ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | FLbaf160h17 |
|---|---|
| Clone Library Name | barley_pub |
>LOC_Os09g36040:12009.t03480:unspliced-genomic rhodanese-like domain containing protein, expressed| Length = 2919 Score = 93.2 bits (197), Expect(6) = 3e-89 Identities = 40/69 (57%), Positives = 46/69 (66%) Frame = +3 / +2 Query: 75 FALLYLMTTMITASSVVKANLPCXXXXXXXXXXXXGHSWRPLEAAKHYRTHGVRSLRITC 254 F +LMTTM+ ASSVV +NLPC G+SWRP+EAAK RT VRSL+ITC Sbjct: 119 FCSFFLMTTMLAASSVVNSNLPCSSRISSCSDFTSGYSWRPIEAAKLCRTRAVRSLQITC 298 Query: 255 AATKTAKSP 281 ATK AKSP Sbjct: 299 TATKPAKSP 325 Score = 89.0 bits (188), Expect(6) = 3e-89 Identities = 35/45 (77%), Positives = 37/45 (82%) Frame = +2 / +2 Query: 422 GSPTWCC*CTNIQINKGVDSMGYCKEGSICFLWHICRNRRES*VH 556 GS TWC *C NI I+KG+DSMGYCK GSIC LWHI NRRES*VH Sbjct: 1235 GSSTWCR*CANI*IDKGMDSMGYCKTGSICILWHIFWNRRES*VH 1369 Score = 81.7 bits (172), Expect(6) = 3e-89 Identities = 34/41 (82%), Positives = 36/41 (87%) Frame = +3 / +3 Query: 663 RSLIAAYLLVLNGYKNVFHLDGGLYTWFKADLPSEGEED*A 785 RSLIAAYLLVLNGYKNVFHLDGGLYTWFK LP+ E+*A Sbjct: 2412 RSLIAAYLLVLNGYKNVFHLDGGLYTWFKEGLPAVEGEE*A 2534 Score = 72.5 bits (152), Expect(6) = 3e-89 Identities = 28/36 (77%), Positives = 32/36 (88%) Frame = +3 / +3 Query: 558 KSVEEKLNKDSKIIVACSAGGTMKPTQNLPDGKQSR 665 + V+EKL KD+KIIVACS GGT+KPTQN PDGKQSR Sbjct: 1689 EGVDEKLGKDAKIIVACSTGGTLKPTQNFPDGKQSR 1796 Score = 62.5 bits (130), Expect(6) = 3e-89 Identities = 26/32 (81%), Positives = 29/32 (90%) Frame = +3 / +2 Query: 327 RVRSVDVKEALRLQNENNFVILDVRPEAEFKQ 422 +VRSVDVKEALRLQ ENNF ILDVRP A+FK+ Sbjct: 752 QVRSVDVKEALRLQKENNFAILDVRPVADFKE 847 Score = 39.1 bits (79), Expect(6) = 3e-89 Identities = 15/17 (88%), Positives = 17/17 (100%) Frame = +3 / +2 Query: 282 AEEEWKIKRQLLLEKRV 332 AEEEWKIKRQ+L+EKRV Sbjct: 425 AEEEWKIKRQVLVEKRV 475 Score = 104 bits (221), Expect(6) = 4e-82 Identities = 43/47 (91%), Positives = 44/47 (93%) Frame = -2 / -3 Query: 556 MNSGFSSVPANMPKKANAALLAISHAVHSFINLYICTLTAPGG*ACL 416 MNSGFSSVP NMPK ANAA LAISHAVHSFINLYICTLTAPGG*AC+ Sbjct: 1369 MNSGFSSVPENMPKNANAARLAISHAVHSFINLYICTLTAPGG*ACI 1229 Score = 100 bits (213), Expect(6) = 4e-82 Identities = 50/69 (72%), Positives = 51/69 (73%) Frame = -2 / -1 Query: 280 GDFAVLVAAHVIRSERTPCVR*CFAASNGRHE*PDEKSEQEDILDEQGRLAFTTELAVII 101 GDFA VA VI SERT VR FAAS GR E*PD KSEQEDILDEQGRL FTTELA I Sbjct: 324 GDFAGFVAVQVICSERTARVRQSFAASIGRQE*PDVKSEQEDILDEQGRLLFTTELAASI 145 Query: 100 VVMR*RRAK 74 VVMR + K Sbjct: 144 VVMRKKEQK 118 Score = 72.5 bits (152), Expect(6) = 4e-82 Identities = 31/41 (75%), Positives = 35/41 (85%) Frame = -2 / -3 Query: 784 AQSSSPSEGRSALNHV*SPPSRWNTFL*PFRTSRYAAIRDL 662 A SS + GR +LNHV*SPPSRWNTFL*PFRT++ AAIRDL Sbjct: 2533 AYSSPSTAGRPSLNHV*SPPSRWNTFL*PFRTNK*AAIRDL 2411 Score = 58.3 bits (121), Expect(6) = 4e-82 Identities = 22/39 (56%), Positives = 27/39 (69%) Frame = -1 / -2 Query: 665 P*LLPIR*ILCWLHCSSC*TCYNYL*IFIKFFFDAFYEL 549 P LLPIR +LCW CSSC TC+N L IF KF + F ++ Sbjct: 1796 PRLLPIRKVLCWFQCSSCRTCHNNLCIFTKFLINTFVKI 1680 Score = 54.7 bits (113), Expect(6) = 4e-82 Identities = 18/30 (60%), Positives = 26/30 (86%) Frame = -1 / -3 Query: 422 LFELCFWSDIKNYKVIFILKAECFLHIHTT 333 LF++ +W DIKN K++F+LK +CFLHI+TT Sbjct: 847 LFKVRYWPDIKNCKIVFLLKTQCFLHINTT 758 Score = 23.5 bits (45), Expect(6) = 4e-82 Identities = 9/10 (90%), Positives = 9/10 (90%) Frame = -2 / -1 Query: 310 CRLIFHSSSA 281 C LIFHSSSA Sbjct: 453 CLLIFHSSSA 424 Score = 84.0 bits (177), Expect(5) = 4e-61 Identities = 37/49 (75%), Positives = 40/49 (81%) Frame = -3 / -1 Query: 561 FL*TQDSLLFLQICQRKQMLPSLQYPMLSTPLLICIFVH*QHQVGEPV* 415 F+*TQDSLLF +ICQR QMLP LQYPMLS PL I IF H*+HQV EP * Sbjct: 1374 FV*TQDSLLFQKICQRMQMLPVLQYPMLSIPLSIYIFAH*RHQVDEPA* 1228 Score = 79.0 bits (166), Expect(5) = 4e-61 Identities = 38/67 (56%), Positives = 41/67 (61%) Frame = -1 / -3 Query: 284 SWRFRSLSGSTCYPQ*AHTMRPVMFCSF*WAPRMTR*EV*AGGYP*RARKVGFHYGASCD 105 +W L GST Y Q AH+ P FCS P + R EV*AGGYP* ARKV HY ASC Sbjct: 328 TW*LCRLCGSTGYLQRAHSSCPAEFCSLYRTPGVARCEV*AGGYP**ARKVAVHYRASCK 149 Query: 104 HRGHEIK 84 H GHE K Sbjct: 148 HCGHEKK 128 Score = 57.9 bits (120), Expect(5) = 4e-61 Identities = 21/24 (87%), Positives = 22/24 (91%) Frame = -2 / -3 Query: 664 LDCFPSGRFCVGFIVPPAEHATII 593 LDCFPSG+FCVGF VPP EHATII Sbjct: 1795 LDCFPSGKFCVGFNVPPVEHATII 1724 Score = 55.1 bits (114), Expect(5) = 4e-61 Identities = 22/34 (64%), Positives = 23/34 (67%) Frame = -3 / -1 Query: 765 QKAGLP*TMCRALHPDGTRSCSRLGPAGMPLSET 664 Q GLP*TMCR LHPDGT SC+ GP LS T Sbjct: 2514 QPVGLP*TMCRVLHPDGTHSCNHSGPTSKLLSGT 2413 Score = 47.3 bits (97), Expect(5) = 4e-61 Identities = 21/33 (63%), Positives = 24/33 (72%) Frame = -3 / -2 Query: 423 PV*TLLLV*HQELQSYFHFEGGVLPSHPHYVPA 325 P+*+ LL *HQELQ+ F E VLPSH HY PA Sbjct: 848 PL*SPLLA*HQELQNCFPSEDAVLPSHQHYGPA 750 Score = 78.5 bits (165), Expect(6) = 1e-54 Identities = 32/49 (65%), Positives = 34/49 (69%) Frame = +3 / +3 Query: 420 QAHPPGAVNVQIYRLIKEWTAWDXXXXXXXXXXXXXXXTEENPEFIKSV 566 QAHPPGAVNVQIYRLIKEWTAWD TEENPEFI+S+ Sbjct: 1233 QAHPPGAVNVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFIQSM 1379 Score = 72.5 bits (152), Expect(6) = 1e-54 Identities = 35/59 (59%), Positives = 40/59 (67%) Frame = +1 / +3 Query: 109 QLAP**KPTFLARQGYPPAQTSHLVIRGAH*KLQNITGRMVCAHCG*HVLPLRLRNLQL 285 QLA ** TFLA QGYPPAQTSHL G *+LQN G +CA C * VLP L++ Q+ Sbjct: 153 QLAL**TATFLAHQGYPPAQTSHLATPGVL*RLQNSAGHELCARCR*PVLPQSLQSHQV 329 Score = 57.4 bits (119), Expect(6) = 1e-54 Identities = 25/41 (60%), Positives = 29/41 (70%) Frame = +2 / +2 Query: 662 KVSDSGIPAGPKRLQERVPSGWRALHMVQGRPAF*RRGRLS 784 +V DS + GP+ LQE VPSGWR LHMVQGRP R R+S Sbjct: 2411 QVPDSSLLVGPEWLQECVPSGWRTLHMVQGRPTGC*RRRIS 2533 Score = 42.8 bits (87), Expect(6) = 1e-54 Identities = 17/25 (68%), Positives = 19/25 (76%) Frame = +2 / +2 Query: 593 DNCSMFSRRNNEANTEST*WEAIKV 667 D C MF RRN E NTE +*WEAI+V Sbjct: 1724 DYCGMFDRRNIETNTELS*WEAIEV 1798 Score = 40.5 bits (82), Expect(6) = 1e-54 Identities = 19/34 (55%), Positives = 22/34 (64%) Frame = +2 / +1 Query: 326 AGT*CGCEGSTPPSK*K*LCNS*CQTRSRVQTGS 427 AG *C CEGST S+ K CNS*CQ S + G+ Sbjct: 751 AGP*C*CEGSTASSEGKQFCNS*CQASSGL*RGN 852 Score = 28.6 bits (56), Expect(6) = 1e-54 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +1 / +3 Query: 277 LQLKKNGRSNGNSY*RSG 330 +QLKKNGRS G *+SG Sbjct: 420 IQLKKNGRSRGKC**KSG 473 Score = 60.2 bits (125), Expect(7) = 3e-34 Identities = 24/53 (45%), Positives = 29/53 (54%) Frame = +2 / +1 Query: 122 SESQPSXXXXXXXXXXXXIWSFVAPIRSCKTLPDAWCALTADNMCCH*DCEIS 280 SE QPS IW +A R CKTLPD CAL ADN+ CH C+++ Sbjct: 166 SEQQPSLLIKDILLLRLHIWLLLASYRGCKTLPDTSCALAADNLYCHKACKVT 324 Score = 57.0 bits (118), Expect(7) = 3e-34 Identities = 25/41 (60%), Positives = 29/41 (70%) Frame = +1 / +1 Query: 664 GL**RHTCWS*TATRTCSIWMEGSTHGSRQTCLLKERKIEQ 786 G **+ TCWS* TR CSIWME STHGSR+ L + K +Q Sbjct: 2413 GP**QLTCWS*MVTRMCSIWMEDSTHGSRKAYRLLKEKNKQ 2535 Score = 39.1 bits (79), Expect(7) = 3e-34 Identities = 17/37 (45%), Positives = 23/37 (62%) Frame = +1 / +1 Query: 559 KASKKNLIKIQR*L*HVXXXXXXXXHRIYLMGSNQGL 669 K +NL+K+QR L HV HR +LMGSN+G+ Sbjct: 1690 KVLMRNLVKMQRLLWHVRQEEH*NQHRTFLMGSNRGM 1800 Score = 31.8 bits (63), Expect(7) = 3e-34 Identities = 16/30 (53%), Positives = 19/30 (63%) Frame = +1 / +3 Query: 334 VVWM*RKHSAFKMKITL*FLMSDQKQSSNR 423 VV M*RKH F+ K L FLMS Q ++ R Sbjct: 759 VVLM*RKHCVFRRKTILQFLMSGQ*RTLKR 848 Score = 28.1 bits (55), Expect(7) = 3e-34 Identities = 13/19 (68%), Positives = 15/19 (78%) Frame = +2 / +1 Query: 275 ISS*RRMEDQTATPIREAG 331 I S*RRMEDQ A+ R+AG Sbjct: 418 IYS*RRMEDQEASASRKAG 474 Score = 26.7 bits (52), Expect(7) = 3e-34 Identities = 13/17 (76%), Positives = 13/17 (76%) Frame = +1 / +1 Query: 421 RLTHLVLLMYKYTD**R 471 RL HLV LM KY D**R Sbjct: 1234 RLIHLVPLMCKYID**R 1284 Score = 24.0 bits (46), Expect(7) = 3e-34 Identities = 11/14 (78%), Positives = 11/14 (78%) Frame = +1 / +1 Query: 520 AYLQEQKRILSS*K 561 AY EQKRILSS K Sbjct: 1333 AYFLEQKRILSSYK 1374 Score = 63.8 bits (133), Expect(4) = 1e-30 Identities = 28/50 (56%), Positives = 32/50 (64%) Frame = -1 / -2 Query: 569 FDAFYELRILFCSCKYAKESKXXXXXXXXXXPLLY*SVYLYINSTRWVSL 420 + YELRILFCS KYAKE K P LY S+YL+IN TRW+SL Sbjct: 1382 YHTLYELRILFCSRKYAKECKCCPSCNIPCCPFLYQSIYLHINGTRWMSL 1233 Score = 56.1 bits (116), Expect(4) = 1e-30 Identities = 28/43 (65%), Positives = 30/43 (69%) Frame = -3 / -2 Query: 261 WQHMLSAVSAHHASGNVLQLLMGATNDQMRSLSRRISLTSKEG 133 WQ+ LSA SA SG VLQ L A + QM SLSRRISL SKEG Sbjct: 305 WQYRLSAASAQLVSGRVLQPL*DARSSQM*SLSRRISLMSKEG 177 Score = 54.2 bits (112), Expect(4) = 1e-30 Identities = 24/42 (57%), Positives = 27/42 (64%) Frame = -1 / -2 Query: 788 SCSIFLSFRRQVCLEPCVEPSIQMEHVLVAV*DQQVCRYQRP 663 +C F R LEPCVE SIQMEH+LV + DQQV YQ P Sbjct: 2537 NCLFFSFNSR*AFLEPCVESSIQMEHILVTIQDQQVSCYQGP 2412 Score = 25.8 bits (50), Expect(4) = 1e-30 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = -2 / -1 Query: 418 LNSASGLTSRITKL 377 L SA+GLTSRI KL Sbjct: 843 LKSATGLTSRIAKL 802
>LOC_Os03g18020:12003.t01576:unspliced-genomic rhodanese-like family protein, putative, expressed| Length = 1012 Score = 33.1 bits (66), Expect(2) = 0.013 Identities = 16/50 (32%), Positives = 27/50 (54%) Frame = +3 / +1 Query: 309 QLLLEKRVRSVDVKEALRLQNENNFVILDVRPEAEFKQAHPPGAVNVQIY 458 +L+ VR+V +EA + F +LDVRPE E +A G+ + ++ Sbjct: 112 ELVRSGAVRAVRAREAAGAMSAEGFRLLDVRPEWERARAAVRGSAHAPLF 261 Score = 28.6 bits (56), Expect(2) = 0.013 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 / +3 Query: 663 RSLIAAYLLVLNGYKNVFHLDGG 731 RSLIA +L +GYKN+ L GG Sbjct: 735 RSLIAVRMLYDDGYKNLAWLAGG 803
>LOC_Os12g24020:12012.t02131:unspliced-genomic senescence-associated protein DIN1, putative, expressed| Length = 1679 Score = 39.1 bits (79), Expect = 0.047 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = +3 / +3 Query: 321 EKRVRSVDVKEALRLQNENNFVILDVRPEAEFKQAHPPGAVNVQIY 458 E+ +RSVD +EA L + LDVR +F + H GA NV Y Sbjct: 141 ERVMRSVDAEEACALLSSGRHQYLDVRMWEDFDKGHVAGARNVPYY 278
>LOC_Os02g38240:12002.t03462:unspliced-genomic rhodanese family protein, putative, expressed| Length = 2992 Score = 33.6 bits (67), Expect(2) = 0.38 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +3 / +1 Query: 552 FIKSVEEKLNKDSKIIVACSAG 617 F++ VEEK +KD+ IIV C G Sbjct: 1381 FVQQVEEKFSKDTDIIVVCQKG 1446 Score = 24.4 bits (47), Expect(2) = 0.38 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 / +2 Query: 663 RSLIAAYLLVLNGYKNVFHLDGGL 734 RSL A L G++N+F + GGL Sbjct: 1619 RSLAACEQLYGAGFQNLFWVQGGL 1690
>LOC_Os07g15080:12007.t01371:unspliced-genomic retrotransposon protein, putative, Ty3-gypsy subclass| Length = 5990 Score = 34.5 bits (69), Expect = 1.1 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 / +3 Query: 692 PKRLQERVPSGWRALHMVQGRPA 760 P+RL+E PSGW+ MV RPA Sbjct: 2289 PQRLKEATPSGWKPPVMVTNRPA 2357
>LOC_Os04g04330:12004.t00320:unspliced-genomic ATP binding protein, putative, expressed| Length = 4354 Score = 34.5 bits (69), Expect = 1.1 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +3 / +2 Query: 195 PLEAAKHYRTHGVRSLRITCAATKTAKSPAEEEWKIKRQ 311 P A R+ R R +C+AT T++ P+ W+ +R+ Sbjct: 1322 PSPAPSRRRSAASRRCRTSCSATTTSRGPSRRRWRTRRR 1438
>LOC_Os09g10750:12009.t00866:unspliced-genomic rhodanese family protein, putative, expressed| Length = 4188 Score = 33.1 bits (66), Expect = 2.9 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +3 / +1 Query: 330 VRSVDVKEALRLQNENNFVILDVRPEAEFKQAHPPGAVNVQIY 458 V VD EA RL E + +LD+R + ++AH + +V ++ Sbjct: 451 VSFVDGDEAKRLVAEEGYTVLDIRDRTQRERAHIKNSAHVPLF 579
>LOC_Os03g59430:12003.t05190:unspliced-genomic stachyose synthase precursor, putative, expressed| Length = 4699 Score = 32.2 bits (64), Expect = 5.5 Identities = 12/44 (27%), Positives = 20/44 (45%) Frame = +1 / +1 Query: 721 WMEGSTHGSRQTCLLKERKIEQESTCQLLVATPTPLSLFIQLQF 852 W S H CL + + + ++C + TP LF+ L+F Sbjct: 3406 WSSPSAHAHTPACLKQRQS*ARIASCDF*ILTPISSDLFVSLKF 3537
>LOC_Os02g34430:12002.t03082:unspliced-genomic BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor,| putative, expressed Length = 3202 Score = 32.2 bits (64), Expect = 5.5 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 / -3 Query: 522 CQRKQMLPSLQYPMLSTPLLICIFVH*Q 439 C MLP+L+Y ML T + CI +H Q Sbjct: 1130 CSIINMLPNLEYKMLVTVIRNCIIIHPQ 1047
>LOC_Os06g20410:12006.t01857:unspliced-genomic BAH domain containing protein, expressed| Length = 8789 Score = 31.8 bits (63), Expect = 7.5 Identities = 10/25 (40%), Positives = 14/25 (56%) Frame = -1 / -3 Query: 446 INSTRWVSLFELCFWSDIKNYKVIF 372 +N RW L W+DI+ YK+ F Sbjct: 1476 LNGMRWQGFVSLVAWNDIRRYKIKF 1402 Database: tigr.seq.out Posted date: Jul 20, 2007 8:58 AM Number of letters in database: 166,841,660 Number of sequences in database: 56,278 Lambda K H 0.318 0.134 0.401 Matrix: BLOSUM62 Number of Sequences: 56278 Number of Hits to DB: 345,264,561 Number of extensions: 5325767 Number of successful extensions: 18637 Number of sequences better than 10.0: 10 Length of query: 310 Length of database: 55,613,886 Length adjustment: 49 Effective length of query: 261 Effective length of database: 52,856,264 Effective search space: 13795484904 Effective search space used: 13795484904 Neighboring words threshold: 13 Window for multiple hits: 40 X1: 16 ( 7.3 bits)
