sbjct: 669 acacgtcctttcgacaaatgtctcgatgagactgtccaagctgaagctatcttagcggcc 610 Query: 439 ttaaatggtgtggcctct---tcaagtaaaaatgattcaaaggatgatgagtgggcatcc 495 |||||||||||||| ||| ||||| || | ||||||||||||||| |||| || Sbjct: 609 ttaaatggtgtggcttcttcatcaagcaatagcaattcaaaggatgatggttggggattg 550 Query: 496 tcagatgatgatgcagatgccatggaacaggatggtgactcagaagctgacaaatcatca 555 |||||||||||| |||||||||| ||||| |||| |||| |||||||||||| | || | Sbjct: 549 tcagatgatgatacagatgccatagaacaagatgatgacccagaagctgacacaacaaga 490 Query: 556 gtgagtttcaaggagcatcgccgcaatcactacgatgaataccgcaaggttaaggaactg 615 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct: 489 ttgagtttcaaggagcatcgccgtgcccactacgatgagtaccgcaaggttaaggaactg 430 Query: 616 atgcgcactggatccct 632 ||| ||||||||||||| Sbjct: 429 atgagcactggatccct 413
>gb|DQ245913.1| Zea mays clone 22333 mRNA sequence Length = 770 Score = 281 bits (142), Expect = 2e-72 Identities = 328/390 (84%) Strand = Plus / Plus Query: 243 catgagctcccatcgcgtgaagtggaatgaggacaatctgtatgaaattgaatcaaacaa 302 ||||||||| || || ||||||||||||||||||||| ||||||||||||| |||||||| Sbjct: 49 catgagctctcaccgtgtgaagtggaatgaggacaatttgtatgaaattgagtcaaacaa 108 Query: 303 gccagtgaggcagaagataaccgagcccaagacaccgtatcaccctatgatggatgaaga 362 || ||||||||||||||||| ||||| |||||||| |||||||| ||||| ||||| || Sbjct: 109 accggtgaggcagaagataacagagccaaagacaccatatcacccaatgatagatgatga 168 Query: 363 tgggtcactatcaccaacacgccctttcgacaagtgtctagatgagactgttagtgctga 422 ||| ||| | || |||||||| ||||||||||| ||||| ||||||||||| ||||| Sbjct: 169 tggatcattgtcgccaacacgtcctttcgacaaatgtcttgatgagactgtccaggctga 228 Query: 423 agctatattcactgctttaaatggtgtggcctcttcaagtaaaaatgattcaaaggatga 482 |||||| || || || |||||||||||||| |||||||| | | |||||||||||| Sbjct: 229 agctatcttaacagccttaaatggtgtggcttcttcaagcattagcatttcaaaggatga 288 Query: 483 tgagtgggcatcctcagatgatgatgcagatgccatggaacaggatggtgactcagaagc 542 || |||| ||| |||||||||||| |||||||||| || || |||| |||| | ||||| Sbjct: 289 tggttggggatcgtcagatgatgatacagatgccatagatcaagatgctgaccctgaagc 348 Query: 543 tgacaaatcatcagtgagtttcaaggagcatcgccgcaatcactacgatgaataccgcaa 602 ||||| || |||||||||||||||||||||| ||||||||||| |||||||| Sbjct: 349 tgacacgacaaggttgagtttcaaggagcatcgccgtgcccactacgatgagtaccgcaa 408 Query: 603 ggttaaggaactgatgcgcactggatccct 632 ||||||||| |||||| | ||||||||||| Sbjct: 409 ggttaaggagctgatgaggactggatccct 438
>gb|AC093953.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1057_C01, complete sequence Length = 142752 Score = 202 bits (102), Expect = 2e-48 Identities = 150/166 (90%) Strand = Plus / Plus Query: 364 gggtcactatcaccaacacgccctttcgacaagtgtctagatgagactgttagtgctgaa 423 |||||| | |||||||| || ||||| ||||||||||| ||||||||||||| ||||||| Sbjct: 89542 gggtcattgtcaccaacgcgtccttttgacaagtgtctggatgagactgttaatgctgaa 89601 Query: 424 gctatattcactgctttaaatggtgtggcctcttcaagtaaaaatgattcaaaggatgat 483 ||||| || |||||||||||||||||||| |||||||| |||| |||| ||||||||||| Sbjct: 89602 gctattttaactgctttaaatggtgtggcttcttcaagcaaaactgatccaaaggatgat 89661 Query: 484 gagtgggcatcctcagatgatgatgcagatgccatggaacaggatg 529 | |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 89662 ggttgggcatcctcagatgatgatgcagatgccatggaacaagatg 89707 Score = 109 bits (55), Expect = 2e-20 Identities = 94/107 (87%) Strand = Plus / Plus Query: 259 gtgaagtggaatgaggacaatctgtatgaaattgaatcaaacaagccagtgaggcagaag 318 |||||||||||||| ||||| |||||||| ||||||||||| || || || ||||||||| Sbjct: 89340 gtgaagtggaatgaagacaacctgtatgagattgaatcaaataaacctgttaggcagaag 89399 Query: 319 ataaccgagcccaagacaccgtatcaccctatgatggatgaagatgg 365 ||||| ||||| |||||||| |||||||||||| | ||||| ||||| Sbjct: 89400 ataactgagcctaagacaccatatcaccctatggtagatgatgatgg 89446 Score = 56.0 bits (28), Expect = 3e-04 Identities = 91/112 (81%) Strand = Plus / Plus Query: 536 cagaagctgacaaatcatcagtgagtttcaaggagcatcgccgcaatcactacgatgaat 595 |||||||||| || ||| | ||||||||||||| ||||| || |||||| ||||||| Sbjct: 90513 cagaagctgaaaagtcaagactgagtttcaaggaacatcgtcgtgctcactatgatgaat 90572 Query: 596 accgcaaggttaaggaactgatgcgcactggatccctggttgaagacgaggc 647 || |||||| ||||| ||||||||| | ||||| ||| |||| || ||||| Sbjct: 90573 tcctcaaggtgaaggagctgatgcgctccggatcgctgattgacgatgaggc 90624
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 202 bits (102), Expect = 2e-48 Identities = 150/166 (90%) Strand = Plus / Plus Query: 364 gggtcactatcaccaacacgccctttcgacaagtgtctagatgagactgttagtgctgaa 423 |||||| | |||||||| || ||||| ||||||||||| ||||||||||||| ||||||| Sbjct: 13406079 gggtcattgtcaccaacgcgtccttttgacaagtgtctggatgagactgttaatgctgaa 13406138 Query: 424 gctatattcactgctttaaatggtgtggcctcttcaagtaaaaatgattcaaaggatgat 483 ||||| || |||||||||||||||||||| |||||||| |||| |||| ||||||||||| Sbjct: 13406139 gctattttaactgctttaaatggtgtggcttcttcaagcaaaactgatccaaaggatgat 13406198 Query: 484 gagtgggcatcctcagatgatgatgcagatgccatggaacaggatg 529 | |||||||||||||||||||||||||||||||||||||| |||| Sbjct: 13406199 ggttgggcatcctcagatgatgatgcagatgccatggaacaagatg 13406244 Score = 109 bits (55), Expect = 2e-20 Identities = 94/107 (87%) Strand = Plus / Plus Query: 259 gtgaagtggaatgaggacaatctgtatgaaattgaatcaaacaagccagtgaggcagaag 318 |||||||||||||| ||||| |||||||| ||||||||||| || || || ||||||||| Sbjct: 13405877 gtgaagtggaatgaagacaacctgtatgagattgaatcaaataaacctgttaggcagaag 13405936 Query: 319 ataaccgagcccaagacaccgtatcaccctatgatggatgaagatgg 365 ||||| ||||| |||||||| |||||||||||| | ||||| ||||| Sbjct: 13405937 ataactgagcctaagacaccatatcaccctatggtagatgatgatgg 13405983 Score = 56.0 bits (28), Expect = 3e-04 Identities = 91/112 (81%) Strand = Plus / Plus Query: 536 cagaagctgacaaatcatcagtgagtttcaaggagcatcgccgcaatcactacgatgaat 595 |||||||||| || ||| | ||||||||||||| ||||| || |||||| ||||||| Sbjct: 13407050 cagaagctgaaaagtcaagactgagtttcaaggaacatcgtcgtgctcactatgatgaat 13407109 Query: 596 accgcaaggttaaggaactgatgcgcactggatccctggttgaagacgaggc 647 || |||||| ||||| ||||||||| | ||||| ||| |||| || ||||| Sbjct: 13407110 tcctcaaggtgaaggagctgatgcgctccggatcgctgattgacgatgaggc 13407161
>gb|AC186754.1| Musa balbisiana clone MBP_81C12, complete sequence Length = 142973 Score = 83.8 bits (42), Expect = 1e-12 Identities = 72/82 (87%) Strand = Plus / Minus Query: 284 atgaaattgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatc 343 |||| |||||| |||| || |||||||||||||| ||||| ||||| |||||||| |||| Sbjct: 34321 atgagattgaagcaaataaaccagtgaggcagaaaataacagagcctaagacaccttatc 34262 Query: 344 accctatgatggatgaagatgg 365 |||||||||| ||||| ||||| Sbjct: 34261 accctatgatcgatgatgatgg 34240
>gb|AC186955.1| Musa acuminata clone MA4_82I11, complete sequence Length = 102232 Score = 75.8 bits (38), Expect = 3e-10 Identities = 62/70 (88%) Strand = Plus / Minus Query: 284 atgaaattgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatc 343 |||| |||||| |||| || |||||||||||||| ||||| ||||| |||||||| |||| Sbjct: 8226 atgagattgaagcaaataaaccagtgaggcagaaaataacagagcctaagacaccttatc 8167 Query: 344 accctatgat 353 |||||||||| Sbjct: 8166 accctatgat 8157
>ref|NM_124599.3| Arabidopsis thaliana unknown protein (AT5G52200) mRNA, complete cds Length = 786 Score = 58.0 bits (29), Expect = 7e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 289 attgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatcaccct 348 |||||||| ||||| || || ||||||||||| || || || |||||||| || ||||| Sbjct: 86 attgaatcgaacaaacctgttaggcagaagattactgaaccaaagacaccataccacccg 145 Query: 349 atgatggatgaagatgg 365 ||||||||||| ||||| Sbjct: 146 atgatggatgatgatgg 162
>gb|AY116938.1| Arabidopsis thaliana AT5g52200/F17P19_10 mRNA, complete cds Length = 576 Score = 58.0 bits (29), Expect = 7e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 289 attgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatcaccct 348 |||||||| ||||| || || ||||||||||| || || || |||||||| || ||||| Sbjct: 55 attgaatcgaacaaacctgttaggcagaagattactgaaccaaagacaccataccacccg 114 Query: 349 atgatggatgaagatgg 365 ||||||||||| ||||| Sbjct: 115 atgatggatgatgatgg 131
>gb|AY050347.1| Arabidopsis thaliana AT5g52200/F17P19_10 mRNA, complete cds Length = 780 Score = 58.0 bits (29), Expect = 7e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 289 attgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatcaccct 348 |||||||| ||||| || || ||||||||||| || || || |||||||| || ||||| Sbjct: 85 attgaatcgaacaaacctgttaggcagaagattactgaaccaaagacaccataccacccg 144 Query: 349 atgatggatgaagatgg 365 ||||||||||| ||||| Sbjct: 145 atgatggatgatgatgg 161
>dbj|AB025603.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F17P19 Length = 48420 Score = 58.0 bits (29), Expect = 7e-05 Identities = 65/77 (84%) Strand = Plus / Minus Query: 289 attgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatcaccct 348 |||||||| ||||| || || ||||||||||| || || || |||||||| || ||||| Sbjct: 23917 attgaatcgaacaaacctgttaggcagaagattactgaaccaaagacaccataccacccg 23858 Query: 349 atgatggatgaagatgg 365 ||||||||||| ||||| Sbjct: 23857 atgatggatgatgatgg 23841
>emb|BX833610.1|CNS0A0C3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL65ZG03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 733 Score = 58.0 bits (29), Expect = 7e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 289 attgaatcaaacaagccagtgaggcagaagataaccgagcccaagacaccgtatcaccct 348 |||||||| ||||| || || ||||||||||| || || || |||||||| || ||||| Sbjct: 86 attgaatcgaacaaacctgttaggcagaagattactgaaccaaagacaccataccacccg 145 Query: 349 atgatggatgaagatgg 365 ||||||||||| ||||| Sbjct: 146 atgatggatgatgatgg 162
>emb|CT828518.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA024N07, full insert sequence Length = 635 Score = 56.0 bits (28), Expect = 3e-04 Identities = 91/112 (81%) Strand = Plus / Plus Query: 536 cagaagctgacaaatcatcagtgagtttcaaggagcatcgccgcaatcactacgatgaat 595 |||||||||| || ||| | ||||||||||||| ||||| || |||||| ||||||| Sbjct: 182 cagaagctgaaaagtcaagactgagtttcaaggaacatcgtcgtgctcactatgatgaat 241 Query: 596 accgcaaggttaaggaactgatgcgcactggatccctggttgaagacgaggc 647 || |||||| ||||| ||||||||| | ||||| ||| |||| || ||||| Sbjct: 242 tcctcaaggtgaaggagctgatgcgctccggatcgctgattgacgatgaggc 293
>gb|AC168309.2| Mus musculus chromosome 1, clone wi1-2866I16, complete sequence Length = 40737 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 504 tgatgcagatgccatggaacag 525 |||||||||||||||||||||| Sbjct: 14294 tgatgcagatgccatggaacag 14315
>gb|AC102374.7| Mus musculus chromosome 1, clone RP23-278G2, complete sequence Length = 170448 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Minus Query: 504 tgatgcagatgccatggaacag 525 |||||||||||||||||||||| Sbjct: 14296 tgatgcagatgccatggaacag 14275
>gb|AC111008.6| Mus musculus BAC clone RP23-415J21 from chromosome 7, complete sequence Length = 193593 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 820 gcctgctctgtgtgtattgttt 841 |||||||||||||||||||||| Sbjct: 71827 gcctgctctgtgtgtattgttt 71848
>gb|AC159194.3| Mus musculus BAC clone RP23-469D18 from chromosome 7, complete sequence Length = 213870 Score = 44.1 bits (22), Expect = 1.0 Identities = 22/22 (100%) Strand = Plus / Plus Query: 820 gcctgctctgtgtgtattgttt 841 |||||||||||||||||||||| Sbjct: 128686 gcctgctctgtgtgtattgttt 128707
>emb|CU207366.1| Gramella forsetii KT0803 complete genome Length = 3798465 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 884 aagaacctgttcctctttttt 904 ||||||||||||||||||||| Sbjct: 690556 aagaacctgttcctctttttt 690576
>emb|AL611922.7| Human DNA sequence from clone RP11-633N4 on chromosome 9, complete sequence Length = 176612 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 510 agatgccatggaacaggatgg 530 ||||||||||||||||||||| Sbjct: 75524 agatgccatggaacaggatgg 75504
>emb|AL049744.8|HSJ177P10 Human DNA sequence from clone RP1-177P10 on chromosome 1q31.2-32.1 Contains the HF1 gene for H factor 1 (complement) protein, complete sequence Length = 150626 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 543 tgacaaatcatcagtgagttt 563 ||||||||||||||||||||| Sbjct: 139262 tgacaaatcatcagtgagttt 139282
>emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5 Length = 341050 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 taaaaatgattcaaaggatga 482 ||||||||||||||||||||| Sbjct: 327440 taaaaatgattcaaaggatga 327460
>emb|AL844592.6| Mouse DNA sequence from clone RP23-244J24 on chromosome 2, complete sequence Length = 197462 Score = 42.1 bits (21), Expect = 4.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 497 cagatgatgatgcagatgccatgga 521 |||||||||||||||| |||||||| Sbjct: 172385 cagatgatgatgcagaggccatgga 172409
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 4.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 808 gcacgcagttgcgcctgctct 828 ||||||||||||||||||||| Sbjct: 5595038 gcacgcagttgcgcctgctct 5595058 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 177,043,398 Number of extensions: 9278762 Number of successful extensions: 176678 Number of sequences better than 10.0: 24 Number of HSP's gapped: 176674 Number of HSP's successfully gapped: 31 Length of query: 1054 Length of database: 18,610,659,111 Length adjustment: 23 Effective length of query: 1031 Effective length of database: 18,503,978,556 Effective search space: 19077601891236 Effective search space used: 19077601891236 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)
