ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name FLbaf150m21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ242804.1|SST242804 Sporobolus stapfianus mRNA for putative... 54 8e-04
2gb|DQ244170.1| Zea mays clone 2745 mRNA sequence 50 0.013
3emb|CT832296.1| Oryza sativa (indica cultivar-group) cDNA clone:... 50 0.013
4emb|CT832295.1| Oryza sativa (indica cultivar-group) cDNA clone:... 50 0.013
5emb|CT832294.1| Oryza sativa (indica cultivar-group) cDNA clone:... 50 0.013
6ref|NM_001061018.1| Oryza sativa (japonica cultivar-group) Os05g... 50 0.013
7dbj|AK224736.1| Solanum lycopersicum cDNA, clone: FC11CH02, HTC ... 50 0.013
8gb|AY348312.1| Oryza sativa (indica cultivar-group) GPRP mRNA, c... 50 0.013
9dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.013
10dbj|AK099495.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.013
11dbj|AK071554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.013
12dbj|AK068289.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.013
13dbj|AK060883.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.013
14dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0... 50 0.013
15gb|AY109327.1| Zea mays CL468_1 mRNA sequence 44 0.78
16gb|AC188103.1| Pongo pygmaeus abelii chromosome UNK clone CH276-... 42 3.1
17ref|NM_123903.2| Arabidopsis thaliana rhodopsin-like receptor (A... 42 3.1
18gb|AC160977.2| Mus musculus BAC clone RP23-446C11 from chromosom... 42 3.1
19gb|AY052250.1| Arabidopsis thaliana AT5g45350/MFC19_1 mRNA, comp... 42 3.1
20emb|X84315.1|ATGPRP A.thaliana GPRP gene 42 3.1
21gb|AY086217.1| Arabidopsis thaliana clone 22538 mRNA, complete s... 42 3.1
22emb|AL355532.10| Human DNA sequence from clone RP11-487F5 on chr... 42 3.1
23dbj|AB018113.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 3.1
24dbj|AP006198.1| Homo sapiens genomic DNA, chromosome 6, clone:RP... 42 3.1
25gb|AC153979.3| Mus musculus 10 BAC RP24-502B23 (Roswell Park Can... 42 3.1
26gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 42 3.1
27dbj|AP002530.2| Homo sapiens genomic DNA, chromosome 6q21, anti-... 42 3.1
28dbj|AB042030.1| Homo sapiens genomic DNA, chromosome 6q21, BAC c... 42 3.1 
>emb|AJ242804.1|SST242804 Sporobolus stapfianus mRNA for putative glycine and proline-rich
           protein
          Length = 855
 Score = 54.0 bits (27), Expect = 8e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 241 ggggcgtatcctcctccacctggcgcataccctcc 275
           |||||||||||||| |||||||| |||||||||||
Sbjct: 236 ggggcgtatcctcccccacctggggcataccctcc 270



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 238 cctggggcgtatcctcctccacctggcgcataccctccgc 277
           |||||||| || |||||||||||||| |||||||| ||||
Sbjct: 254 cctggggcataccctcctccacctggggcatacccgccgc 293
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>gb|DQ244170.1| Zea mays clone 2745 mRNA sequence
          Length = 914

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                                
Query: 236 ctcctggggcgtatcctcctccacctggcgcataccc 272
           |||| ||||| ||||||||||||||||| ||||||||
Sbjct: 279 ctccaggggcatatcctcctccacctggggcataccc 315



 Score = 42.1 bits (21), Expect = 3.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 283 ggtggctacccgcctcacggtggctatcctccggtcggctaccctggct 331
           ||||||||||| ||||| ||||| |||||||| |  |||||||| ||||
Sbjct: 341 ggtggctacccacctcaaggtggatatcctcctgcaggctaccccggct 389
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>emb|CT832296.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN086C04, full
           insert sequence
          Length = 905

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 236 ctcctggggcgtatcctcctccacctggcgcataccctccgcagtatgg 284
           |||||||||| || ||||| |||||||| ||||||||||| ||| ||||
Sbjct: 262 ctcctggggcttaccctccaccacctggggcataccctccacagcatgg 310



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 355 ggtggacacatgggctatggaggc 378
           ||||||||||||||||||||||||
Sbjct: 513 ggtggacacatgggctatggaggc 536
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>emb|CT832295.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA102K18, full
           insert sequence
          Length = 985

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 236 ctcctggggcgtatcctcctccacctggcgcataccctccgcagtatgg 284
           |||||||||| || ||||| |||||||| ||||||||||| ||| ||||
Sbjct: 338 ctcctggggcttaccctccaccacctggggcataccctccacagcatgg 386



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 355 ggtggacacatgggctatggaggc 378
           ||||||||||||||||||||||||
Sbjct: 589 ggtggacacatgggctatggaggc 612
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>emb|CT832294.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI025N01, full
           insert sequence
          Length = 925

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 236 ctcctggggcgtatcctcctccacctggcgcataccctccgcagtatgg 284
           |||||||||| || ||||| |||||||| ||||||||||| ||| ||||
Sbjct: 278 ctcctggggcttaccctccaccacctggggcataccctccacagcatgg 326



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 355 ggtggacacatgggctatggaggc 378
           ||||||||||||||||||||||||
Sbjct: 529 ggtggacacatgggctatggaggc 552
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>ref|NM_001061018.1| Oryza sativa (japonica cultivar-group) Os05g0119300 (Os05g0119300)
           mRNA, complete cds
          Length = 926

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 236 ctcctggggcgtatcctcctccacctggcgcataccctccgcagtatgg 284
           |||||||||| || ||||| |||||||| ||||||||||| ||| ||||
Sbjct: 279 ctcctggggcttaccctccaccacctggggcataccctccacagcatgg 327



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 355 ggtggacacatgggctatggaggc 378
           ||||||||||||||||||||||||
Sbjct: 530 ggtggacacatgggctatggaggc 553
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>dbj|AK224736.1| Solanum lycopersicum cDNA, clone: FC11CH02, HTC in fruit
          Length = 660

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                            
Query: 183 aggatatggatatcctcctcaagggtacccgcc 215
           ||||||||||||||| || ||||||||||||||
Sbjct: 85  aggatatggatatccaccacaagggtacccgcc 117
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>gb|AY348312.1| Oryza sativa (indica cultivar-group) GPRP mRNA, complete cds
          Length = 640

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 236 ctcctggggcgtatcctcctccacctggcgcataccctccgcagtatgg 284
           |||||||||| || ||||| |||||||| ||||||||||| ||| ||||
Sbjct: 194 ctcctggggcttaccctccaccacctggggcataccctccacagcatgg 242



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 355 ggtggacacatgggctatggaggc 378
           ||||||||||||||||||||||||
Sbjct: 445 ggtggacacatgggctatggaggc 468
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5
          Length = 29737217

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                               
Query: 236    ctcctggggcgtatcctcctccacctggcgcataccctccgcagtatgg 284
              |||||||||| || ||||| |||||||| ||||||||||| ||| ||||
Sbjct: 941405 ctcctggggcttaccctccaccacctggggcataccctccacagcatgg 941357



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 355    ggtggacacatgggctatggaggc 378
              ||||||||||||||||||||||||
Sbjct: 940594 ggtggacacatgggctatggaggc 940571
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>dbj|AK099495.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027I01, full
           insert sequence
          Length = 928

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 236 ctcctggggcgtatcctcctccacctggcgcataccctccgcagtatgg 284
           |||||||||| || ||||| |||||||| ||||||||||| ||| ||||
Sbjct: 280 ctcctggggcttaccctccaccacctggggcataccctccacagcatgg 328



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 355 ggtggacacatgggctatggaggc 378
           ||||||||||||||||||||||||
Sbjct: 531 ggtggacacatgggctatggaggc 554
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>dbj|AK071554.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104E19, full
           insert sequence
          Length = 926

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 236 ctcctggggcgtatcctcctccacctggcgcataccctccgcagtatgg 284
           |||||||||| || ||||| |||||||| ||||||||||| ||| ||||
Sbjct: 279 ctcctggggcttaccctccaccacctggggcataccctccacagcatgg 327



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 355 ggtggacacatgggctatggaggc 378
           ||||||||||||||||||||||||
Sbjct: 530 ggtggacacatgggctatggaggc 553
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>dbj|AK068289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147E18, full
           insert sequence
          Length = 2163

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 236 ctcctggggcgtatcctcctccacctggcgcataccctccgcagtatgg 284
           |||||||||| || ||||| |||||||| ||||||||||| ||| ||||
Sbjct: 951 ctcctggggcttaccctccaccacctggggcataccctccacagcatgg 999



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 355  ggtggacacatgggctatggaggc 378
            ||||||||||||||||||||||||
Sbjct: 1762 ggtggacacatgggctatggaggc 1785
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>dbj|AK060883.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B01, full
           insert sequence
          Length = 1481

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 236 ctcctggggcgtatcctcctccacctggcgcataccctccgcagtatgg 284
           |||||||||| || ||||| |||||||| ||||||||||| ||| ||||
Sbjct: 278 ctcctggggcttaccctccaccacctggggcataccctccacagcatgg 326



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 355  ggtggacacatgggctatggaggc 378
            ||||||||||||||||||||||||
Sbjct: 1089 ggtggacacatgggctatggaggc 1112
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>dbj|AP001111.1| Oryza sativa genomic DNA, chromosome 5, clone:P0699E04
          Length = 175439

 Score = 50.1 bits (25), Expect = 0.013
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 236   ctcctggggcgtatcctcctccacctggcgcataccctccgcagtatgg 284
             |||||||||| || ||||| |||||||| ||||||||||| ||| ||||
Sbjct: 31802 ctcctggggcttaccctccaccacctggggcataccctccacagcatgg 31754



 Score = 48.1 bits (24), Expect = 0.050
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 355   ggtggacacatgggctatggaggc 378
             ||||||||||||||||||||||||
Sbjct: 30991 ggtggacacatgggctatggaggc 30968
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>gb|AY109327.1| Zea mays CL468_1 mRNA sequence
          Length = 2907

 Score = 44.1 bits (22), Expect = 0.78
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 558 cggcaagttcaagaagtgcaagtgat 583
           |||||||||||||||||| |||||||
Sbjct: 215 cggcaagttcaagaagtggaagtgat 190
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>gb|AC188103.1| Pongo pygmaeus abelii chromosome UNK clone CH276-49H12, complete
             sequence
          Length = 186139

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 561   caagttcaagaagtgcaagtg 581
             |||||||||||||||||||||
Sbjct: 25077 caagttcaagaagtgcaagtg 25057
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>ref|NM_123903.2| Arabidopsis thaliana rhodopsin-like receptor (AT5G45350) mRNA,
           complete cds
          Length = 862

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 559 ggcaagttcaagaagtgcaagtgat 583
           ||||||||||||||||| |||||||
Sbjct: 576 ggcaagttcaagaagtggaagtgat 600
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>gb|AC160977.2| Mus musculus BAC clone RP23-446C11 from chromosome 9, complete sequence
          Length = 168954

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 105   ggaaggagggaaggacaagaa 125
             |||||||||||||||||||||
Sbjct: 67678 ggaaggagggaaggacaagaa 67658
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>gb|AY052250.1| Arabidopsis thaliana AT5g45350/MFC19_1 mRNA, complete cds
          Length = 855

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 559 ggcaagttcaagaagtgcaagtgat 583
           ||||||||||||||||| |||||||
Sbjct: 569 ggcaagttcaagaagtggaagtgat 593
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>emb|X84315.1|ATGPRP A.thaliana GPRP gene
          Length = 2103

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 559  ggcaagttcaagaagtgcaagtgat 583
            ||||||||||||||||| |||||||
Sbjct: 1880 ggcaagttcaagaagtggaagtgat 1904
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>gb|AY086217.1| Arabidopsis thaliana clone 22538 mRNA, complete sequence
          Length = 787

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 559 ggcaagttcaagaagtgcaagtgat 583
           ||||||||||||||||| |||||||
Sbjct: 576 ggcaagttcaagaagtggaagtgat 600
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>emb|AL355532.10| Human DNA sequence from clone RP11-487F5 on chromosome 6 Contains the
             3' part of the GRIK2 (glutamate receptor, ionotropic,
             kainate 2) gene, ESTs, STSs and GSSs, complete sequence
          Length = 181302

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 561   caagttcaagaagtgcaagtg 581
             |||||||||||||||||||||
Sbjct: 17365 caagttcaagaagtgcaagtg 17345
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>dbj|AB018113.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFC19
          Length = 85020

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 559  ggcaagttcaagaagtgcaagtgat 583
            ||||||||||||||||| |||||||
Sbjct: 1529 ggcaagttcaagaagtggaagtgat 1505
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>dbj|AP006198.1| Homo sapiens genomic DNA, chromosome 6, clone:RP11-410D4, complete
             sequence
          Length = 139671

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 561   caagttcaagaagtgcaagtg 581
             |||||||||||||||||||||
Sbjct: 54320 caagttcaagaagtgcaagtg 54300
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>gb|AC153979.3| Mus musculus 10 BAC RP24-502B23 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 173683

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 99    aacaatggaaggagggaagga 119
             |||||||||||||||||||||
Sbjct: 62503 aacaatggaaggagggaagga 62483
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 723     tacataatttggtgttgtagc 743
               |||||||||||||||||||||
Sbjct: 2473247 tacataatttggtgttgtagc 2473227
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>dbj|AP002530.2| Homo sapiens genomic DNA, chromosome 6q21, anti-oncogene region, section
              3/4
          Length = 300000

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 561    caagttcaagaagtgcaagtg 581
              |||||||||||||||||||||
Sbjct: 139614 caagttcaagaagtgcaagtg 139594
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>dbj|AB042030.1| Homo sapiens genomic DNA, chromosome 6q21, BAC clone:610J6, complete
             sequence
          Length = 111927

 Score = 42.1 bits (21), Expect = 3.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 561   caagttcaagaagtgcaagtg 581
             |||||||||||||||||||||
Sbjct: 74638 caagttcaagaagtgcaagtg 74618


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS,
  GSS,environmental samples or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Dec 3, 2006  5:45 PM
  Number of letters in database: 18,610,659,111
  Number of sequences in database:  4,638,285
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 4638285
Number of Hits to DB: 115,266,061
Number of extensions: 6448763
Number of successful extensions: 187528
Number of sequences better than 10.0: 28
Number of HSP's gapped: 187528
Number of HSP's successfully gapped: 41
Length of query: 819
Length of database: 18,610,659,111
Length adjustment: 22
Effective length of query: 797
Effective length of database: 18,508,616,841
Effective search space: 14751367622277
Effective search space used: 14751367622277
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 25 (49.6 bits)
S1: 14 (28.2 bits)
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