ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf151e16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O00337:S28A1_HUMAN Sodium/nucleoside cotransporter 1 - Homo sapi... 33 3.7
2P23803:ODD_DROME Protein odd-skipped - Drosophila melanogaster (... 32 6.3
3P29130:PHYB_TOBAC Phytochrome B - Nicotiana tabacum (Common toba... 32 8.2

>O00337:S28A1_HUMAN Sodium/nucleoside cotransporter 1 - Homo sapiens (Human)|
          Length = 649
 Score = 33.1 bits (74), Expect = 3.7
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 404 GGVAAWMPTGRSPTSFLTTYGRRTRSGVRMVRGCRSFLT----GATGSCSTMCLTCLPSS 571
           GG+ + +P  +S  S +      T + V +V  C + +     GA   C ++  T L SS
Sbjct: 552 GGLTSMVPQRKSDFSQIVLRALFTGACVSLVNACMAGILYMPRGAEVDCMSLLNTTLSSS 611

Query: 572 SMETHQSCR 598
           S E +Q CR
Sbjct: 612 SFEIYQCCR 620



to top

>P23803:ODD_DROME Protein odd-skipped - Drosophila melanogaster (Fruit fly)|
          Length = 392

 Score = 32.3 bits (72), Expect = 6.3
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = -3

Query: 679 HNHCYHHCWNHGNLHHCHP*YVLGWKMPAGLMSLHRA 569
           H H +HH   HG+ HH HP        PAGL SLH A
Sbjct: 150 HPHHHHH---HGHPHHPHPHPHHVRPYPAGLHSLHAA 183



to top

>P29130:PHYB_TOBAC Phytochrome B - Nicotiana tabacum (Common tobacco)|
          Length = 1132

 Score = 32.0 bits (71), Expect = 8.2
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +1

Query: 793  CREPLTDKISSLSARFPGLRTLRSCDLSARSWMSIAWYPIYRIPTGPTLKDLDACFLTFH 972
            C   L D  + +  + P +  L  CD  A  +    +YP+   PT   +KD+    LT+H
Sbjct: 428  CDMLLRDSPTGIVIQSPSIMDLVKCD-GAALYCQGKYYPLGVTPTEAQIKDIVEWLLTYH 486

Query: 973  QLSNCLQGDNL 1005
              S  L  D+L
Sbjct: 487  GDSTGLSTDSL 497


  Database: uniprot_sprot.fasta.out
    Posted date:  Jul 19, 2007  5:58 PM
  Number of letters in database: 100,686,439
  Number of sequences in database:  274,295
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 274295
Number of Hits to DB: 310,149,073
Number of extensions: 6923249
Number of successful extensions: 18070
Number of sequences better than 10.0: 3
Number of HSP's gapped: 17912
Number of HSP's successfully gapped: 3
Length of query: 573
Length of database: 100,686,439
Length adjustment: 119
Effective length of query: 454
Effective length of database: 68,045,334
Effective search space: 30892581636
Effective search space used: 30892581636
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top