| Clone Name | FLbaf154c05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY090535.1| Deschampsia antarctica unknown cold induced protein mRNA, complete cds; nuclear gene for plastid product Length = 774 Score = 127 bits (64), Expect = 7e-26 Identities = 129/150 (86%), Gaps = 3/150 (2%) Strand = Plus / Plus Query: 277 gcgtctacgatctgtcgtcgatgaaggcagagctctccgtcaagaaaggggggttgtcca 336 |||||||||| ||||||| |||||||||| ||| | ||||||||||| ||||||| Sbjct: 315 gcgtctacgacatgtcgtctgtgaaggcagaactccctatcaagaaaggg---ttgtcca 371 Query: 337 agtactacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcctggagg 396 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| | Sbjct: 372 gatactacgacggcaagtcccagtccttcgcgtgcatgtccgaggtcagatgcctggaag 431 Query: 397 acctgcccaagaagagaccctacaacaaga 426 | |||||||||||||| || ||||| |||| Sbjct: 432 atctgcccaagaagagcccgtacaagaaga 461 Score = 63.9 bits (32), Expect = 9e-07 Identities = 53/60 (88%) Strand = Plus / Plus Query: 149 ggaagacgaggacctgttcgagacctcctcctccttctcctgcgactccgacgacgaggc 208 ||||||||| || |||||||||||||| || ||| ||||||||||||| ||||| ||||| Sbjct: 169 ggaagacgaagatctgttcgagacctcgtcttccatctcctgcgactcagacgatgaggc 228 Score = 48.1 bits (24), Expect = 0.052 Identities = 36/40 (90%) Strand = Plus / Plus Query: 578 catgctctacaggcctcccgccatccccgtcaacaagagc 617 ||||||||||||||||||||| || || || ||||||||| Sbjct: 604 catgctctacaggcctcccgcgattcctgtgaacaagagc 643
>ref|NM_001062622.1| Oryza sativa (japonica cultivar-group) Os05g0524100 (Os05g0524100) mRNA, partial cds Length = 974 Score = 119 bits (60), Expect = 2e-23 Identities = 78/84 (92%) Strand = Plus / Plus Query: 327 gggttgtccaagtactacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgagg 386 |||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 476 gggttgtccaggtactacgaggggaagtcccagtcgttcgcgtgcatgtcggaggtgagg 535 Query: 387 tgcctggaggacctgcccaagaag 410 ||||||||||| |||| ||||||| Sbjct: 536 tgcctggaggatctgcgcaagaag 559
>gb|AC144740.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0075A10, complete sequence Length = 171101 Score = 119 bits (60), Expect = 2e-23 Identities = 78/84 (92%) Strand = Plus / Plus Query: 327 gggttgtccaagtactacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgagg 386 |||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 128981 gggttgtccaggtactacgaggggaagtcccagtcgttcgcgtgcatgtcggaggtgagg 129040 Query: 387 tgcctggaggacctgcccaagaag 410 ||||||||||| |||| ||||||| Sbjct: 129041 tgcctggaggatctgcgcaagaag 129064
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 119 bits (60), Expect = 2e-23 Identities = 78/84 (92%) Strand = Plus / Plus Query: 327 gggttgtccaagtactacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgagg 386 |||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 25887449 gggttgtccaggtactacgaggggaagtcccagtcgttcgcgtgcatgtcggaggtgagg 25887508 Query: 387 tgcctggaggacctgcccaagaag 410 ||||||||||| |||| ||||||| Sbjct: 25887509 tgcctggaggatctgcgcaagaag 25887532 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 cctcctcctccttctcctgcgactccgac 200 |||||||||||| ||||| |||||||||| Sbjct: 19624654 cctcctcctcctcctcctccgactccgac 19624626
>dbj|AK067043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B04, full insert sequence Length = 977 Score = 119 bits (60), Expect = 2e-23 Identities = 78/84 (92%) Strand = Plus / Plus Query: 327 gggttgtccaagtactacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgagg 386 |||||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||| Sbjct: 477 gggttgtccaggtactacgaggggaagtcccagtcgttcgcgtgcatgtcggaggtgagg 536 Query: 387 tgcctggaggacctgcccaagaag 410 ||||||||||| |||| ||||||| Sbjct: 537 tgcctggaggatctgcgcaagaag 560
>gb|DQ246133.1| Zea mays clone 93234 mRNA sequence Length = 887 Score = 97.6 bits (49), Expect = 6e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 338 gtactacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcctggagga 397 ||||||||| |||||||| ||||| ||||||||||||||||||||| | ||||||||||| Sbjct: 444 gtactacgagggcaagtcgcagtcgttcgcgtgcatgtcggaggtgcgctgcctggagga 503 Query: 398 cctgcccaagaag 410 ||||| ||||||| Sbjct: 504 cctgcgcaagaag 516
>gb|DQ244255.1| Zea mays clone 3917 mRNA sequence Length = 762 Score = 97.6 bits (49), Expect = 6e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 338 gtactacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcctggagga 397 ||||||||| |||||||| ||||| ||||||||||||||||||||| | ||||||||||| Sbjct: 339 gtactacgagggcaagtcgcagtcgttcgcgtgcatgtcggaggtgcgctgcctggagga 398 Query: 398 cctgcccaagaag 410 ||||| ||||||| Sbjct: 399 cctgcgcaagaag 411
>gb|AY111310.1| Zea mays CL13668_1 mRNA sequence Length = 528 Score = 93.7 bits (47), Expect = 1e-15 Identities = 65/71 (91%) Strand = Plus / Minus Query: 340 actacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcctggaggacc 399 ||||||| |||||||||||||| ||||||||||||||||||||| | |||||||| |||| Sbjct: 427 actacgagggcaagtcccagtcgttcgcgtgcatgtcggaggtgcgctgcctggacgacc 368 Query: 400 tgcccaagaag 410 ||| ||||||| Sbjct: 367 tgcgcaagaag 357
>gb|DQ245490.1| Zea mays clone 16111 mRNA sequence Length = 853 Score = 85.7 bits (43), Expect = 2e-13 Identities = 64/71 (90%) Strand = Plus / Plus Query: 339 tactacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcctggaggac 398 |||||||||||||||||||||||||||||||||||||| || ||| | |||||||| || Sbjct: 347 tactacgacggcaagtcccagtccttcgcgtgcatgtctgaagtgcgatgcctggaagat 406 Query: 399 ctgcccaagaa 409 |||| |||||| Sbjct: 407 ctgcgcaagaa 417 Score = 46.1 bits (23), Expect = 0.20 Identities = 47/55 (85%) Strand = Plus / Plus Query: 153 gacgaggacctgttcgagacctcctcctccttctcctgcgactccgacgacgagg 207 |||||||| ||||||||||| || || || ||||| ||||||||||||| |||| Sbjct: 206 gacgaggagctgttcgagacgtcgtcttcgatctccggcgactccgacgatgagg 260
>ref|NM_001050732.1| Oryza sativa (japonica cultivar-group) Os01g0739500 (Os01g0739500) mRNA, complete cds Length = 1068 Score = 58.0 bits (29), Expect = 5e-05 Identities = 106/131 (80%), Gaps = 3/131 (2%) Strand = Plus / Plus Query: 280 tctacgatctgtcgtcgatgaaggcagagctctccgtcaagaaaggggggttgtccaagt 339 ||||||||||||| || ||||||||| | ||| | ||||||||| || || ||||| | Sbjct: 308 tctacgatctgtcatctatgaaggcacaactccctgtcaagaaa---ggattatccaaat 364 Query: 340 actacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcctggaggacc 399 |||||||||| ||||| || || || || || ||||| |||||||| ||||| ||||| | Sbjct: 365 actacgacggaaagtctcaatcttttgcatgtatgtctgaggtgagatgcctagaggatc 424 Query: 400 tgcccaagaag 410 | | ||||||| Sbjct: 425 tacgcaagaag 435
>dbj|AK121118.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074B04, full insert sequence Length = 1070 Score = 58.0 bits (29), Expect = 5e-05 Identities = 106/131 (80%), Gaps = 3/131 (2%) Strand = Plus / Plus Query: 280 tctacgatctgtcgtcgatgaaggcagagctctccgtcaagaaaggggggttgtccaagt 339 ||||||||||||| || ||||||||| | ||| | ||||||||| || || ||||| | Sbjct: 309 tctacgatctgtcatctatgaaggcacaactccctgtcaagaaa---ggattatccaaat 365 Query: 340 actacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcctggaggacc 399 |||||||||| ||||| || || || || || ||||| |||||||| ||||| ||||| | Sbjct: 366 actacgacggaaagtctcaatcttttgcatgtatgtctgaggtgagatgcctagaggatc 425 Query: 400 tgcccaagaag 410 | | ||||||| Sbjct: 426 tacgcaagaag 436
>gb|DQ245487.1| Zea mays clone 16093 mRNA sequence Length = 792 Score = 56.0 bits (28), Expect = 2e-04 Identities = 58/68 (85%) Strand = Plus / Plus Query: 342 tacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcctggaggacctg 401 |||||||||||||||||||||| ||| ||||||| || ||| | |||||||| || ||| Sbjct: 289 tacgacggcaagtcccagtcctcagcgcgcatgtctgaagtgcgatgcctggaagatctg 348 Query: 402 cccaagaa 409 | |||||| Sbjct: 349 cgcaagaa 356
>emb|CT828166.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B05, full insert sequence Length = 952 Score = 56.0 bits (28), Expect = 2e-04 Identities = 96/118 (81%), Gaps = 3/118 (2%) Strand = Plus / Plus Query: 280 tctacgatctgtcgtcgatgaaggcagagctctccgtcaagaaaggggggttgtccaagt 339 ||||||||||||| || ||||||||| | ||| | ||||||||| || || ||||| | Sbjct: 383 tctacgatctgtcatctatgaaggcacaactccctgtcaagaaa---ggattatccaaat 439 Query: 340 actacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcctggagga 397 |||||||||| ||||| || || || || || ||||| |||||||| ||||| ||||| Sbjct: 440 actacgacggaaagtctcaatcttttgcatgtatgtctgaggtgagatgcctagagga 497
>gb|BT019309.1| Zea mays clone Contig982.F mRNA sequence Length = 723 Score = 50.1 bits (25), Expect = 0.013 Identities = 64/77 (83%) Strand = Plus / Minus Query: 331 tgtccaagtactacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcc 390 ||||||||| || |||||||||||| ||||| ||||||| || ||| |||| | ||| Sbjct: 480 tgtccaagttcttcgacggcaagtcgcagtcgttcgcgtcgctggcggcggtgggcggcc 421 Query: 391 tggaggacctgcccaag 407 | ||||||||||||||| Sbjct: 420 tcgaggacctgcccaag 404
>gb|DQ244378.1| Zea mays clone 6646 mRNA sequence Length = 811 Score = 46.1 bits (23), Expect = 0.20 Identities = 35/39 (89%) Strand = Plus / Plus Query: 331 tgtccaagtactacgacggcaagtcccagtccttcgcgt 369 ||||||||| || |||||||||||| ||||| ||||||| Sbjct: 353 tgtccaagttcttcgacggcaagtcgcagtcgttcgcgt 391
>gb|BC125821.1| Danio rerio cDNA clone IMAGE:7428768, partial cds Length = 3000 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 705 ttgtcaaatgtaaagaggcttt 726 |||||||||||||||||||||| Sbjct: 2653 ttgtcaaatgtaaagaggcttt 2674
>ref|NM_001064957.1| Oryza sativa (japonica cultivar-group) Os06g0691400 (Os06g0691400) mRNA, complete cds Length = 2042 Score = 44.1 bits (22), Expect = 0.80 Identities = 28/30 (93%) Strand = Plus / Plus Query: 174 tcctcctccttctcctgcgactccgacgac 203 |||||||||| ||||| ||||||||||||| Sbjct: 1552 tcctcctcctcctcctccgactccgacgac 1581
>gb|AE014134.5| Drosophila melanogaster chromosome 2L, complete sequence Length = 23011544 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 cctcctcctccttctcctgcgactcc 197 ||||||||||||||||||||| |||| Sbjct: 5332464 cctcctcctccttctcctgcgcctcc 5332489 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 acctcctcctccttctcctgc 191 ||||||||||||||||||||| Sbjct: 441363 acctcctcctccttctcctgc 441383
>gb|AE014296.4| Drosophila melanogaster chromosome 3L, complete sequence Length = 24543557 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 caaagagcaacagcaacagcaa 41 |||||||||||||||||||||| Sbjct: 14390781 caaagagcaacagcaacagcaa 14390760
>gb|AC008325.5| Drosophila melanogaster clone BACR05M06, complete sequence Length = 166423 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 cctcctcctccttctcctgcgactcc 197 ||||||||||||||||||||| |||| Sbjct: 105974 cctcctcctccttctcctgcgcctcc 105999
>gb|AC140455.2| Mus musculus BAC clone RP23-24B2 from chromosome 18, complete sequence Length = 242533 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 168 gagacctcctcctccttctcct 189 |||||||||||||||||||||| Sbjct: 45618 gagacctcctcctccttctcct 45639
>gb|AC117260.3| Mus musculus BAC clone RP24-498G10 from chromosome 18, complete sequence Length = 211919 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 168 gagacctcctcctccttctcct 189 |||||||||||||||||||||| Sbjct: 119061 gagacctcctcctccttctcct 119082
>ref|NM_164640.1| Drosophila melanogaster CG14021-RA, transcript variant A (CG14021), mRNA Length = 2618 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Minus Query: 172 cctcctcctccttctcctgcgactcc 197 ||||||||||||||||||||| |||| Sbjct: 807 cctcctcctccttctcctgcgcctcc 782
>ref|NM_135079.4| Drosophila melanogaster CG14021-RB, transcript variant B (CG14021), mRNA Length = 2411 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Minus Query: 172 cctcctcctccttctcctgcgactcc 197 ||||||||||||||||||||| |||| Sbjct: 600 cctcctcctccttctcctgcgcctcc 575
>ref|XM_447478.1| Candida glabrata CBS138 hypothetical protein (CAGL0I05236g) partial mRNA Length = 1215 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 20 caaagagcaacagcaacagcaa 41 |||||||||||||||||||||| Sbjct: 257 caaagagcaacagcaacagcaa 278
>ref|XM_755900.1| Ustilago maydis 521 hypothetical protein (UM04846.1) partial mRNA Length = 3381 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 22 aagagcaacagcaacagcaaga 43 |||||||||||||||||||||| Sbjct: 3125 aagagcaacagcaacagcaaga 3146
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 447 cacgtcgagatcgacggtgacc 468 |||||||||||||||||||||| Sbjct: 836020 cacgtcgagatcgacggtgacc 835999
>gb|AC010048.5| Drosophila melanogaster 3L BAC RP98-5B23 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175316 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 caaagagcaacagcaacagcaa 41 |||||||||||||||||||||| Sbjct: 142573 caaagagcaacagcaacagcaa 142552
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 44.1 bits (22), Expect = 0.80 Identities = 28/30 (93%) Strand = Plus / Minus Query: 174 tcctcctccttctcctgcgactccgacgac 203 |||||||||| ||||| ||||||||||||| Sbjct: 28448485 tcctcctcctcctcctccgactccgacgac 28448456
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 44.1 bits (22), Expect = 0.80 Identities = 64/78 (82%) Strand = Plus / Minus Query: 333 tccaagtactacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcctg 392 ||||| ||||||||||| ||||| || || || || || ||||| |||||||| ||||| Sbjct: 30879140 tccaaatactacgacggaaagtctcaatcttttgcatgtatgtctgaggtgagatgccta 30879081 Query: 393 gaggacctgcccaagaag 410 ||||| || | ||||||| Sbjct: 30879080 gaggatctacgcaagaag 30879063
>gb|AY058386.1| Drosophila melanogaster GH14865 full length cDNA Length = 1944 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Minus Query: 172 cctcctcctccttctcctgcgactcc 197 ||||||||||||||||||||| |||| Sbjct: 117 cctcctcctccttctcctgcgcctcc 92
>ref|XM_649210.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (57.t00017) partial mRNA Length = 1110 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 22 aagagcaacagcaacagcaagagaaa 47 ||||||||||| |||||||||||||| Sbjct: 585 aagagcaacaggaacagcaagagaaa 610
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0638D12 Length = 161277 Score = 44.1 bits (22), Expect = 0.80 Identities = 64/78 (82%) Strand = Plus / Minus Query: 333 tccaagtactacgacggcaagtcccagtccttcgcgtgcatgtcggaggtgaggtgcctg 392 ||||| ||||||||||| ||||| || || || || || ||||| |||||||| ||||| Sbjct: 79507 tccaaatactacgacggaaagtctcaatcttttgcatgtatgtctgaggtgagatgccta 79448 Query: 393 gaggacctgcccaagaag 410 ||||| || | ||||||| Sbjct: 79447 gaggatctacgcaagaag 79430
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 239 gccggcctccccgccggcgcgc 260 |||||||||||||||||||||| Sbjct: 2037328 gccggcctccccgccggcgcgc 2037349
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 caaagagcaacagcaacagcaa 41 |||||||||||||||||||||| Sbjct: 497672 caaagagcaacagcaacagcaa 497651
>dbj|AP005457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0532H03 Length = 166128 Score = 44.1 bits (22), Expect = 0.80 Identities = 28/30 (93%) Strand = Plus / Minus Query: 174 tcctcctccttctcctgcgactccgacgac 203 |||||||||| ||||| ||||||||||||| Sbjct: 55518 tcctcctcctcctcctccgactccgacgac 55489
>emb|BX511237.5| Zebrafish DNA sequence from clone CH211-251M3 in linkage group 5, complete sequence Length = 52527 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Minus Query: 705 ttgtcaaatgtaaagaggcttt 726 |||||||||||||||||||||| Sbjct: 40741 ttgtcaaatgtaaagaggcttt 40720
>dbj|AK107208.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-B11, full insert sequence Length = 2043 Score = 44.1 bits (22), Expect = 0.80 Identities = 28/30 (93%) Strand = Plus / Plus Query: 174 tcctcctccttctcctgcgactccgacgac 203 |||||||||| ||||| ||||||||||||| Sbjct: 1552 tcctcctcctcctcctccgactccgacgac 1581
>ref|NM_152982.2| Danio rerio myosin, heavy polypeptide 2, fast muscle specific (myhz2), mRNA gb|BC071279.1| Danio rerio myosin, heavy polypeptide 2, fast muscle specific, mRNA (cDNA clone MGC:85728 IMAGE:6969669), complete cds Length = 5991 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 705 ttgtcaaatgtaaagaggcttt 726 |||||||||||||||||||||| Sbjct: 2616 ttgtcaaatgtaaagaggcttt 2637
>ref|NM_001017123.2| Xenopus tropicalis ubiquitin-like 7 (bone marrow stromal cell-derived) (ubl7), mRNA emb|CR761134.2| Xenopus tropicalis finished cDNA, clone TEgg085c12 Length = 1391 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 575 cagcatgctctacaggcctcccgcca 600 ||||||||||||||||||||| |||| Sbjct: 995 cagcatgctctacaggcctccagcca 1020
>gb|BC084315.1| Xenopus laevis hypothetical LOC495126, mRNA (cDNA clone IMAGE:7008166), partial cds Length = 1447 Score = 44.1 bits (22), Expect = 0.80 Identities = 25/26 (96%) Strand = Plus / Plus Query: 575 cagcatgctctacaggcctcccgcca 600 ||||||||||||||||||||| |||| Sbjct: 1043 cagcatgctctacaggcctccagcca 1068
>emb|BX005415.5| Zebrafish DNA sequence from clone DKEY-21I5 in linkage group 5, complete sequence Length = 243510 Score = 44.1 bits (22), Expect = 0.80 Identities = 22/22 (100%) Strand = Plus / Plus Query: 705 ttgtcaaatgtaaagaggcttt 726 |||||||||||||||||||||| Sbjct: 222447 ttgtcaaatgtaaagaggcttt 222468
>gb|DQ245444.1| Zea mays clone 15572 mRNA sequence Length = 811 Score = 42.1 bits (21), Expect = 3.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 331 tgtccaagtactacgacggcaagtcccagtccttcgc 367 |||||| || || |||||||||||| ||||||||||| Sbjct: 304 tgtccaggttcttcgacggcaagtcgcagtccttcgc 340
>emb|CT832031.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA050N19, full insert sequence Length = 1012 Score = 42.1 bits (21), Expect = 3.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 333 tccaagtactacgacggcaagtcccagtccttcgcgt 369 ||||||| || |||||||||||| ||||| ||||||| Sbjct: 419 tccaagttcttcgacggcaagtcgcagtcgttcgcgt 455
>ref|NM_001062045.1| Oryza sativa (japonica cultivar-group) Os05g0405900 (Os05g0405900) mRNA, complete cds Length = 3940 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 cctcctcctccttctcctgcgactccgac 200 |||||||||||| ||||| |||||||||| Sbjct: 117 cctcctcctcctcctcctccgactccgac 89
>ref|NM_001060197.1| Oryza sativa (japonica cultivar-group) Os04g0583200 (Os04g0583200) mRNA, complete cds Length = 963 Score = 42.1 bits (21), Expect = 3.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 333 tccaagtactacgacggcaagtcccagtccttcgcgt 369 ||||||| || |||||||||||| ||||| ||||||| Sbjct: 370 tccaagttcttcgacggcaagtcgcagtcgttcgcgt 406
>ref|XM_838894.1| Trypanosoma brucei hypothetical protein, conserved (Tb927.3.3950) mRNA, complete cds Length = 1653 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 172 cctcctcctccttctcctgcgactc 196 |||||||||||| |||||||||||| Sbjct: 1243 cctcctcctcctcctcctgcgactc 1219
>gb|AE013599.4| Drosophila melanogaster chromosome 2R, complete sequence Length = 21146708 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctcctcctccttctcctgcga 193 ||||||||||||||||||||| Sbjct: 5693617 ctcctcctccttctcctgcga 5693597
>gb|AE014298.4| Drosophila melanogaster chromosome X, complete sequence Length = 22422827 Score = 42.1 bits (21), Expect = 3.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 17 aagcaaagagcaacagcaacagcaagagaaaga 49 ||||||| ||||| |||||||||||||| |||| Sbjct: 3271826 aagcaaaaagcaagagcaacagcaagagcaaga 3271858
>emb|CT573504.2| Medicago truncatula chromosome 5 clone mth2-178o19, COMPLETE SEQUENCE Length = 132030 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 745 gaagacattgattgattcagt 765 ||||||||||||||||||||| Sbjct: 7405 gaagacattgattgattcagt 7385
>ref|XM_370202.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06699.4) partial mRNA Length = 1206 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 aagagcaacagcaacagcaag 42 ||||||||||||||||||||| Sbjct: 1022 aagagcaacagcaacagcaag 1042
>gb|AC159430.1| Trypanosoma brucei chromosome 3 clone RPCI93-28C22, complete sequence Length = 142068 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 172 cctcctcctccttctcctgcgactc 196 |||||||||||| |||||||||||| Sbjct: 38764 cctcctcctcctcctcctgcgactc 38788
>gb|BT019268.1| Zea mays clone Contig941.F mRNA sequence Length = 904 Score = 42.1 bits (21), Expect = 3.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 331 tgtccaagtactacgacggcaagtcccagtccttcgc 367 |||||| || || |||||||||||| ||||||||||| Sbjct: 512 tgtccaggttcttcgacggcaagtcgcagtccttcgc 476
>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11, complete sequence Length = 102567 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 cctcctcctccttctcctgcgactccgac 200 |||||||||||| ||||| |||||||||| Sbjct: 84553 cctcctcctcctcctcctccgactccgac 84525
>gb|AC150551.1| Drosophila melanogaster clone BACR16A12, complete sequence Length = 185417 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 acctcctcctccttctcctgc 191 ||||||||||||||||||||| Sbjct: 101930 acctcctcctccttctcctgc 101950
>gb|AC133179.3| Mus musculus BAC clone RP24-134P14 from chromosome 14, complete sequence Length = 160216 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 22 aagagcaacagcaacagcaagagaaagaa 50 |||||||| ||||| |||||||||||||| Sbjct: 25293 aagagcaagagcaagagcaagagaaagaa 25265
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 638 gcggtgccattccgcgcctcttctt 662 |||||||||||||||||| |||||| Sbjct: 1790161 gcggtgccattccgcgccgcttctt 1790185
>gb|AC133000.5| Rattus Norvegicus Strain CH230-62B6 BAC, BN/SsNHsd/MCW, complete sequence Length = 245581 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 cctcctcctccttctcctgcgactccgac 200 |||||||||||| ||||| |||||||||| Sbjct: 229912 cctcctcctcctgctcctccgactccgac 229884
>dbj|AK057210.1| Homo sapiens cDNA FLJ32648 fis, clone SYNOV2001451, highly similar to MYOCYTE-SPECIFIC ENHANCER FACTOR 2B Length = 1683 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 343 acgacggcaagtcccagtcct 363 ||||||||||||||||||||| Sbjct: 993 acgacggcaagtcccagtcct 1013
>gb|AY823630.2| Aplysia californica pannexin 7 mRNA, complete cds Length = 1272 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 acctcctcctccttctcctgc 191 ||||||||||||||||||||| Sbjct: 1179 acctcctcctccttctcctgc 1159
>gb|AC108480.3| Drosophila melanogaster X BAC RP98-2A13 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175996 Score = 42.1 bits (21), Expect = 3.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 17 aagcaaagagcaacagcaacagcaagagaaaga 49 ||||||| ||||| |||||||||||||| |||| Sbjct: 166009 aagcaaaaagcaagagcaacagcaagagcaaga 165977
>emb|CT005239.3| Pan troglodytes chromosome X clone PTB-125H24 map Xq28, complete sequence Length = 262483 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 acctcctcctccttctcctgc 191 ||||||||||||||||||||| Sbjct: 224769 acctcctcctccttctcctgc 224789
>gb|AC115482.2| Drosophila melanogaster, chromosome 2L, region 21D-21D, BAC clone BACR04A24, complete sequence Length = 166677 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 acctcctcctccttctcctgc 191 ||||||||||||||||||||| Sbjct: 107360 acctcctcctccttctcctgc 107380
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4 Length = 35498469 Score = 42.1 bits (21), Expect = 3.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 333 tccaagtactacgacggcaagtcccagtccttcgcgt 369 ||||||| || |||||||||||| ||||| ||||||| Sbjct: 29439708 tccaagttcttcgacggcaagtcgcagtcgttcgcgt 29439672
>emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence Length = 186325 Score = 42.1 bits (21), Expect = 3.2 Identities = 33/37 (89%) Strand = Plus / Minus Query: 333 tccaagtactacgacggcaagtcccagtccttcgcgt 369 ||||||| || |||||||||||| ||||| ||||||| Sbjct: 112724 tccaagttcttcgacggcaagtcgcagtcgttcgcgt 112688
>emb|AL121800.1|DMBN5I9 Drosophila melanogaster BAC clone BACN5I9 Length = 96433 Score = 42.1 bits (21), Expect = 3.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 17 aagcaaagagcaacagcaacagcaagagaaaga 49 ||||||| ||||| |||||||||||||| |||| Sbjct: 18803 aagcaaaaagcaagagcaacagcaagagcaaga 18771
>emb|AJ439353.1|AGA439353 Anopheles gambiae BAC clone 30E5 Length = 167014 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 caaagagcaacagcaacagca 40 ||||||||||||||||||||| Sbjct: 76368 caaagagcaacagcaacagca 76388
>gb|AC007330.6|AC007330 Drosophila melanogaster, chromosome 2R, region 46C-46D, BAC clone BACR30G11, complete sequence Length = 166854 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 173 ctcctcctccttctcctgcga 193 ||||||||||||||||||||| Sbjct: 17320 ctcctcctccttctcctgcga 17300
>dbj|AK073181.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001M05, full insert sequence Length = 964 Score = 42.1 bits (21), Expect = 3.2 Identities = 33/37 (89%) Strand = Plus / Plus Query: 333 tccaagtactacgacggcaagtcccagtccttcgcgt 369 ||||||| || |||||||||||| ||||| ||||||| Sbjct: 372 tccaagttcttcgacggcaagtcgcagtcgttcgcgt 408
>dbj|AK072244.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003F07, full insert sequence Length = 3941 Score = 42.1 bits (21), Expect = 3.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 172 cctcctcctccttctcctgcgactccgac 200 |||||||||||| ||||| |||||||||| Sbjct: 118 cctcctcctcctcctcctccgactccgac 90
>gb|AC163704.4| Gallus gallus BAC clone CH261-114A20 from chromosome ul, complete sequence Length = 198816 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 747 agacattgattgattcagtgt 767 ||||||||||||||||||||| Sbjct: 20274 agacattgattgattcagtgt 20254
>ref|XM_321553.2| Anopheles gambiae str. PEST ENSANGP00000018166 (ENSANGG00000015677), partial mRNA Length = 1017 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 20 caaagagcaacagcaacagca 40 ||||||||||||||||||||| Sbjct: 828 caaagagcaacagcaacagca 848
>gb|AC002126.1|AC002126 Homo sapiens DNA from chromosome 19-cosmids R30102:R29350:R27740 containing MEF2B, genomic sequence, complete sequence Length = 89818 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 343 acgacggcaagtcccagtcct 363 ||||||||||||||||||||| Sbjct: 36993 acgacggcaagtcccagtcct 36973
>gb|AC005762.1|AC005762 Drosophila melanogaster DNA sequence (P1s DS00679 (D272) and DS05054 (D135)), complete sequence Length = 81053 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 acctcctcctccttctcctgc 191 ||||||||||||||||||||| Sbjct: 80749 acctcctcctccttctcctgc 80769
>gb|AC005269.1|AC005269 Drosophila melanogaster DNA sequence (P1s DS00764 (D273) and DS00501 (D274)), complete sequence Length = 104278 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 acctcctcctccttctcctgc 191 ||||||||||||||||||||| Sbjct: 4892 acctcctcctccttctcctgc 4912
>emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2-105d20, COMPLETE SEQUENCE Length = 131814 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 745 gaagacattgattgattcagt 765 ||||||||||||||||||||| Sbjct: 3299 gaagacattgattgattcagt 3319
>emb|AL833803.8| Mouse DNA sequence from clone RP23-244H7 on chromosome 2, complete sequence Length = 226251 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 173 ctcctcctccttctcctgcgactcc 197 |||||||||||||||||||| |||| Sbjct: 149829 ctcctcctccttctcctgcgcctcc 149805
>emb|CT010501.6| Mouse DNA sequence from clone RP23-333D13 on chromosome 17, complete sequence Length = 207346 Score = 42.1 bits (21), Expect = 3.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 tgttcgagacctcctcctccttctc 187 ||||||| ||||||||||||||||| Sbjct: 140876 tgttcgacacctcctcctccttctc 140852
>emb|AL669975.9| Mouse DNA sequence from clone RP23-218H24 on chromosome X, complete sequence Length = 230634 Score = 42.1 bits (21), Expect = 3.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 aaagagcaacagcaacagcaa 41 ||||||||||||||||||||| Sbjct: 180282 aaagagcaacagcaacagcaa 180262 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 145,249,732 Number of extensions: 8873516 Number of successful extensions: 469860 Number of sequences better than 10.0: 79 Number of HSP's gapped: 469855 Number of HSP's successfully gapped: 84 Length of query: 844 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 822 Effective length of database: 18,508,616,841 Effective search space: 15214083043302 Effective search space used: 15214083043302 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)