ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf160o08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete ... 48 0.024
2gb|AF031396.1| Poecilia parae NADH dehydrogenase subunit 2 gene,... 48 0.024
3emb|BX284752.1|NCB23B10 Neurospora crassa DNA linkage group II B... 46 0.095
4ref|XM_951988.1| Neurospora crassa OR74A hypothetical protein (N... 46 0.095
5emb|Y10813.1|HVPRPB H.vulgare mRNA for pathogenic related protei... 46 0.095
6gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.38
7gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome 42 1.5
8gb|AF353200.1|AF353200 Limia sp. La Zufrada tRNA-Met gene, parti... 42 1.5
9gb|AF353199.1|AF353199 Limia sp. La Zurza tRNA-Met gene, partial... 42 1.5
10gb|AF353198.1|AF353198 Limia sp. Las Salinas tRNA-Met gene, part... 42 1.5
11gb|AF353197.1|AF353197 Limia melanonotata tRNA-Met gene, partial... 42 1.5
12emb|AL928933.7| Mouse DNA sequence from clone RP23-419H6 on chro... 42 1.5
13dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.5
14gb|AF031399.1| Poecilia heterandria NADH dehydrogenase subunit 2... 42 1.5
15gb|AF031392.1| Poecilia perugiae NADH dehydrogenase subunit 2 ge... 42 1.5
16gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete ... 40 5.9
17ref|XM_499765.1| Yarrowia lipolytica CLIB122, YALI0A04873g predi... 40 5.9
18gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome... 40 5.9
19gb|AC124366.4| Mus musculus BAC clone RP24-541E9 from chromosome... 40 5.9
20gb|AC023912.5|ATAC023912 Arabidopsis thaliana chromosome III BAC... 40 5.9
21gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 5.9
22gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome... 40 5.9
23gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.9
24gb|AF080488.1| Poecilia mexicana limantouri NADH dehydrogenase s... 40 5.9
25gb|AY007523.1| Pseudomonas fluorescens AlgH (algH), hypothetical... 40 5.9
26emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 5.9
27emb|AL683800.9| Mouse DNA sequence from clone RP23-405B8 on chro... 40 5.9 
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706
 Score = 48.1 bits (24), Expect = 0.024
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 91     cgccgcgcaggccgtgctcgccgccagaggcc 122
              ||||||||||||||| ||||||||| ||||||
Sbjct: 139148 cgccgcgcaggccgttctcgccgcccgaggcc 139117
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>gb|AF031396.1| Poecilia parae NADH dehydrogenase subunit 2 gene, mitochondrial
          gene encoding mitochondrial protein, complete cds
          Length = 1105

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 17 atccttcctttagcaatggctcccctca 44
          |||||||||||| |||||||||||||||
Sbjct: 18 atccttcctttaccaatggctcccctca 45
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>emb|BX284752.1|NCB23B10 Neurospora crassa DNA linkage group II BAC contig B23B10
          Length = 99967

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 176   ccaaatccaccttgtgacccagc 198
             |||||||||||||||||||||||
Sbjct: 31276 ccaaatccaccttgtgacccagc 31254
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>ref|XM_951988.1| Neurospora crassa OR74A hypothetical protein (NCU05095.1) partial
            mRNA
          Length = 1554

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 176  ccaaatccaccttgtgacccagc 198
            |||||||||||||||||||||||
Sbjct: 1510 ccaaatccaccttgtgacccagc 1488
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>emb|Y10813.1|HVPRPB H.vulgare mRNA for pathogenic related protein in response to
           Blumeria
          Length = 546

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 47/55 (85%)
 Strand = Plus / Plus

                                                                  
Query: 65  tgcgtgatgctggcctcgatcgcgttcgccgcgcaggccgtgctcgccgccagag 119
           |||||||||||||||||| ||||||| || || |||| |||| | || |||||||
Sbjct: 60  tgcgtgatgctggcctcgctcgcgtttgctgcccagggcgtgtttgctgccagag 114
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 77      gcctcgatcgcgttcgccgcgc 98
               ||||||||||||||||||||||
Sbjct: 2191517 gcctcgatcgcgttcgccgcgc 2191496



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 92      gccgcgcaggccgtgctcgccgcc 115
               ||||||||||||| ||||||||||
Sbjct: 1597349 gccgcgcaggccgcgctcgccgcc 1597326
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>gb|CP000113.1| Myxococcus xanthus DK 1622, complete genome
          Length = 9139763

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 88      gttcgccgcgcaggccgtgct 108
               |||||||||||||||||||||
Sbjct: 7820314 gttcgccgcgcaggccgtgct 7820294



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     tcgcgttcgccgcgcaggcc 103
              ||||||||||||||||||||
Sbjct: 722050 tcgcgttcgccgcgcaggcc 722031
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>gb|AF353200.1|AF353200 Limia sp. La Zufrada tRNA-Met gene, partial sequence; NADH
          dehydrogenase subunit 2 (ND2) gene, complete cds; and
          tRNA-Trp gene, partial sequence; mitochondrial genes
          for mitochondrial products
          Length = 1105

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 atccttcctttagcaatggctcccc 41
          |||||||||||| ||||||||||||
Sbjct: 18 atccttcctttaccaatggctcccc 42
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>gb|AF353199.1|AF353199 Limia sp. La Zurza tRNA-Met gene, partial sequence; NADH
          dehydrogenase subunit 2 (ND2) gene, complete cds; and
          tRNA-Trp gene, partial sequence; mitochondrial genes
          for mitochondrial products
          Length = 1105

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 atccttcctttagcaatggctcccc 41
          |||||||||||| ||||||||||||
Sbjct: 18 atccttcctttaccaatggctcccc 42
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>gb|AF353198.1|AF353198 Limia sp. Las Salinas tRNA-Met gene, partial sequence; NADH
          dehydrogenase subunit 2 (ND2) gene, complete cds; and
          tRNA-Trp gene, partial sequence; mitochondrial genes
          for mitochondrial products
          Length = 1105

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 atccttcctttagcaatggctcccc 41
          |||||||||||| ||||||||||||
Sbjct: 18 atccttcctttaccaatggctcccc 42
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>gb|AF353197.1|AF353197 Limia melanonotata tRNA-Met gene, partial sequence; NADH
          dehydrogenase subunit 2 (ND2) gene, complete cds; and
          tRNA-Trp gene, partial sequence; mitochondrial genes
          for mitochondrial products
          Length = 1105

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 atccttcctttagcaatggctcccc 41
          |||||||||||| ||||||||||||
Sbjct: 18 atccttcctttaccaatggctcccc 42
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>emb|AL928933.7| Mouse DNA sequence from clone RP23-419H6 on chromosome X, complete
             sequence
          Length = 171812

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 304   ctgtttcccttttcgaataag 324
             |||||||||||||||||||||
Sbjct: 45300 ctgtttcccttttcgaataag 45280
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 88      gttcgccgcgcaggccgtgctcgcc 112
               ||||||||||||||||||| |||||
Sbjct: 3425634 gttcgccgcgcaggccgtgatcgcc 3425610



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 92      gccgcgcaggccgtgctcgccgcc 115
               |||||||||||||| |||||||||
Sbjct: 6855458 gccgcgcaggccgttctcgccgcc 6855481
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>gb|AF031399.1| Poecilia heterandria NADH dehydrogenase subunit 2 gene,
          mitochondrial gene encoding mitochondrial protein,
          complete cds
          Length = 1105

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 atccttcctttagcaatggctcccc 41
          |||||||||||| ||||||||||||
Sbjct: 18 atccttcctttaccaatggctcccc 42
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>gb|AF031392.1| Poecilia perugiae NADH dehydrogenase subunit 2 gene,
          mitochondrial gene encoding mitochondrial protein,
          complete cds
          Length = 1105

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 17 atccttcctttagcaatggctcccc 41
          |||||||||||| ||||||||||||
Sbjct: 18 atccttcctttaccaatggctcccc 42
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>gb|CP000440.1| Burkholderia cepacia AMMD chromosome 1, complete sequence
          Length = 3556545

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 67      cgtgatgctggcctcgatcgcgtt 90
               |||||||||||||||| |||||||
Sbjct: 2206601 cgtgatgctggcctcgctcgcgtt 2206624
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>ref|XM_499765.1| Yarrowia lipolytica CLIB122, YALI0A04873g predicted mRNA
          Length = 1353

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   gagcgaaaacacaagcatcc 20
           ||||||||||||||||||||
Sbjct: 948 gagcgaaaacacaagcatcc 967
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>gb|AC123946.4| Mus musculus BAC clone RP23-97L17 from chromosome 12, complete sequence
          Length = 193610

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 357    tgattatctgtaataaatcatatc 380
              |||||||||||||| |||||||||
Sbjct: 107621 tgattatctgtaatcaatcatatc 107598
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>gb|AC124366.4| Mus musculus BAC clone RP24-541E9 from chromosome 1, complete sequence
          Length = 166555

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 178    aaatccaccttgtgacccagctgt 201
              ||||||||| ||||||||||||||
Sbjct: 144729 aaatccaccatgtgacccagctgt 144706
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>gb|AC023912.5|ATAC023912 Arabidopsis thaliana chromosome III BAC F3E22 genomic sequence,
            complete sequence
          Length = 63767

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 229  acattagcttccgagaagct 248
            ||||||||||||||||||||
Sbjct: 6190 acattagcttccgagaagct 6209
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 93      ccgcgcaggccgtgctcgcc 112
               ||||||||||||||||||||
Sbjct: 2099577 ccgcgcaggccgtgctcgcc 2099596
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>gb|AC164615.3| Mus musculus BAC clone RP23-320N6 from chromosome 12, complete
            sequence
          Length = 201524

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 357  tgattatctgtaataaatcatatc 380
            |||||||||||||| |||||||||
Sbjct: 2823 tgattatctgtaatcaatcatatc 2800
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     gtgatgctggcctcgatcgc 87
              ||||||||||||||||||||
Sbjct: 353718 gtgatgctggcctcgatcgc 353699
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>gb|AF080488.1| Poecilia mexicana limantouri NADH dehydrogenase subunit 2 gene,
          mitochondrial gene encoding mitochondrial protein,
          complete cds
          Length = 1124

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 19 ccttcctttagcaatggctcccct 42
          |||||||||| |||||||||||||
Sbjct: 20 ccttcctttaccaatggctcccct 43
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>gb|AY007523.1| Pseudomonas fluorescens AlgH (algH), hypothetical protein, regulatory
            protein PyrR (pyrR), aspartate carbamoyl transferase PyrB
            (pyrB), and dihydro-orotase PyrC (pyrC) genes, complete
            cds; and unknown gene
          Length = 4080

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 209  tgttcgagcgggccacccgc 228
            ||||||||||||||||||||
Sbjct: 2271 tgttcgagcgggccacccgc 2252
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>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      gagcgaaaacacaagcatcc 20
              ||||||||||||||||||||
Sbjct: 509730 gagcgaaaacacaagcatcc 509711
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>emb|AL683800.9| Mouse DNA sequence from clone RP23-405B8 on chromosome X, complete
              sequence
          Length = 198175

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 358    gattatctgtaataaatcat 377
              ||||||||||||||||||||
Sbjct: 161683 gattatctgtaataaatcat 161702


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 57,005,329
Number of extensions: 2939841
Number of successful extensions: 215206
Number of sequences better than 10.0: 27
Number of HSP's gapped: 215206
Number of HSP's successfully gapped: 30
Length of query: 406
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 384
Effective length of database: 18,508,616,841
Effective search space: 7107308866944
Effective search space used: 7107308866944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 13 (26.3 bits)
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