| Clone Name | FLbaf147p18 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001054756.1| Oryza sativa (japonica cultivar-group) Os02g0765800 (Os02g0765800) mRNA, complete cds Length = 369 Score = 301 bits (152), Expect = 2e-78 Identities = 305/356 (85%) Strand = Plus / Plus Query: 115 atggaggggagcaagctcaaggcggccaggctcctggagcagatgagcgcccacctcgcc 174 ||||| |||||||| |||||| |||| ||| ||||||||| || ||| |||||||||| Sbjct: 1 atggaagggagcaacctcaagtcggctgcgctactggagcagttgcgcgtccacctcgcc 60 Query: 175 accgacgccggcaaggaggtcgccaacaaggtcggcttcgtctaccagctcaacatctcg 234 ||| ||||||||||||| ||| | | ||| |||||||||| ||||||||||||||||| Sbjct: 61 tccggcgccggcaaggagctcgtcgaaaagatcggcttcgtttaccagctcaacatctct 120 Query: 235 cccaagaagatgggcgtggacgaggagatcttcgtcgtggacctcaagaagggcgccgtc 294 ||||||||| | | | ||||||||| | |||||||| || ||||||||||||| |||| Sbjct: 121 cccaagaagctcgctttcgacgaggaggtattcgtcgtcgatctcaagaagggcgtcgtc 180 Query: 295 tccacagggaagtacgagggcacgccggacgcgagcttcaccttcaccgacgacgacttc 354 |||| |||| |||||| || | ||| ||||||| |||| ||||||| |||||||| ||| Sbjct: 181 tccaaagggccgtacgaagggaagccagacgcgaccttctccttcacggacgacgatttc 240 Query: 355 ctcgccatcgccagcggcaagctgaacccgcagatggcgtttatacggggtaagctgaag 414 || |||||| ||||||||||||||||||| ||||||||||| ||| |||||| ||||| Sbjct: 241 ctggccatctccagcggcaagctgaaccctcagatggcgttcataatgggtaaattgaag 300 Query: 415 atcaaggggagcatcagcgcggcgcagaagttcacgccggacatcttccccaagcc 470 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 atcaaggggagtataagcgcggcgcagaagttcacgccggacatcttccccaagcc 356
>gb|DQ244843.1| Zea mays clone 11107 mRNA sequence Length = 770 Score = 214 bits (108), Expect = 3e-52 Identities = 285/344 (82%) Strand = Plus / Plus Query: 144 gctcctggagcagatgagcgcccacctcgccaccgacgccggcaaggaggtcgccaacaa 203 ||||||||||| |||| || ||||| |||||||| ||||||||||||||| | || || Sbjct: 146 gctcctggagctgatgcgccagcacctggccaccgatgccggcaaggaggtcactaagaa 205 Query: 204 ggtcggcttcgtctaccagctcaacatctcgcccaagaagatgggcgtggacgaggagat 263 ||||||| |||||||||||||||||||| | ||||||||||| ||||| || |||||||| Sbjct: 206 ggtcggcctcgtctaccagctcaacatcgcccccaagaagatcggcgttgatgaggagat 265 Query: 264 cttcgtcgtggacctcaagaagggcgccgtctccacagggaagtacgagggcacgccgga 323 |||||| || |||||||||||||||| ||| ||| |||| |||| |||| | |||||| Sbjct: 266 cttcgtggtcgacctcaagaagggcgaggtcaccaaagggccgtaccagggaaagccgga 325 Query: 324 cgcgagcttcaccttcaccgacgacgacttcctcgccatcgccagcggcaagctgaaccc 383 || | ||| ||||||| ||| |||| ||||| | ||||||| ||||||| ||| || Sbjct: 326 tgccactttctccttcacggacaacgatttccttggaatcgccaccggcaagacgaatcc 385 Query: 384 gcagatggcgtttatacggggtaagctgaagatcaaggggagcatcagcgcggcgcagaa 443 |||||| || || || || || | | || ||||||||||||||||| ||||||||||| Sbjct: 386 gcagattgcattcattcgaggggcgattaaaatcaaggggagcatcagtgcggcgcagaa 445 Query: 444 gttcacgccggacatcttccccaagccggccaagttgtagaagg 487 |||||| || ||||||||||||||||| || ||| ||||||||| Sbjct: 446 gttcacccctgacatcttccccaagcctgctaagctgtagaagg 489
>ref|NM_001063654.1| Oryza sativa (japonica cultivar-group) Os06g0211300 (Os06g0211300) mRNA, complete cds Length = 1199 Score = 214 bits (108), Expect = 3e-52 Identities = 285/344 (82%) Strand = Plus / Plus Query: 144 gctcctggagcagatgagcgcccacctcgccaccgacgccggcaaggaggtcgccaacaa 203 |||||| ||||||||| || |||| | |||||||||||||||||||| ||||||| || Sbjct: 135 gctcctcgagcagatgcgcctccacatggccaccgacgccggcaaggacatcgccaagaa 194 Query: 204 ggtcggcttcgtctaccagctcaacatctcgcccaagaagatgggcgtggacgaggagat 263 ||||||| ||||||||||| |||||||| | |||||||| || || || ||||||||||| Sbjct: 195 ggtcggcctcgtctaccagttcaacatcgcccccaagaaaatcggagtcgacgaggagat 254 Query: 264 cttcgtcgtggacctcaagaagggcgccgtctccacagggaagtacgagggcacgccgga 323 ||||||||| |||||||||||||||| ||| ||| |||| ||||||||| | ||| || Sbjct: 255 cttcgtcgtcgacctcaagaagggcgaggtcaccaaagggccgtacgaggggaagccaga 314 Query: 324 cgcgagcttcaccttcaccgacgacgacttcctcgccatcgccagcggcaagctgaaccc 383 |||| |||| ||||||| || || |||||| | ||||||| || ||| ||||||| Sbjct: 315 tgcgaccttctccttcacggattctgatttcctctcgatcgccacggggaagatgaaccc 374 Query: 384 gcagatggcgtttatacggggtaagctgaagatcaaggggagcatcagcgcggcgcagaa 443 ||||| ||||| || || || | | ||||||||||||||||| |||||||||||||| Sbjct: 375 acagatcgcgttcattcgaggcgcgataaagatcaaggggagcataagcgcggcgcagaa 434 Query: 444 gttcacgccggacatcttccccaagccggccaagttgtagaagg 487 |||||| ||||| |||||||||||||| |||| ||||||||| Sbjct: 435 gttcaccccggatatcttccccaagccttccaaactgtagaagg 478
>emb|CT833456.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA044E16, full insert sequence Length = 723 Score = 206 bits (104), Expect = 8e-50 Identities = 284/344 (82%) Strand = Plus / Plus Query: 144 gctcctggagcagatgagcgcccacctcgccaccgacgccggcaaggaggtcgccaacaa 203 |||||| ||||||||| || |||| | |||||||||||||||||||| || |||| || Sbjct: 144 gctcctcgagcagatgcgcctccacatggccaccgacgccggcaaggacatcaccaagaa 203 Query: 204 ggtcggcttcgtctaccagctcaacatctcgcccaagaagatgggcgtggacgaggagat 263 ||||||| ||||||||||| |||||||||| |||||||| || || || ||||||||||| Sbjct: 204 ggtcggcctcgtctaccagttcaacatctcccccaagaaaatcggagtcgacgaggagat 263 Query: 264 cttcgtcgtggacctcaagaagggcgccgtctccacagggaagtacgagggcacgccgga 323 ||||||||| |||||||||||||||| ||| ||| |||| ||||||||| | ||| || Sbjct: 264 cttcgtcgtcgacctcaagaagggcgaggtcaccaaagggccgtacgaggggaagccaga 323 Query: 324 cgcgagcttcaccttcaccgacgacgacttcctcgccatcgccagcggcaagctgaaccc 383 |||| |||| ||||||| || || |||||| | ||||||| || ||| ||||||| Sbjct: 324 tgcgaccttctccttcacggattctgatttcctctcgatcgccactgggaagatgaaccc 383 Query: 384 gcagatggcgtttatacggggtaagctgaagatcaaggggagcatcagcgcggcgcagaa 443 ||||| ||||| || || || | ||||||||||||||||| |||||||||||||| Sbjct: 384 acagatcgcgttcattcgaggcgcaataaagatcaaggggagcataagcgcggcgcagaa 443 Query: 444 gttcacgccggacatcttccccaagccggccaagttgtagaagg 487 |||||| ||||| |||||||||||||| |||| ||||||||| Sbjct: 444 gttcaccccggatatcttccccaagccttccaaactgtagaagg 487
>dbj|AK060015.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F07, full insert sequence Length = 1199 Score = 206 bits (104), Expect = 8e-50 Identities = 284/344 (82%) Strand = Plus / Plus Query: 144 gctcctggagcagatgagcgcccacctcgccaccgacgccggcaaggaggtcgccaacaa 203 |||||| ||||||||| || |||| | |||||||||||||||||||| ||||||| || Sbjct: 135 gctcctcgagcagatgcgcctccacatggccaccgacgccggcaaggacatcgccaagaa 194 Query: 204 ggtcggcttcgtctaccagctcaacatctcgcccaagaagatgggcgtggacgaggagat 263 ||||||| |||||||| || |||||||| | |||||||| || || || ||||||||||| Sbjct: 195 ggtcggcctcgtctactagttcaacatcgcccccaagaaaatcggagtcgacgaggagat 254 Query: 264 cttcgtcgtggacctcaagaagggcgccgtctccacagggaagtacgagggcacgccgga 323 ||||||||| |||||||||||||||| ||| ||| |||| ||||||||| | ||| || Sbjct: 255 cttcgtcgtcgacctcaagaagggcgaggtcaccaaagggccgtacgaggggaagccaga 314 Query: 324 cgcgagcttcaccttcaccgacgacgacttcctcgccatcgccagcggcaagctgaaccc 383 |||| |||| ||||||| || || |||||| | ||||||| || ||| ||||||| Sbjct: 315 tgcgaccttctccttcacggattctgatttcctctcgatcgccacggggaagatgaaccc 374 Query: 384 gcagatggcgtttatacggggtaagctgaagatcaaggggagcatcagcgcggcgcagaa 443 ||||| ||||| || || || | | ||||||||||||||||| |||||||||||||| Sbjct: 375 acagatcgcgttcattcgaggcgcgataaagatcaaggggagcataagcgcggcgcagaa 434 Query: 444 gttcacgccggacatcttccccaagccggccaagttgtagaagg 487 |||||| ||||| |||||||||||||| |||| ||||||||| Sbjct: 435 gttcaccccggatatcttccccaagccttccaaactgtagaagg 478
>emb|CT831873.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN008I12, full insert sequence Length = 601 Score = 182 bits (92), Expect = 1e-42 Identities = 277/338 (81%), Gaps = 3/338 (0%) Strand = Plus / Plus Query: 111 cgcgatggaggggagcaagctcaaggcggccaggctcctggagcagatgagcgcccacct 170 ||||||||| |||||||| |||||| |||| ||| ||||||||| || | |||||| Sbjct: 57 cgcgatggaagggagcaacctcaagtcggctgcgctactggagcagttgcatgtccacct 116 Query: 171 cgccaccgacgccggcaaggaggtcgccaacaaggtcggcttcgtctaccagctcaacat 230 ||| ||| ||||||||||||| ||| | | | | ||||||||||||| || |||||||| Sbjct: 117 cgcgtccggcgccggcaaggagctcgtcgaaatgatcggcttcgtctatcatctcaacat 176 Query: 231 ctcgcccaagaagatgggcgtggacgaggagatcttcgtcgtggac---ctcaagaaggg 287 ||| |||||||| | || | ||||||||| | |||||||| | | ||||||||||| Sbjct: 177 ctctcccaagaaactcggtttcgacgaggaggtattcgtcgtcgtcgatctcaagaaggg 236 Query: 288 cgccgtctccacagggaagtacgagggcacgccggacgcgagcttcaccttcaccgacga 347 || |||||||| |||| ||||||||| | ||| ||||||| |||| ||||||| ||||| Sbjct: 237 cgtcgtctccaaagggccgtacgaggggaagccagacgcgaccttctccttcacggacga 296 Query: 348 cgacttcctcgccatcgccagcggcaagctgaacccgcagatggcgtttatacggggtaa 407 ||| ||||| |||||| ||||||| ||||||||||| ||||||| ||| ||| ||| || Sbjct: 297 cgatttcctggccatctccagcggtaagctgaaccctcagatggtgttcataatgggcaa 356 Query: 408 gctgaagatcaaggggagcatcagcgcggcgcagaagt 445 |||||||||||||||| || |||||||||||||||| Sbjct: 357 attgaagatcaaggggagtataagcgcggcgcagaagt 394
>ref|NM_001049544.1| Oryza sativa (japonica cultivar-group) Os01g0357200 (Os01g0357200) mRNA, complete cds Length = 563 Score = 139 bits (70), Expect = 2e-29 Identities = 216/264 (81%), Gaps = 3/264 (1%) Strand = Plus / Plus Query: 111 cgcgatggaggggagcaagctcaaggcggccaggctcctggagcagatgagcgcccacct 170 ||||||||| |||||||| |||||| |||| ||| ||||||||| || | |||||| Sbjct: 59 cgcgatggaagggagcaacctcaagtcggctgcgctactggagcagttgcatgtccacct 118 Query: 171 cgccaccgacgccggcaaggaggtcgccaacaaggtcggcttcgtctaccagctcaacat 230 ||| ||| ||||||||||||| ||| | | | | ||||||||||||||||||||||||| Sbjct: 119 cgcgtccggcgccggcaaggagctcgtcgaaatgatcggcttcgtctaccagctcaacat 178 Query: 231 ctcgcccaagaagatgggcgtggacgaggagatcttc---gtcgtggacctcaagaaggg 287 ||| |||||||| | || | ||||||||| | ||| ||||| || ||||||||||| Sbjct: 179 ctctcccaagaaactcggtttcgacgaggaggtattcatcgtcgtcgatctcaagaaggg 238 Query: 288 cgccgtctccacagggaagtacgagggcacgccggacgcgagcttcaccttcaccgacga 347 || |||||||| |||| ||||||||| | ||| ||||||| |||| ||||||| ||||| Sbjct: 239 cgtcgtctccaaagggccgtacgaggggaagccagacgcgaccttctccttcacggacga 298 Query: 348 cgacttcctcgccatcgccagcgg 371 ||| ||||| |||||| ||||||| Sbjct: 299 cgatttcctggccatctccagcgg 322 Score = 83.8 bits (42), Expect = 8e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatc 459 |||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 330 tgaagatcaaggggagtataagcgcggcgcagaagttcacgccggacatc 379
>dbj|AK099419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013006N13, full insert sequence Length = 564 Score = 139 bits (70), Expect = 2e-29 Identities = 216/264 (81%), Gaps = 3/264 (1%) Strand = Plus / Plus Query: 111 cgcgatggaggggagcaagctcaaggcggccaggctcctggagcagatgagcgcccacct 170 ||||||||| |||||||| |||||| |||| ||| ||||||||| || | |||||| Sbjct: 60 cgcgatggaagggagcaacctcaagtcggctgcgctactggagcagttgcatgtccacct 119 Query: 171 cgccaccgacgccggcaaggaggtcgccaacaaggtcggcttcgtctaccagctcaacat 230 ||| ||| ||||||||||||| ||| | | | | ||||||||||||||||||||||||| Sbjct: 120 cgcgtccggcgccggcaaggagctcgtcgaaatgatcggcttcgtctaccagctcaacat 179 Query: 231 ctcgcccaagaagatgggcgtggacgaggagatcttc---gtcgtggacctcaagaaggg 287 ||| |||||||| | || | ||||||||| | ||| ||||| || ||||||||||| Sbjct: 180 ctctcccaagaaactcggtttcgacgaggaggtattcatcgtcgtcgatctcaagaaggg 239 Query: 288 cgccgtctccacagggaagtacgagggcacgccggacgcgagcttcaccttcaccgacga 347 || |||||||| |||| ||||||||| | ||| ||||||| |||| ||||||| ||||| Sbjct: 240 cgtcgtctccaaagggccgtacgaggggaagccagacgcgaccttctccttcacggacga 299 Query: 348 cgacttcctcgccatcgccagcgg 371 ||| ||||| |||||| ||||||| Sbjct: 300 cgatttcctggccatctccagcgg 323 Score = 83.8 bits (42), Expect = 8e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatc 459 |||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 331 tgaagatcaaggggagtataagcgcggcgcagaagttcacgccggacatc 380
>emb|CT834380.1| Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN017K10, full insert sequence Length = 581 Score = 115 bits (58), Expect = 2e-22 Identities = 213/264 (80%), Gaps = 3/264 (1%) Strand = Plus / Plus Query: 111 cgcgatggaggggagcaagctcaaggcggccaggctcctggagcagatgagcgcccacct 170 ||||||||| || ||||| |||||| |||| ||| ||||||||| || | |||||| Sbjct: 58 cgcgatggaaggtagcaacctcaagtcggctgcgctactggagcagttgcatgtccacct 117 Query: 171 cgccaccgacgccggcaaggaggtcgccaacaaggtcggcttcgtctaccagctcaacat 230 ||| ||| ||||||||||||| ||| | | | | ||||||||||||| || |||||||| Sbjct: 118 cgcgtccggcgccggcaaggagctcgtcgaaatgatcggcttcgtctatcatctcaacat 177 Query: 231 ctcgcccaagaagatgggcgtggacgaggagatcttcgtcgtggac---ctcaagaaggg 287 ||| |||||||| | || | ||||||||| | |||||||| | | ||||||||||| Sbjct: 178 ctctcccaagaaactcggtttcgacgaggaggtattcgtcgtcgtcgatctcaagaaggg 237 Query: 288 cgccgtctccacagggaagtacgagggcacgccggacgcgagcttcaccttcaccgacga 347 || |||||||| |||| ||||||||| | ||| ||||||| |||| ||||||| ||||| Sbjct: 238 cgtcgtctccaaagggccgtacgaggggaagccagacgcgaccttctccttcacggacga 297 Query: 348 cgacttcctcgccatcgccagcgg 371 ||| ||||| |||||| ||||||| Sbjct: 298 cgatttcctggccatctccagcgg 321 Score = 56.0 bits (28), Expect = 2e-04 Identities = 34/36 (94%) Strand = Plus / Plus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagt 445 |||||||||||||||| || |||||||||||||||| Sbjct: 329 tgaagatcaaggggagtataagcgcggcgcagaagt 364
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2 Length = 35954743 Score = 115 bits (58), Expect = 2e-22 Identities = 118/138 (85%) Strand = Plus / Minus Query: 103 tcgcgcgccgcgatggaggggagcaagctcaaggcggccaggctcctggagcagatgagc 162 ||||||| ||||||||| |||||||| |||||| |||| ||| ||||||||| || || Sbjct: 32272306 tcgcgcgacgcgatggaagggagcaacctcaagtcggctgcgctactggagcagttgcgc 32272247 Query: 163 gcccacctcgccaccgacgccggcaaggaggtcgccaacaaggtcggcttcgtctaccag 222 | |||||||||| ||| ||||||||||||| ||| | | ||| |||||||||| |||||| Sbjct: 32272246 gtccacctcgcctccggcgccggcaaggagctcgtcgaaaagatcggcttcgtttaccag 32272187 Query: 223 ctcaacatctcgcccaag 240 ||||||||||| |||||| Sbjct: 32272186 ctcaacatctctcccaag 32272169 Score = 107 bits (54), Expect = 5e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 401 ggggtaagctgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatct 460 ||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 32271713 ggggtaaattgaagatcaaggggagtataagcgcggcgcagaagttcacgccggacatct 32271654 Query: 461 tccccaagcc 470 |||||||||| Sbjct: 32271653 tccccaagcc 32271644 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 322 gacgcgagcttcaccttcaccgacgacgacttcctcgccatcgccagcggcaagctgaac 381 ||||||| |||| ||||||| |||||||| ||||| |||||| ||||||||||||||||| Sbjct: 32271902 gacgcgaccttctccttcacggacgacgatttcctggccatctccagcggcaagctgaac 32271843 Query: 382 ccgcagatggcgtt 395 || ||||||||||| Sbjct: 32271842 cctcagatggcgtt 32271829 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 253 gacgaggagatcttcgtcgtggacctcaagaagggcgccgtctcca 298 ||||||||| | |||||||| || ||||||||||||| |||||||| Sbjct: 32272060 gacgaggaggtattcgtcgtcgatctcaagaagggcgtcgtctcca 32272015
>dbj|AP004817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0539D10 Length = 158691 Score = 115 bits (58), Expect = 2e-22 Identities = 118/138 (85%) Strand = Plus / Minus Query: 103 tcgcgcgccgcgatggaggggagcaagctcaaggcggccaggctcctggagcagatgagc 162 ||||||| ||||||||| |||||||| |||||| |||| ||| ||||||||| || || Sbjct: 116319 tcgcgcgacgcgatggaagggagcaacctcaagtcggctgcgctactggagcagttgcgc 116260 Query: 163 gcccacctcgccaccgacgccggcaaggaggtcgccaacaaggtcggcttcgtctaccag 222 | |||||||||| ||| ||||||||||||| ||| | | ||| |||||||||| |||||| Sbjct: 116259 gtccacctcgcctccggcgccggcaaggagctcgtcgaaaagatcggcttcgtttaccag 116200 Query: 223 ctcaacatctcgcccaag 240 ||||||||||| |||||| Sbjct: 116199 ctcaacatctctcccaag 116182 Score = 107 bits (54), Expect = 5e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 401 ggggtaagctgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatct 460 ||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 115726 ggggtaaattgaagatcaaggggagtataagcgcggcgcagaagttcacgccggacatct 115667 Query: 461 tccccaagcc 470 |||||||||| Sbjct: 115666 tccccaagcc 115657 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 322 gacgcgagcttcaccttcaccgacgacgacttcctcgccatcgccagcggcaagctgaac 381 ||||||| |||| ||||||| |||||||| ||||| |||||| ||||||||||||||||| Sbjct: 115915 gacgcgaccttctccttcacggacgacgatttcctggccatctccagcggcaagctgaac 115856 Query: 382 ccgcagatggcgtt 395 || ||||||||||| Sbjct: 115855 cctcagatggcgtt 115842 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 253 gacgaggagatcttcgtcgtggacctcaagaagggcgccgtctcca 298 ||||||||| | |||||||| || ||||||||||||| |||||||| Sbjct: 116073 gacgaggaggtattcgtcgtcgatctcaagaagggcgtcgtctcca 116028
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 115 bits (58), Expect = 2e-22 Identities = 118/138 (85%) Strand = Plus / Minus Query: 103 tcgcgcgccgcgatggaggggagcaagctcaaggcggccaggctcctggagcagatgagc 162 ||||||| ||||||||| |||||||| |||||| |||| ||| ||||||||| || || Sbjct: 48138 tcgcgcgacgcgatggaagggagcaacctcaagtcggctgcgctactggagcagttgcgc 48079 Query: 163 gcccacctcgccaccgacgccggcaaggaggtcgccaacaaggtcggcttcgtctaccag 222 | |||||||||| ||| ||||||||||||| ||| | | ||| |||||||||| |||||| Sbjct: 48078 gtccacctcgcctccggcgccggcaaggagctcgtcgaaaagatcggcttcgtttaccag 48019 Query: 223 ctcaacatctcgcccaag 240 ||||||||||| |||||| Sbjct: 48018 ctcaacatctctcccaag 48001 Score = 107 bits (54), Expect = 5e-20 Identities = 66/70 (94%) Strand = Plus / Minus Query: 401 ggggtaagctgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatct 460 ||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct: 47545 ggggtaaattgaagatcaaggggagtataagcgcggcgcagaagttcacgccggacatct 47486 Query: 461 tccccaagcc 470 |||||||||| Sbjct: 47485 tccccaagcc 47476 Score = 91.7 bits (46), Expect = 3e-15 Identities = 67/74 (90%) Strand = Plus / Minus Query: 322 gacgcgagcttcaccttcaccgacgacgacttcctcgccatcgccagcggcaagctgaac 381 ||||||| |||| ||||||| |||||||| ||||| |||||| ||||||||||||||||| Sbjct: 47734 gacgcgaccttctccttcacggacgacgatttcctggccatctccagcggcaagctgaac 47675 Query: 382 ccgcagatggcgtt 395 || ||||||||||| Sbjct: 47674 cctcagatggcgtt 47661 Score = 52.0 bits (26), Expect = 0.003 Identities = 41/46 (89%) Strand = Plus / Minus Query: 253 gacgaggagatcttcgtcgtggacctcaagaagggcgccgtctcca 298 ||||||||| | |||||||| || ||||||||||||| |||||||| Sbjct: 47892 gacgaggaggtattcgtcgtcgatctcaagaagggcgtcgtctcca 47847
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6 Length = 30731886 Score = 95.6 bits (48), Expect = 2e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 412 aagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatcttccccaagccg 471 ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 5700486 aagatcaaggggagcataagcgcggcgcagaagttcaccccggatatcttccccaagcct 5700545 Query: 472 gccaagttgtagaagg 487 |||| ||||||||| Sbjct: 5700546 tccaaactgtagaagg 5700561 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Plus Query: 144 gctcctggagcagatgagcgcccacctcgccaccgacgccggcaaggaggtcgccaacaa 203 |||||| ||||||||| || |||| | |||||||||||||||||||| ||||||| || Sbjct: 5699648 gctcctcgagcagatgcgcctccacatggccaccgacgccggcaaggacatcgccaagaa 5699707 Query: 204 ggtcggcttcgtctaccagctcaacatctcgcccaag 240 ||||||| ||||||||||| |||||||| | |||||| Sbjct: 5699708 ggtcggcctcgtctaccagttcaacatcgcccccaag 5699744 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 253 gacgaggagatcttcgtcgtggacctcaagaagggcg 289 |||||||||||||||||||| |||||||||||||||| Sbjct: 5699843 gacgaggagatcttcgtcgtcgacctcaagaagggcg 5699879
>dbj|AP003458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0701E03 Length = 183245 Score = 95.6 bits (48), Expect = 2e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 412 aagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatcttccccaagccg 471 ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 16015 aagatcaaggggagcataagcgcggcgcagaagttcaccccggatatcttccccaagcct 16074 Query: 472 gccaagttgtagaagg 487 |||| ||||||||| Sbjct: 16075 tccaaactgtagaagg 16090 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Plus Query: 144 gctcctggagcagatgagcgcccacctcgccaccgacgccggcaaggaggtcgccaacaa 203 |||||| ||||||||| || |||| | |||||||||||||||||||| ||||||| || Sbjct: 15177 gctcctcgagcagatgcgcctccacatggccaccgacgccggcaaggacatcgccaagaa 15236 Query: 204 ggtcggcttcgtctaccagctcaacatctcgcccaag 240 ||||||| ||||||||||| |||||||| | |||||| Sbjct: 15237 ggtcggcctcgtctaccagttcaacatcgcccccaag 15273 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 253 gacgaggagatcttcgtcgtggacctcaagaagggcg 289 |||||||||||||||||||| |||||||||||||||| Sbjct: 15372 gacgaggagatcttcgtcgtcgacctcaagaagggcg 15408
>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0021C04 Length = 162115 Score = 95.6 bits (48), Expect = 2e-16 Identities = 69/76 (90%) Strand = Plus / Plus Query: 412 aagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatcttccccaagccg 471 ||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||| Sbjct: 92633 aagatcaaggggagcataagcgcggcgcagaagttcaccccggatatcttccccaagcct 92692 Query: 472 gccaagttgtagaagg 487 |||| ||||||||| Sbjct: 92693 tccaaactgtagaagg 92708 Score = 89.7 bits (45), Expect = 1e-14 Identities = 84/97 (86%) Strand = Plus / Plus Query: 144 gctcctggagcagatgagcgcccacctcgccaccgacgccggcaaggaggtcgccaacaa 203 |||||| ||||||||| || |||| | |||||||||||||||||||| ||||||| || Sbjct: 91795 gctcctcgagcagatgcgcctccacatggccaccgacgccggcaaggacatcgccaagaa 91854 Query: 204 ggtcggcttcgtctaccagctcaacatctcgcccaag 240 ||||||| ||||||||||| |||||||| | |||||| Sbjct: 91855 ggtcggcctcgtctaccagttcaacatcgcccccaag 91891 Score = 65.9 bits (33), Expect = 2e-07 Identities = 36/37 (97%) Strand = Plus / Plus Query: 253 gacgaggagatcttcgtcgtggacctcaagaagggcg 289 |||||||||||||||||||| |||||||||||||||| Sbjct: 91990 gacgaggagatcttcgtcgtcgacctcaagaagggcg 92026
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1 Length = 43261740 Score = 83.8 bits (42), Expect = 8e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 111 cgcgatggaggggagcaagctcaaggcggccaggctcctggagcagatgagcgcccacct 170 ||||||||| |||||||| |||||| |||| ||| ||||||||| || | |||||| Sbjct: 14436627 cgcgatggaagggagcaacctcaagtcggctgcgctactggagcagttgcatgtccacct 14436686 Query: 171 cgccaccgacgccggcaaggaggtcgccaacaaggtcggcttcgtctaccagctcaacat 230 ||| ||| ||||||||||||| ||| | | | | ||||||||||||||||||||||||| Sbjct: 14436687 cgcgtccggcgccggcaaggagctcgtcgaaatgatcggcttcgtctaccagctcaacat 14436746 Query: 231 ctcgcccaag 240 ||| |||||| Sbjct: 14436747 ctctcccaag 14436756 Score = 83.8 bits (42), Expect = 8e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 306 gtacgagggcacgccggacgcgagcttcaccttcaccgacgacgacttcctcgccatcgc 365 ||||||||| | ||| ||||||| |||| ||||||| |||||||| ||||| |||||| | Sbjct: 14437005 gtacgaggggaagccagacgcgaccttctccttcacggacgacgatttcctggccatctc 14437064 Query: 366 cagcggcaagctgaacccgcagatgg 391 |||||| ||||||||||| ||||||| Sbjct: 14437065 cagcggtaagctgaaccctcagatgg 14437090 Score = 83.8 bits (42), Expect = 8e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatc 459 |||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 14437195 tgaagatcaaggggagtataagcgcggcgcagaagttcacgccggacatc 14437244 Score = 42.1 bits (21), Expect = 2.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 266 tcgtcgtggacctcaagaagggcgccgtctcca 298 ||||||| || ||||||||||||| |||||||| Sbjct: 14436894 tcgtcgtcgatctcaagaagggcgtcgtctcca 14436926
>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025H06 Length = 151547 Score = 83.8 bits (42), Expect = 8e-13 Identities = 108/130 (83%) Strand = Plus / Plus Query: 111 cgcgatggaggggagcaagctcaaggcggccaggctcctggagcagatgagcgcccacct 170 ||||||||| |||||||| |||||| |||| ||| ||||||||| || | |||||| Sbjct: 98024 cgcgatggaagggagcaacctcaagtcggctgcgctactggagcagttgcatgtccacct 98083 Query: 171 cgccaccgacgccggcaaggaggtcgccaacaaggtcggcttcgtctaccagctcaacat 230 ||| ||| ||||||||||||| ||| | | | | ||||||||||||||||||||||||| Sbjct: 98084 cgcgtccggcgccggcaaggagctcgtcgaaatgatcggcttcgtctaccagctcaacat 98143 Query: 231 ctcgcccaag 240 ||| |||||| Sbjct: 98144 ctctcccaag 98153 Score = 83.8 bits (42), Expect = 8e-13 Identities = 75/86 (87%) Strand = Plus / Plus Query: 306 gtacgagggcacgccggacgcgagcttcaccttcaccgacgacgacttcctcgccatcgc 365 ||||||||| | ||| ||||||| |||| ||||||| |||||||| ||||| |||||| | Sbjct: 98402 gtacgaggggaagccagacgcgaccttctccttcacggacgacgatttcctggccatctc 98461 Query: 366 cagcggcaagctgaacccgcagatgg 391 |||||| ||||||||||| ||||||| Sbjct: 98462 cagcggtaagctgaaccctcagatgg 98487 Score = 83.8 bits (42), Expect = 8e-13 Identities = 48/50 (96%) Strand = Plus / Plus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatc 459 |||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct: 98592 tgaagatcaaggggagtataagcgcggcgcagaagttcacgccggacatc 98641 Score = 42.1 bits (21), Expect = 2.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 266 tcgtcgtggacctcaagaagggcgccgtctcca 298 ||||||| || ||||||||||||| |||||||| Sbjct: 98291 tcgtcgtcgatctcaagaagggcgtcgtctcca 98323
>gb|AY618149.1| Sterkiella histriomuscorum clone UGC1O0006_I22_F genomic sequence Length = 558 Score = 50.1 bits (25), Expect = 0.011 Identities = 46/53 (86%) Strand = Plus / Minus Query: 370 ggcaagctgaacccgcagatggcgtttatacggggtaagctgaagatcaaggg 422 |||||||| ||||| |||||||| ||||| | ||| ||| ||||||||||||| Sbjct: 299 ggcaagctcaacccacagatggcatttatgcagggaaagatgaagatcaaggg 247
>gb|AC011299.3| Homo sapiens BAC clone RP11-232C20 from 7, complete sequence Length = 147712 Score = 48.1 bits (24), Expect = 0.043 Identities = 27/28 (96%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgccctg 520 ||||| |||||||||||||||||||||| Sbjct: 39597 ttgccttgccttgccttgccctgccctg 39570
>emb|AL359915.14| Human DNA sequence from clone RP11-418J17 on chromosome 1 Contains the 3' end of a novel gene, a ribosomal protein L6 (RPL6) pseudogene and the 5' end of a novel gene, complete sequence Length = 159158 Score = 48.1 bits (24), Expect = 0.043 Identities = 27/28 (96%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgccctg 520 ||||| |||||||||||||||||||||| Sbjct: 99108 ttgccttgccttgccttgccctgccctg 99135
>emb|AL158156.7| Human DNA sequence from clone RP11-405L18 on chromosome 9 Contains the 5' end of a novel gene ( KIAA0354), a novel pseudogene, the gene for RNA polymerase I associated factor 53 (FLJ13390, FLJ13970)(PAF53), a novel gene, a ribosomal protein L21 (RPL21) pseudogene and a CpG island, complete sequence Length = 42353 Score = 48.1 bits (24), Expect = 0.043 Identities = 27/28 (96%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgccctg 520 ||||| |||||||||||||||||||||| Sbjct: 4819 ttgccttgccttgccttgccctgccctg 4792
>emb|BX294091.1|NCB14A21 Neurospora crassa DNA linkage group V BAC contig B14A21 Length = 113206 Score = 48.1 bits (24), Expect = 0.043 Identities = 30/32 (93%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgccctggtga 524 ||||| |||||||||||||| ||||||||||| Sbjct: 91223 ttgccttgccttgccttgccttgccctggtga 91192
>gb|AC093802.3| Homo sapiens BAC clone RP11-315F22 from 2, complete sequence Length = 165535 Score = 48.1 bits (24), Expect = 0.043 Identities = 27/28 (96%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgccctg 520 ||||| |||||||||||||||||||||| Sbjct: 9952 ttgccttgccttgccttgccctgccctg 9979 Score = 48.1 bits (24), Expect = 0.043 Identities = 27/28 (96%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgccctg 520 ||||| |||||||||||||||||||||| Sbjct: 10052 ttgccctgccttgccttgccctgccctg 10079 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgccctgg 521 ||||| ||||||||| ||||||||||||| Sbjct: 10847 ttgccctgccttgccctgccctgccctgg 10875
>gb|AC100956.9| Mus musculus chromosome 7, clone RP23-74B10, complete sequence Length = 245367 Score = 48.1 bits (24), Expect = 0.043 Identities = 27/28 (96%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgccctg 520 ||||| |||||||||||||||||||||| Sbjct: 110561 ttgccttgccttgccttgccctgccctg 110588
>gb|AC127263.4| Mus musculus BAC clone RP24-328P2 from 6, complete sequence Length = 149105 Score = 48.1 bits (24), Expect = 0.043 Identities = 27/28 (96%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgccctg 520 ||||| |||||||||||||||||||||| Sbjct: 72335 ttgccttgccttgccttgccctgccctg 72362
>gb|AC004609.1|AC004609 Homo sapiens chromosome 19, cosmid F16912, complete sequence Length = 35822 Score = 48.1 bits (24), Expect = 0.043 Identities = 27/28 (96%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgccctg 520 ||||| |||||||||||||||||||||| Sbjct: 6509 ttgccttgccttgccttgccctgccctg 6482
>gb|AC166825.3| Mus musculus BAC clone RP23-368D12 from chromosome 6, complete sequence Length = 182232 Score = 48.1 bits (24), Expect = 0.043 Identities = 27/28 (96%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgccctg 520 ||||| |||||||||||||||||||||| Sbjct: 174775 ttgccttgccttgccttgccctgccctg 174748
>gb|CP000479.1| Mycobacterium avium 104, complete genome Length = 5475491 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 332 tcaccttcaccgacgacgacttc 354 ||||||||||||||||||||||| Sbjct: 1406303 tcaccttcaccgacgacgacttc 1406325
>emb|CT009587.1| Triticum turgidum Length = 229209 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 328 agcttcaccttcaccgacgacga 350 ||||||||||||||||||||||| Sbjct: 39811 agcttcaccttcaccgacgacga 39789
>ref|NM_123654.2| Arabidopsis thaliana sterol carrier (AT5G42890) mRNA, complete cds Length = 680 Score = 46.1 bits (23), Expect = 0.17 Identities = 47/55 (85%) Strand = Plus / Plus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatcttccc 464 ||||||||||||| || |||| || |||||||| ||||| || ||||||||||| Sbjct: 421 tgaagatcaagggtagtctcagtgctgcgcagaaattcacccctgacatcttccc 475
>gb|AC144613.1| Pan troglodytes BAC clone RP43-1F6 from 7, complete sequence Length = 177443 Score = 46.1 bits (23), Expect = 0.17 Identities = 26/27 (96%) Strand = Plus / Plus Query: 494 tgccatgccttgccttgccctgccctg 520 |||| |||||||||||||||||||||| Sbjct: 85931 tgccctgccttgccttgccctgccctg 85957 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 499 tgccttgccttgccctgccctg 520 |||||||||||||||||||||| Sbjct: 85916 tgccttgccttgccctgccctg 85937
>gb|AY117215.1| Arabidopsis thaliana unknown protein (At5g42890) mRNA, complete cds Length = 403 Score = 46.1 bits (23), Expect = 0.17 Identities = 47/55 (85%) Strand = Plus / Plus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatcttccc 464 ||||||||||||| || |||| || |||||||| ||||| || ||||||||||| Sbjct: 299 tgaagatcaagggtagtctcagtgctgcgcagaaattcacccctgacatcttccc 353
>gb|AY050909.1| Arabidopsis thaliana unknown protein (At5g42890) mRNA, complete cds Length = 586 Score = 46.1 bits (23), Expect = 0.17 Identities = 47/55 (85%) Strand = Plus / Plus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatcttccc 464 ||||||||||||| || |||| || |||||||| ||||| || ||||||||||| Sbjct: 312 tgaagatcaagggtagtctcagtgctgcgcagaaattcacccctgacatcttccc 366
>gb|AY087906.1| Arabidopsis thaliana clone 39514 mRNA, complete sequence Length = 676 Score = 46.1 bits (23), Expect = 0.17 Identities = 47/55 (85%) Strand = Plus / Plus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatcttccc 464 ||||||||||||| || |||| || |||||||| ||||| || ||||||||||| Sbjct: 421 tgaagatcaagggtagtctcagtgctgcgcagaaattcacccctgacatcttccc 475
>dbj|AB008264.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBD2 Length = 79976 Score = 46.1 bits (23), Expect = 0.17 Identities = 47/55 (85%) Strand = Plus / Minus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatcttccc 464 ||||||||||||| || |||| || |||||||| ||||| || ||||||||||| Sbjct: 23453 tgaagatcaagggtagtctcagtgctgcgcagaaattcacccctgacatcttccc 23399
>emb|BX833624.1|CNS0A0G7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL66ZG06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 564 Score = 46.1 bits (23), Expect = 0.17 Identities = 47/55 (85%) Strand = Plus / Plus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatcttccc 464 ||||||||||||| || |||| || |||||||| ||||| || ||||||||||| Sbjct: 305 tgaagatcaagggtagtctcagtgctgcgcagaaattcacccctgacatcttccc 359
>emb|BX833036.1|CNS0A0E2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL30ZG10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 594 Score = 46.1 bits (23), Expect = 0.17 Identities = 47/55 (85%) Strand = Plus / Plus Query: 410 tgaagatcaaggggagcatcagcgcggcgcagaagttcacgccggacatcttccc 464 ||||||||||||| || |||| || |||||||| ||||| || ||||||||||| Sbjct: 319 tgaagatcaagggtagtctcagtgctgcgcagaaattcacccctgacatcttccc 373
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 332 tcaccttcaccgacgacgacttc 354 ||||||||||||||||||||||| Sbjct: 2791132 tcaccttcaccgacgacgacttc 2791110
>dbj|AP005242.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-805F19, complete sequence Length = 196360 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 499 tgccttgccttgccctgccctgg 521 ||||||||||||||||||||||| Sbjct: 11659 tgccttgccttgccctgccctgg 11681
>dbj|AP005121.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-527H14, complete sequence Length = 155150 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 499 tgccttgccttgccctgccctgg 521 ||||||||||||||||||||||| Sbjct: 148127 tgccttgccttgccctgccctgg 148149
>gb|AC136220.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0075J06, complete sequence Length = 127053 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 354 cctcgccatcgccagcggcaag 375 |||||||||||||||||||||| Sbjct: 73538 cctcgccatcgccagcggcaag 73559
>ref|XM_590046.2| PREDICTED: Bos taurus similar to Zinc finger BED domain containing protein 2 (LOC539880), mRNA Length = 654 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 138 ggccaggctcctggagcagatg 159 |||||||||||||||||||||| Sbjct: 414 ggccaggctcctggagcagatg 435
>gb|AC124448.4| Mus musculus BAC clone RP24-211A8 from chromosome 18, complete sequence Length = 159308 Score = 44.1 bits (22), Expect = 0.67 Identities = 25/26 (96%) Strand = Plus / Plus Query: 54 atcccaaccccatctgctacgtccct 79 |||||||||||||||||||| ||||| Sbjct: 128923 atcccaaccccatctgctacctccct 128948
>gb|AC124431.4| Mus musculus BAC clone RP24-243J21 from chromosome 18, complete sequence Length = 143099 Score = 44.1 bits (22), Expect = 0.67 Identities = 25/26 (96%) Strand = Plus / Minus Query: 54 atcccaaccccatctgctacgtccct 79 |||||||||||||||||||| ||||| Sbjct: 124735 atcccaaccccatctgctacctccct 124710
>gb|AC084859.7| Homo sapiens chromosome 11, clone CTC-497E21, complete sequence Length = 172345 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 499 tgccttgccttgccctgccctg 520 |||||||||||||||||||||| Sbjct: 39655 tgccttgccttgccctgccctg 39634
>gb|AC114495.2| Homo sapiens chromosome 1 clone RP11-490K7, complete sequence Length = 174903 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 499 tgccttgccttgccctgccctg 520 |||||||||||||||||||||| Sbjct: 91640 tgccttgccttgccctgccctg 91661
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5 Length = 29737217 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 354 cctcgccatcgccagcggcaag 375 |||||||||||||||||||||| Sbjct: 9437808 cctcgccatcgccagcggcaag 9437829
>emb|AL031003.1|HS422G23 Human DNA sequence from clone RP3-422G23 on chromosome 6q24 Contains the gene for KIAA1244 protein, a macrophage myristoylated alanine-rich C kinase substrate (MACMARCKS) pseudogene, a pseudogene similar to Mus musculus upregulated during skeletal muscle growth 5 (Usmg5), the gene for chromosome 6 open reading frame 34 (C6orf34) (SOUL) and a CpG island, complete sequence Length = 159344 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 499 tgccttgccttgccctgccctg 520 |||||||||||||||||||||| Sbjct: 147001 tgccttgccttgccctgccctg 147022
>gb|AC008741.7| Homo sapiens chromosome 16 clone CTD-2547G23, complete sequence Length = 206295 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 499 tgccttgccttgccctgccctg 520 |||||||||||||||||||||| Sbjct: 69992 tgccttgccttgccctgccctg 70013
>emb|CR376858.7| Zebrafish DNA sequence from clone CH211-87A2 in linkage group 8, complete sequence Length = 165716 Score = 44.1 bits (22), Expect = 0.67 Identities = 28/30 (93%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgccctggt 522 ||||| |||||||||||||| ||||||||| Sbjct: 89673 ttgccttgccttgccttgccttgccctggt 89702
>emb|BX511146.6| Zebrafish DNA sequence from clone DKEY-150K1 in linkage group 8, complete sequence Length = 182736 Score = 44.1 bits (22), Expect = 0.67 Identities = 28/30 (93%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgccctggt 522 ||||| |||||||||||||| ||||||||| Sbjct: 81393 ttgccttgccttgccttgccttgccctggt 81364
>emb|CR848029.6| Zebrafish DNA sequence from clone DKEY-46I24 in linkage group 6, complete sequence Length = 238923 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgcc 517 ||||| ||||||||||||||||||| Sbjct: 75249 ttgccttgccttgccttgccctgcc 75273
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 342 cgacgacgacttcctcgccatcgccagcg 370 ||||||||| | ||||||||||||||||| Sbjct: 1010981 cgacgacgattccctcgccatcgccagcg 1010953
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 caaggaggtcgccaacaaggtcggc 210 ||||||||||||| ||||||||||| Sbjct: 3242309 caaggaggtcgccgacaaggtcggc 3242333
>ref|XM_360600.1| Magnaporthe grisea 70-15 hypothetical protein (MG03143.4) partial mRNA Length = 1737 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 237 caagaagatgggcgtggacgaggag 261 ||||||||||||| ||||||||||| Sbjct: 1566 caagaagatgggcctggacgaggag 1590
>gb|AC124507.4| Mus musculus BAC clone RP23-430B14 from chromosome 7, complete sequence Length = 204278 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 500 gccttgccttgccctgccctg 520 ||||||||||||||||||||| Sbjct: 144621 gccttgccttgccctgccctg 144601
>gb|AC112496.2| Homo sapiens X BAC RP11-242C19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166765 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgcc 517 ||||| ||||||||||||||||||| Sbjct: 57597 ttgccttgccttgccttgccctgcc 57573
>gb|AC144521.9| Homo sapiens 3 BAC RP11-158G18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172814 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 acactttgatttagtgctttt 662 ||||||||||||||||||||| Sbjct: 98537 acactttgatttagtgctttt 98517
>gb|AC108359.4| Homo sapiens chromosome X clone RP11-467P22, complete sequence Length = 189224 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgcc 517 ||||| ||||||||||||||||||| Sbjct: 146634 ttgccttgccttgccttgccctgcc 146610
>dbj|AK046107.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230342F07 product:galactosidase, beta 1, full insert sequence Length = 2922 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 501 ccttgccttgccctgccctgg 521 ||||||||||||||||||||| Sbjct: 1644 ccttgccttgccctgccctgg 1664
>gb|AC021180.6| Homo sapiens BAC clone RP11-727M10 from 4, complete sequence Length = 173940 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgcc 517 ||||| ||||||||||||||||||| Sbjct: 84387 ttgccttgccttgccttgccctgcc 84411 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgcc 517 ||||| ||||||||||||||||||| Sbjct: 84427 ttgccttgccttgccttgccctgcc 84451
>emb|AL591379.18| Human DNA sequence from clone RP11-381O7 on chromosome 9 Contains an aquaporin 7 (AQP7) pseudogene, a novel gene, three novel pseudogenes, a pseudogene similar to part of BMS1-like, ribosome assembly protein (yeast) (BMS1L), a pseudogene similar to part of tripartite motif-containing family protein and a CpG island, complete sequence Length = 194491 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 496 ccatgccttgccttgccctgccctg 520 |||||||||||| |||||||||||| Sbjct: 40077 ccatgccttgccctgccctgccctg 40053
>gb|AC159823.2| Mus musculus BAC clone RP23-113F14 from chromosome 12, complete sequence Length = 212532 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgcc 517 ||||| ||||||||||||||||||| Sbjct: 157879 ttgccttgccttgccttgccctgcc 157855
>gb|AC159274.2| Mus musculus BAC clone RP23-405C6 from chromosome 12, complete sequence Length = 200974 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgcc 517 ||||| ||||||||||||||||||| Sbjct: 17956 ttgccttgccttgccttgccctgcc 17932
>gb|AC156499.2| Mus musculus BAC clone RP24-180M2 from chromosome 9, complete sequence Length = 178466 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 501 ccttgccttgccctgccctgg 521 ||||||||||||||||||||| Sbjct: 70466 ccttgccttgccctgccctgg 70446
>gb|AC105765.3| Homo sapiens chromosome 3 clone RP11-54L6, complete sequence Length = 178790 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 642 acactttgatttagtgctttt 662 ||||||||||||||||||||| Sbjct: 2293 acactttgatttagtgctttt 2273
>gb|AC096730.3| Homo sapiens BAC clone RP11-66A14 from 4, complete sequence Length = 188921 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgcc 517 ||||| ||||||||||||||||||| Sbjct: 22483 ttgccttgccttgccttgccctgcc 22459
>gb|AC018696.4| Homo sapiens BAC clone RP11-575H3 from 2, complete sequence Length = 194995 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgccctgg 521 ||||| ||||| ||||||||||||||||| Sbjct: 47914 ttgccttgcctggccttgccctgccctgg 47942
>gb|AC124890.8| Homo sapiens 12 BAC RP11-450G15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 114240 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 493 ttgccatgccttgccttgccctgcc 517 ||||| ||||||||||||||||||| Sbjct: 94840 ttgccttgccttgccttgccctgcc 94864
>gb|AC138229.16| Mus musculus chromosome 1, clone RP23-399N18, complete sequence Length = 211732 Score = 42.1 bits (21), Expect = 2.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 496 ccatgccttgccttgccctgccctggtga 524 ||||||||| |||| |||||||||||||| Sbjct: 97031 ccatgcctttcctttccctgccctggtga 97059
>emb|BX088545.7| Zebrafish DNA sequence from clone DKEY-60G19 in linkage group 17, complete sequence Length = 156881 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 493 ttgccatgccttgccttgccctgcc 517 |||||||||||||||||||| |||| Sbjct: 15517 ttgccatgccttgccttgccttgcc 15493
>dbj|D87003.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:2H8 Length = 43742 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 496 ccatgccttgccttgccctgccctg 520 ||||||| ||||||||||||||||| Sbjct: 32131 ccatgccctgccttgccctgccctg 32107 Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,environmental samples or phase 0, 1 or 2 HTGS sequences) Posted date: Dec 3, 2006 5:45 PM Number of letters in database: 18,610,659,111 Number of sequences in database: 4,638,285 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Sequences: 4638285 Number of Hits to DB: 110,629,073 Number of extensions: 5691229 Number of successful extensions: 118269 Number of sequences better than 10.0: 72 Number of HSP's gapped: 118260 Number of HSP's successfully gapped: 108 Length of query: 708 Length of database: 18,610,659,111 Length adjustment: 22 Effective length of query: 686 Effective length of database: 18,508,616,841 Effective search space: 12696911152926 Effective search space used: 12696911152926 X1: 11 (21.8 bits) X2: 15 (29.7 bits) X3: 25 (49.6 bits) S1: 14 (28.2 bits)